RNA id: XM_021560187.2


Basic Information

Item Value
RNA id XM_021560187.2
length 2382
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC110488146
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34626361 ~ 34634974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAAGGTTTCCACATTACCATACGAAAGTGACGTCTCGTCGGAGCTGCTGGCAGAATACTAGTGCGTGTATTTATGTCAGTACTATATTGATAACAACAGCGGCTATTCGTGACCAAGCATATGTAAAGCAATTCTGCGTGAATATATGCAAAGAAAGTGATGGGGAAGTCACACTCCCTCTTGTCGAAGGGGAAAGCCGACCGTGACAGCCAGAGTGGCCTGACGACTGGTCCAgagtacatagacacacagagtgAAGAGGATGGAAAGAATGGAGATGTGTCTCAGTTCCCCTATGTGGAATTTACTGGCAGAGACAGTGTCACATGCCCCACATGCCAGGGCACTGGCAGAATACCACGAGGCCAAGAGAACCAGCTTGTGGCTCTGATTCCATACAGTGACCAGAGGCTCCAGCCAAGGAGAACAAAGCTGTATGTCACGGTGTCTGTGTTTCTATGCCTCCTGCTGTCTGGCCTGGCTGTGTTTTTCATGTTCCCTCGGTCTATCGACGTCTCCTATGTGGGCGTGAAGTCAGCATTCGTCTCCTATGACCAGGACAAACGGATTGTCTATCTCAATATCACGAACACTCTGAACATCACCAATAACAACTACTACGCTGTATCCCTGACCAACATCACAGCCCAAGTGCAGTTCTCTAAGACAGTGATTGGGAAGGCCCGTATTAGCAATGTGACGACCATCATACCACTGGATAAGCAGCAGATTGACTACATGGTTCCCACAGTCATTGCTGATGAGATGAGTTATATGTTTGACTATTGCACCCTGCAGTCCATAAAGGTTCACAACATTGTGGTCATGATGCAGGTGACAGTGACCACATCCTACTTTGGGCACTCGGAGCAGGTCTCCCAGGAGATATACCAGTATGTGGACTGTGGGGGCAACACCACCTCGCTGCATGGACATGTGAAGATGTATCAGTAAGGCAGTCAAAACTCAGCCATAATGGAAGCCCATCCATCTAAAGGCAGACGAGAGGGTTTTTACGGAGTTCCTTTGGGCACACGTCCCCTGGAGAATAGGAGGAACCATGAAGCAAGGTACCAATGTTCAGTGTAATGAGGGTTTGAGGATGTCGCAGGTAGAAAATCTCTTCCTAATCGAATGACCCAATCCAATGTGTACAGGCATTTGAGGTAAAGATGCACTTTAGCTTTGTATGGGAAACGCAATCATCAGAAAGTATTTATATGGCAGAGTTGTTGATGTAATGTAGTCTGTACCACTAACCTTCCCAGAACACTAGCTTTGGGACGTGCAATACAAATGAAGTAATAGGACAGCATCCTCATTTGGATTACCAGCACCACTAATCACCCCTAACCACTTTTTTGATGGCATTTTAtgccattctttttttttttatataccagCCATTTTGTTTTCTTCAAGGATGTATTTTGTACAAAATAGTACTTCCTGATGATGTGTGTCGTTACACTTACATTTTCATTGTAATGATAGAATGAGACGTAAATCTAACTGAGGTGGCAGATCATGTCGGGGTGGAGTCGGCGTAATTGTGATGACTACGGACCACAATTAGATTGCGACATTTAGGGATCTAATGAGAGGGATCTTGTATTTTTTATATAATTCAAATACTGTACCTATAACTATTAGATGTGGTGTTTTATGATGTGAATTACTCTTTAATTGTAAACCTCTGAATTGTTTGTTGTAATGGGAATGTTACAGGGTTTTTTTCTAACTTGGGTAGTAGACGGCTACCCATTTCGAAACATGATATTACATAGATACCCTCAATGGTGTTGTAAAATTAGGTTTTTATTTTCTCTTTGGGAATCGATTTTAAAGAGGTCATTTTGTCTTTACATTTTTAATTTGATGCCCTTTGCCCCTTTTTTAATTTGTCATGATTGATCACTGAAACTCGCAAGTAAGTTGTGCTTTTCGAGTTTGTGTTTCTTTCTGagatgattaaatgtcaggatacAGTAAGTATCCATTTTGTTATTTTCCTTAAACATTTGTTATTGCTTTTAACATCTGTTGTGCATGCACGGAATACTGAACTGAggacaataaaaatgcccaagaTAAAATATCAGATGTGTACATTGTTTATATTATCTGATATACACTATGGAGGAACAATCACACCAATGTATCGTTGTATATGTCAATGTGCCATATTATGTACCAAATCACCCAAGAAGGAACATTTTCATCAGTTTAAAGTCAGTTCTGAATCCTCACTGAGGCGCGTTGACTGTGTACTACTGTGTAAATGTGGATACTGTCCATGTAAGCCACTGCCAatcatacagtacatgtaacaATGTTTTTTTCCTTGCATGAAACTGGGAATAAAAGTGGTTGATTTTGA

Function

GO: NA

KEGG:

id description
K25048 TMEM106B; transmembrane protein 106B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155892 lncRNA upstream 70996 34554573 ~ 34555365 (+) True G135380
TU155852 lncRNA upstream 114648 34510480 ~ 34511713 (+) True G135341
TU155813 lncRNA upstream 156163 34468889 ~ 34470198 (+) True G135316
TU155791 lncRNA upstream 217884 34408152 ~ 34408477 (+) True G135295
TU155742 lncRNA upstream 259317 34366732 ~ 34367044 (+) True G135261
TU156221 lncRNA downstream 103308 34738282 ~ 34738494 (+) True G135671
TU156236 lncRNA downstream 121657 34756631 ~ 34757180 (+) True G135685
TU156435 lncRNA downstream 260305 34895279 ~ 34895499 (+) True G135861
TU156439 lncRNA downstream 266586 34901560 ~ 34901780 (+) True G135865
TU156447 lncRNA downstream 278752 34913726 ~ 34914891 (+) True G135873
XM_021560143.2 mRNA upstream 161768 34432779 ~ 34464593 (+) False LOC110488114
XM_021560149.2 mRNA upstream 161768 34432779 ~ 34464593 (+) True LOC110488114
XM_021560106.2 mRNA upstream 194137 34423390 ~ 34432224 (+) False LOC110488092
XM_021560130.2 mRNA upstream 194137 34423391 ~ 34432224 (+) False LOC110488092
XM_021560124.2 mRNA upstream 194137 34423406 ~ 34432224 (+) True LOC110488092
XM_021560203.2 mRNA downstream 9461 34644435 ~ 34646777 (+) True vwde
XM_036946724.1 mRNA downstream 53135 34688109 ~ 34689753 (+) False si:dkey-30e9.6
XM_036946727.1 mRNA downstream 53135 34688109 ~ 34692286 (+) False si:dkey-30e9.6
XM_021560237.2 mRNA downstream 57636 34692610 ~ 34695204 (+) False arl4aa
XM_021560219.2 mRNA downstream 58118 34693092 ~ 34695204 (+) False arl4aa
TU155162 other upstream 663703 33962417 ~ 33962658 (+) True G134735
TU154038 other upstream 811878 33814033 ~ 33814483 (+) True G133760
TU153923 other upstream 1129076 33496454 ~ 33497285 (+) True G133663
TU153719 other upstream 1456983 33167438 ~ 33169378 (+) True G133473
TU152482 other upstream 2743288 31857686 ~ 31883073 (+) True G132342
TU156107 other downstream 52981 34687955 ~ 34690946 (+) True si:dkey-30e9.6
TU156494 other downstream 336666 34971640 ~ 34971931 (+) True G135916
TU156498 other downstream 337475 34972449 ~ 34972801 (+) True G135920
TU156464 other downstream 349998 34984972 ~ 34996796 (+) False LOC110488281
TU156467 other downstream 363422 34998396 ~ 35000555 (+) True LOC110488281

Expression Profile