RNA id: XM_036946727.1


Basic Information

Item Value
RNA id XM_036946727.1
length 3259
RNA type mRNA
GC content 0.40
exon number 5
gene id si:dkey-30e9.6
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34687955 ~ 34692286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTACTTCACATCAAACAGTGCAAGCTGAACTTGAAACTTGGTCATTTCTGAACATGTGTCTTCTGTAACAGATTGTGTCTTTGAAATTCAAGGTTACCGTTCATACAATTTCAGGACTGTGATATCACAATGACCTCTAACAGTTATTTGGATCCTTCGACATCAGTTTATTTGAATAAAAAGACAGTCTTTTCTGCCAGCCTGAACTTAGCCACCATAAGAAGCGAAGGTTTTATCCGTCCTCATTATTCACATCAGGTTGACCCATGGAACTTGAAGCCGCCTGATTTCTCTCCTAAACTCTACACATCTCTGAGTGTCCCTCGAAGGAAGAAGACAAAAAATACACATAATCCTTTACTGACACTTGCCTCCAGTGAGACAGTCTTAAGTGTGGACAGATTTACCCCAAACATTCTAATTCCTGAGATTGACCAGAATAAAAAAGCACTGCCAAAATTCAGCACATCATACAGACCTCCTGGCTCTTTAGAATCCAAGCTGATGTTTGTTAAAACAGGGAAATACCCTCCTGTGGCCTACAAGAACCCTAAACCACATAACTTTAGACAGCTTGCTGATGACATGCCAAATATGGTTACTGCAGCTGAAAGGGATCCTGGTCAGTTGAACTTCAAATCTCAGCACCTGAGTATAATTAGGGGGACCAAATCGGACACAGACATTTATTCAAGGGAACCTTTTGGGAAGATGGACACCTATAAGCCAACAGAGCCTAGATGGGAGGCCAGGCTCACACTCCCTAAATTGCCTTGGCCCCCAAAATCTGCCTCCTACACTAGACACAGGCACAGACGCGGAGTGTACAGTGCTTTCATggacagagtagaggagaagatctCCAGCTCTTGGAAAACTGGCTGACACTTTGACCTCTAAAGTCTTCTATGGAGTCCACAGCTGTGCAGTGATCTGTGCATCGGCTCCACTAAAATTTCCAGTGTGTTAAGCCAGACAATATGTTCTAATCTGGGTGTGTGAAAGGCATGGCTGAAATATTTGTATTCACAGAAAGGAATCTTGCAGGCTATAGCCTAATAAAAATACTTTGAGGTATCATGAAAATACAATAATTGTAGGCTAGACTAGAGAGTTCATTGCAAAACAATTGCCCATGCCATGACACTTTTTGAAAGATGTCAATTTATCTAGGCCTAATAGGctattgtgtgtgtataaatcTATTCTCTCAGACAATAGGCAACAAAGATAATCCCAGTAACTGGAAAATGTAAACAAAGTGTGTCATTACAATGCCATTGAAACTAATTTCTAAAATGTAGGCCGAAATGCAATTAAAGTTCACAATTGGAGAGCAGCTAAACCTCGCTTAATCCAGAACAAAAATCTGGAGTAATTAGTCAGATGCTCGATTAAATTCTGGGTCCATacatgagggagggagaagggaacaaACAGCTCCACCTGTTCTCTTCGCAAGTTAGGGGCAAATCTATGGGCCAAATGTTCCCTCCCCTTTCCGAAATTCTAAAGCACCAGAAATAATGCTCCTCATTATCTCACACTTCCCATTGTATCTTGACAAATGAATGTACCATTTATGTTAAAGTCGTCTGTCAACAAGAGATTAGAGAGCAGCCAAACTAATTTCGGAACCCGGAACCAAATTATTGAAAATGTTTGTTCATGTAGCAATTACAAGCACATTCCTATTGCTAAACGTGCCCTACATTTGTAGGCTATATAAAAGTTTGCATTCGAGAGAAAAGTTAAGTATATTTAGAAGTTGTAGCCTACACATTGTATTCCTGACCTggggggtatactacaaagcagcaTCAATgatttagccagctaacttttATAAGCAACCAGAAATAACTTGGTTTTATggttaataaaataaaattgttgtTAAATCAATTAGACCATGCCCATGTCAAGCTTAtctttatacaaaataaaaaattatcAGAATATTGTTATAATCCTGTTTTGTAGTATgcccacagagtttctaaaccttGTTATAAACTGAGTGGTTCGAAAGCTGAATGccgattggctgaaagccatggtatatcagaccgtataccatgggtatgacaaaaacatttttttactgttgtaattacgttggtaaccagtttgtaaagcaataaggcaccttgtggtatatggccaacataccaccATGTCTGACTCCAGGTAAAaactgcaggtagcctagcggttaacagAGTCCCACCAGTaaacgaaaggtcgctggtttgaatccccaagctgactggGTAAAAACTAAAATCTATGTGCCCTTGGGCTAGGCActaaaccctaattgctcctgtaggtcactctggataagagtgtctcctAAAATGTAAGACGTTGTGCTTAAGaatagcccttagctgtggtatattggccatatacccctCTGCAGTAGACcatggatatactgacaagatacatGTCCCTCTGCCCTAACGAAACCTTTGTCCACAAAGCGGCATGGAGGGCTGTCTCGCTCCCGCCTATCCTTTCTTTGAATTGGTTGCTACATCACATTATTGTAATCCCTTTTTAAATATTTGATTAGGGTCGTTGACgtcaaccgcctgtattcaatCTCGAGACAACTCCAATATGAAGTGTTTGTTATTTTCAAAGTTGCCGGGATGTCACGTACCCTATTTATAACAGTACAATCGTAACAACTTAAACATTACAAAACttatattcgatcaaataaacctCGTGTTGCAAATAAGCCATTAAACGCCACCTGCTGTAGGGAGGCAGATTTTCCGCCGAGTTGGACCCCTCACTCTGTCTGTACTCGCCAATTTCGATTGTTTGTAAACTGGTTCGACCTGGATGGCGCGCTTTGGTCACGTCCACATTTTATCCAACAGGTGCTTGCGCTTAGTAATTACAATGTTCTTTGTTGATGGGTGTTTGCCTAATATCTTTCTTCGTTGAATATTTATGTGACATTATGTCCAGATGTGTTGAAATGTATTATGTATTTGCTAGTGATATTGAAACTAGTGAAGTATTGAGTGAGATCTTTATTTAAACTGAGGAAATACCTGTTATGTTCATTTTGGATTATCCCAGTTTTAAGGGTTGggttattattatgattattattatttttaccttACTGGCCTCAGATGGCTCATTTTCGGGTAAATTTAGGCTGGAGTGGCATGTTGTCCCAGCTGGGGCTCTGCTAAACTCAGCTGTGTGAGGAATTGTCGGCACTCTGCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155892 lncRNA upstream 132744 34554573 ~ 34555365 (+) True G135380
TU155852 lncRNA upstream 176396 34510480 ~ 34511713 (+) True G135341
TU155813 lncRNA upstream 217911 34468889 ~ 34470198 (+) True G135316
TU155791 lncRNA upstream 279632 34408152 ~ 34408477 (+) True G135295
TU155742 lncRNA upstream 321065 34366732 ~ 34367044 (+) True G135261
TU156221 lncRNA downstream 45996 34738282 ~ 34738494 (+) True G135671
TU156236 lncRNA downstream 64345 34756631 ~ 34757180 (+) True G135685
TU156435 lncRNA downstream 202993 34895279 ~ 34895499 (+) True G135861
TU156439 lncRNA downstream 209274 34901560 ~ 34901780 (+) True G135865
TU156447 lncRNA downstream 221440 34913726 ~ 34914891 (+) True G135873
XM_021560203.2 mRNA upstream 41332 34644435 ~ 34646777 (+) True vwde
XM_021560187.2 mRNA upstream 53135 34626361 ~ 34634974 (+) True LOC110488146
XM_021560143.2 mRNA upstream 223516 34432779 ~ 34464593 (+) False LOC110488114
XM_021560149.2 mRNA upstream 223516 34432779 ~ 34464593 (+) True LOC110488114
XM_021560124.2 mRNA upstream 255885 34423406 ~ 34432224 (+) True LOC110488092
XM_021560237.2 mRNA downstream 324 34692610 ~ 34695204 (+) False arl4aa
XM_021560219.2 mRNA downstream 806 34693092 ~ 34695204 (+) False arl4aa
XM_021560228.2 mRNA downstream 1004 34693290 ~ 34695204 (+) True arl4aa
XM_021560410.2 mRNA downstream 269085 34961371 ~ 34964552 (+) True LOC110488257
XR_002468376.2 mRNA downstream 292662 34984948 ~ 34997219 (+) False LOC110488281
TU155162 other upstream 725451 33962417 ~ 33962658 (+) True G134735
TU154038 other upstream 873626 33814033 ~ 33814483 (+) True G133760
TU153923 other upstream 1190824 33496454 ~ 33497285 (+) True G133663
TU153719 other upstream 1518731 33167438 ~ 33169378 (+) True G133473
TU152482 other upstream 2805036 31857686 ~ 31883073 (+) True G132342
TU156494 other downstream 279354 34971640 ~ 34971931 (+) True G135916
TU156498 other downstream 280163 34972449 ~ 34972801 (+) True G135920
TU156464 other downstream 292686 34984972 ~ 34996796 (+) False LOC110488281
TU156467 other downstream 306110 34998396 ~ 35000555 (+) True LOC110488281
TU156680 other downstream 459474 35151760 ~ 35153650 (+) True lypc

Expression Profile