RNA id: XM_036946705.1


Basic Information

Item Value
RNA id XM_036946705.1
length 7513
RNA type mRNA
GC content 0.53
exon number 27
gene id LOC110534798
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34493522 ~ 34600391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGAGTGGAACAGAGGACGCGTCCGTCCCTGTGCCCTCGGCAAGAGAGGGACTGTGTGTGTAAAAAAGAGACGGAGCTGGagcatggagagacagagagagagagagagagagagtgagtgagcgaaagagagcgagcgagagagagaggaaaggaggggggagaggagaggaggtaccaCTGCAGACGCACAGCCACTGTCACAGCTCCACAGCCAGAGGACAGAGGCAGGAACGGCAGTGAACAGCAGCAGCACCAGAGAGCATGGAGGAGCAAGACTCTATCGTTCACCTGGACCTCTACCCTTCTCACTGACAACCTTCCTCTGGGAATACCCCGTGACGAGTggagtagagaagagaagaggagggagatagaggacaAGGAGAGGACTCTCTCAATCTGCCCTTCAGGAGAGGAAGCACCAGTCCCTTACTCTAGTGGGACAAATCACACACtattcttttttttgttgcctgcGGACCTGTGTAAGTCTTGGGCTATCTTCCCCTGCGGTGACCTTTTGACAGTGTGTACTTACGTTGACCCTGGAGAGGACCATGGGGctagggtggaggtggaggggtgcaGGAGGCACCCCCAGCATAAGGACAGGGGGAAGCACCTTCCTCTGGGTGACAGTACTACTGCTCTGTGGTACCTGGAGGGCTAACACACAGATGGTAGAGGACACCAAGTCTGTGTACTTCTGGGAAACAGGGCCATGGGGCAGATGTATGGGCAGTGACTGTGGCCCAGGTGGCAGCCAGAGTCGGGCTGTGTGGTGTGCCCACGTGGACGGCTGGACCACCCTCCACACCAACTGTGACCAGTCCCAGCGGCCTTCCAACCAGCAGAACTGCTTCCGTGTGTGCGACTGGCACAAGGACCTTTACGACTGGAAACTCGGTGCCTGGAACCAGTGTGTGTCCGTGTCAACAAGAACCTTTGGGGGCATGCGGCCATACGTATGCAATGGGGGTGAGGAGGGCATTCAGACCCGGGAGGTGGGCTGCGTACTAAAGTCAGATGAATCTCTCGGAGACGACACCATCTGTGAGTACTTTGAGCCCAAGCCTCGACTAGAGCAGGCCTGCCTCATCCCCTGCCCTCAGGACTGTGTGGTGTCTGAATTCACCCCCTGGACGTCCTGCTCAAAAACCTGTGGAACCGGCCTAAAGAACCGGGTGCGCAGTGTCCTGGTGCCTCCACTCTTCGGGGGTTCAGCCTGCCCAAACCTAACCGAGTTCCACACCTGTAAGCCAGGGCCTTGCATGGGGCCTGAGGGGGTGTACAGCCTCAGGGTGGGGTCCTGGATGCCCTGTTCTCTCCCCATTTCCCGGCCGGTGCGGCAGGCCAAGCATAGGAAGGGTAAAGGGGGGGCCAGGGAGAGGCCTGGGGTCAAAGACCCTGATACTAGGGAGCTGATCCAGAAGAAACGGACCAGGAACCGGCTCAACAGGCAGGAGAGCCCCTTCTGGGACATCCAGGTGGGATACCAGAGTCGCACGGTGTCCTGTGCACACAGGAACGGGAGCACGGTGGGACTCAGTCTGTGTCTGCCCTGGGACCTCCCTCTGACGGTCCAGTCCTGCATCCTCGCTAAGGACTGTAAGCTGAGCGAGTGGGCAGACTGGGGCCCCTGCTCCAAGGCCTGTCTAGACCCAGACCCTGAGTCCCCCAGGGGCCAACGCTCCAGGACCAGACGAGTGCACCAGTTCTccgtgggggagggggaggactgCCCACCGCTGGAGGAGACGGAGCCATGTGACCCCCAGGGGGATGGAGTACTGCCCTGCGCCACTTACACCTGGAGGACTACAGAGTGGAGCGACTGTAGAGTGGACTCGTTGCTAAGCCAACAGGACCGTCGGCGTAGCAACCAGACCGGCCTGTGTGGGGGAGGGCTCCAGAATCGAGAGGTGTACTGTGTCCAGGCCAACGCCGAACTACTGACCTACCTCAACAACCTCAAAGACAAAGATGAGGGTCAGACCTCAAACCAGCAGAAGCCTAGTGTTCCCCCTCTTCTATCCATCAGCTTTGAAGTTACAGCATCCCGTCCTGTGGACAGCAAGCTGTGCGGGGGTCCCGTCCCCAACACGTCCCAGCTGTGTCACATCCTCTGTCCCATCGAGTGTGAAGTGTCCCCATGGGGGGCCTGGGGACCCTGCACCTACGAGAACTGTGACGTCCAAGAAGGGAAGAAAGGTTTTAAACTGAGGAAACGGGAGATCAGCAATGAGCCAACAGGTGGACCAGGGAACTGTCCTCACCTGGTGGAGGCTGTCCCATGTGACGAACCCAGCTGCTGGGACTGGCGCCTGGTCAGACTGGATGAGTGTATCCCGGACGGGGAGCTGCCGTGTGGCCCCGGGACACAGATACCTCAGGTCCAGTGTGTCAACAGCAGTGGTGACATGGTGGACAAGGAGCTGTGTGGGGGAGCCTCTGCCCCTGAGCCCATCGCCTGTGATGTGCCTTGCCCTAAGGACTGTGTCCTCAGCGACTGGACCTCCTGGTCCTCCTGCTCCCAAACCTGTTCCAGCAAAACCATCGAGGGCAAGCAGTTGAGGACTCGCTCCATACTGGCCTACAACGCTGGCGAAGGTGGTGGCATGTGCCCCAACAGCAGTTCCCTGCAGGAGGTGCGTAACTGCAACGAGCATGCATGTACGGTGTACCACTGGCAGACTGGCCCCTGGGGCCCCTGTACTGAAGACCCCTCAGCCTCAGCCCTCAACACCACCACTGGCCCCAGGTCTGCTGCCGGCCCCAACAGCAGTGGGCAGGGCCCCTGCTCCCGGGGCATGCAGACACGCAAGGTCATCTGTGTCCGGGTCAACGTGGGACAGGTGCCACCCAAGAAATGTCCTGAGAGTCCTCGTCCAGGTACAGTGCGACCGTGTCGAATGCCCTGTAAGAGGGACTGCATCGTCACCCCCTTCAGCGACTGGTCCCAGTGCTCTCCCACCTGTGATGCAGCTGGTAACATTCAGAAGACGAAGCAGTCAAGAAACCGTGTCATCCTCCAGCTGCCAGCCAACGGGGGCCAAGACTGTCCTGAGgtgctggaggaggagaaggactgCGAGGCTCCTAAAGTCTGCCCTGGTTACAGGTGGAAGTCACACAAATGGAGAAGGTGTCAATTGGTGCCATGGAACATCAGGGAGGACAGCCCAGGGGCTCAGGAGACATGTGGACCAGGTCTTCAAACAAGAGCCGTGTCCTGTCGCCAGCTGGACGGAGTGCAGGCAGACATTGGAGagtgtctgaagtttgccaacaCCATGCCCCCCATCAGTCAGCGGTGCCAGCTTCCATGCCAGGACGATTGCCAGCTCACCAACTGGTCCAAGTTCTCGTCCTGCACAGCTGACTGTGTGGGGGTCCGAACCAGGAAGAGGTTACTCGTAGGGAGAAGCAAGAAGAAGGACAAGTGTAAGAACACCCAGATGTACCCTCTGAGCGAGACCCAGTACTGCCCGTGTGACAAGTACAATGCCCAGCCCGTGGGCAACTGGTCCGACTGCATCCTGGCCGGGGGAGACCGGGTGGAAAGCCTCCTGGGCATGAAGGTCCAGGGGAACATCAAGGAGTGTGGCCAGGGCTACCGCTACCAGGCCATGGTGTGTTACGACCAGGACAACAGACTGGTGGAGACCTCACGATGCAACAGCCACGGCTACATTGAGGAGGCATGCATCATCCCCTGTCCGTCAGACTGTAAGCTCAGCGAGTGGTCCAACTGGTCCCGCTGCAGCAAGTCATGTGGTAGCGGGGTCAAAGTGCGTTCCAAGTGGCTCCGGGAGAAACCCTACAACGGAGGGCGACCCTGCCCCAAACTGGACCACATCAACCAGGCCCAGGTGTATGAGGTTGTGCCATGTATTAGTGACTGTAGTCAGTATGTGTGGGTGGCTGAGCCCTGGAGTGTATGGAAGGTCAGCAACTTGGACCTGAAGGAGAACTGTGGAGAGGGAGTCCAGACCCGCAAAGTCAGGTGTATGCTGAACACTATTGACGGTCCATCTGAGTCGGTGGAGGACTACCTGTGTGACCCGGAGGACATGCCCTTGGGGACGCGGGGAAGCCGGCTGCCCTGCCCCGAGGACTGTGTCCTCTCTGACTGGAGCAGCTGGAACCGCTGCAGCCTGCCATGCAGCTACAACAACAGCAGGAAACGGACAGCCTACGCCATCCGGTCACCTGGAGAAGGGAGACAATGTCCAGACACCACAGAGAAGGAGCCATGTAGTCTGAACCTGAACTGCTTTCACTATTTCTACAACATcacagACTGGAGCACATGTCAGCTAAGTGCCAATGCTGTGTGTGGGAATGGCATCAAGACGCGGATGCTGGACTGTGTACGCAGCGACGGCAAGTCTGTCGACCTCAAGTTCTGTAAGGAGCTGAGCCTGGAGAGGAAGTGGCAAATGAACATTTCCTGTGTGGTGGAGTGTCCCGTCAACTGCCAGCTGTCTGATTGGTCGGCCTGGTCAGAATGCTCGCACACGTGTGGACTGGATGGGAGGATGTGGCGTAGCAGGGGGGTGGTGCAGGGGTCCCAGGGAGACGGGCGTCCCTGTCCCTCTcagctggagcagtggaaaccttgTCCTGTTAGACCCTGTTACAGGTGGCAGTACAGTCCCTGGTCTGAGTGCAGAGTGGAGGAGGTGGTATGTGGAGCGGGACTTCGCTACCGGAACCTGACGTGCTTCGTGTCGGACGGCTCCGGAGAAGGAGAGGCCAGCATGGTGGAGGAGGAGCTGTGTGGGGGTCTGGAGCTGGCTGtcaacagagacaaactgatcATACTGAAGGAGACCTGTGTTCTGCCCTGTCCAGgtgAATGCTACCTGATGGAGTGGTCTGACTGGAGCccgtgtctgagtgtgtgtgccaAAGGGGCCGGCGTGGACTTTGGCTCTGTCCAGGTGCGCTCGCGAGCCGTCATGGCCCAGGAGCCCGAGAATGTCCAGCTGTGTCCTGACCAGGATTGGGAGTCCCGACCTTGCACTGATGGGGAGTGTTTTGAGTACAAGTGGATGAGCAGCACGTGGATAGGCTCCTCTCGCGTCACCTGGTGTCAGCGCTCTGATGGACTCAACGTCACAGGAGGATGCCCCCATATCAATCCTCCAGGGGACGACAACAACTCCTGTGACCCGCCGTGTCAATTGCCATTGTCCTTCTGCACTGAGgctggtgtgtgtatgtgcgagGAGGGCTACACAGAGGTGATGTCCTCCAGTGGCCAGCTGGACCACTGCACCCCCATACCCATTCTGGAGATCCCCACAGCCGGGGACAAGAAGACTGACGTGAAGACCAGCCGTGCCATCAACCCCACCCTGCCTGCCACCATACAGCCTGGACGCACCGGACGCAACTGGTACCTGCAGCCCTTTGGACCAGCAAAAAGCCAAAGAAACCAAAGAGACAGAGGCAAATGAACAACCGATTGAAACCTCTCACCCTAGCCTATGATGGGGACGCTGACATGTAGGACTCTGGGGTAGCCTAGTCCTCCAGAGACCTGCCCCACCTGCCGTAAAAACAAAGAGACATATCCCATCATAGGAAGGACAGGGATGTTTTCATCTTGCAGATCAGAAGAAGAAGACCAACGGCCATCTTGAATCCATTTTGGGTCCTCATGTGTTAATTGGAGATTGGAATTGAGGAAACATTTCTCCACTTAGACATATTTGGGTTTAGTCCATTTCAAGCAGCAGTTCTCCTTTTCCATTTTCTTTTGTGATATTTCCTTAAACAAAAGCCTTCACAGCCTCCACTCACTATGAGGAAAATGCCTTTTTTTTTGGTTTGCCCATTTTTTGCTTTCAAATGGAAGGGCTGCTGCTAAGAGACAAACTTTTCTGTCTTTGAACACAAACAGCACAAGCTCATTTCTTTGCCGTGTTTTTCTGCTCGTCACTGAAACGTTGAGTAGCTGGAGGCTTAGGATGCACTGACGGTTCGCACGTTGCCAAAAGTCACCGCAGGGAAGGGGAGGAAAATCTCCATGAAAAGGCTTGGATTCATTTCCTTTCTGGATTTTGACTGAAATCTCATTCGGTCGCAAACAAAGAGATACTTTTGGTTTCCGGTTGATTCCTAGACAGAGGCCTATCTTGAAGGATAAACATATACAGACCGAGAACACAAGATGAGAAACAATCCCTGGTTACTGGATCTATTGCCTGTCTCCCTTTTGCTTTGTTTCAGGCACTATTATTGCACTATATTAGTGCAGCATGATATGCACATGATGACTTATATGTTGTATTGCCATAGAACATTGCCTCTCTTAAGACACAACCAAATGCAGTTGGAAACTAAATGTGAAAATAATAGGCATTTTCAAGACCATGGATACATGATAACTGGAGATGATGTCCACATTCTATAACACAGGGGGTGTGAATCAATAGTAAATATGTATAGATTTTATTTTGTCACAACTCGTTTTGTTTTTGGTCCAGTATCTTTTGTGGTCTATATACTGCAGTTTGTTTGGTATTGTCCCTCTCTATGCCCGAATGAAATCGAACAGATGACTTAAATGAGGACCATTGATTCTGTTCTTGCTTACAATGAGATATTTCCAATGGTTTAAATGTTGTAAATATGAAACATAGCCCATATGTACATGGAAGATACATGGGTAAAttgattttcttattttttagaTAACTTGTTTTCGCAAAAAACAAAACCCTTCTAAAGCTAAAACGATgtgtgtgactactattgtatttgTATCTAATTTCTAATGTCACGCAACTCTAACTTCTGCCTTATTGCCAATGATCAGCTATCTACAGTACCATATACATTCATGAAACCAACATATTTAATAATGGGTGCAGCACAGGTTTAAACTGTATGTCATTGATTCATGGGATGAATGACTGATGAATTTGGTGATTGATTGAATTTCGATAGAAGTTAAACGGTACCATTTTCTAGGACAAAAGGCTCTAGGAACAAGACTAtttaaatgtccctttttcacaATGACCCATATCATAGGTGCCCTTAGACATATTATAATGATGCAGTCGTTCTCCCGGCGTAcaatatcacatcatatattctgtatatatatatcgAGGTCCATCTAAGCAGCCGTCAGTACAGTATATGAATACAGAGGAAATATGACGCCGCTGTTCTACAGTGGCAGAATTCGACCAGTCTGCCTGATCGCTAGAAGAGCAGTTGATGAGGAGAATGTTAACTTTTTTTTCCcttttaaatattttttgaatttttggagaaaaaaaaaaaaaaaaggatcaacatatgtgtacatttattttgtattgCACACAAATGTTTAGTTTGAATATTGCAAAGTGGGTGTATGCTATTACTGATGGTGGTTCTCTTGAAGCAAGCTGTGTGTTGTACAAAAAGATAAGACTCCGTCATTTTGTAGAGATTGTATCGGAAGTATTACTAAAAATAAATGAAGAAAGTGTTATAAACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155956 lncRNA downstream 20045 34443079 ~ 34473477 (-) True G135438
TU155923 lncRNA downstream 28934 34464322 ~ 34464588 (-) True G135406
TU155959 lncRNA downstream 40431 34450627 ~ 34453091 (-) True G135441
TU155927 lncRNA downstream 100115 34384555 ~ 34393407 (-) True G135409
TU155746 lncRNA downstream 125447 34367497 ~ 34368075 (-) True G135265
TU156045 lncRNA upstream 492 34600883 ~ 34601451 (-) False G135522
TU156047 lncRNA upstream 492 34600883 ~ 34601451 (-) True G135522
TU156218 lncRNA upstream 135230 34735621 ~ 34736034 (-) True G135668
TU156420 lncRNA upstream 277347 34877738 ~ 34878215 (-) True G135850
TU156530 lncRNA upstream 304453 34904844 ~ 34905084 (-) True G135950
XM_021560176.2 mRNA downstream 237 34484065 ~ 34493285 (-) True LOC110488138
XM_021560168.2 mRNA downstream 18151 34465066 ~ 34475371 (-) True LOC110488127
XM_021560161.2 mRNA downstream 18625 34465066 ~ 34474897 (-) False LOC110488127
XM_021560093.2 mRNA downstream 70729 34406067 ~ 34422793 (-) True LOC110488086
XM_021560056.2 mRNA downstream 109496 34370816 ~ 34384026 (-) True nek10
XM_036946716.1 mRNA upstream 46564 34646955 ~ 34677655 (-) True LOC110534811
XM_021560311.2 mRNA upstream 140104 34740495 ~ 34756679 (-) False etv1
XM_021560294.2 mRNA upstream 140104 34740495 ~ 34756933 (-) False etv1
XM_021560276.2 mRNA upstream 140104 34740495 ~ 34758759 (-) False etv1
XM_021560286.2 mRNA upstream 140104 34740495 ~ 34759144 (-) False etv1
TU155089 other downstream 627585 33865488 ~ 33865937 (-) True G134668
TU154709 other downstream 1268420 33212664 ~ 33225102 (-) True LOC110487618
TU154412 other downstream 1705401 32748208 ~ 32788121 (-) True G134102
TU154326 other downstream 1741944 32738829 ~ 32751578 (-) False LOC110514821
TU156114 other upstream 3824 34604215 ~ 34604478 (-) True G135575
TU157060 other upstream 705976 35306367 ~ 35307729 (-) True G136399
TU157405 other upstream 1073907 35674298 ~ 35675627 (-) False drd2l
TU157404 other upstream 1074040 35674431 ~ 35675705 (-) False drd2l
TU158240 other upstream 1769613 36370004 ~ 36370328 (-) True G137479

Expression Profile