RNA id: XM_021560237.2


Basic Information

Item Value
RNA id XM_021560237.2
length 1586
RNA type mRNA
GC content 0.43
exon number 2
gene id arl4aa
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34692610 ~ 34695204 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATACTATTGACCAATCAGTTTGAAAGTAAACAGATAAGGACGCATCATGGGGCGGCGCTGTTTAGCGTGTATCAAAACCCAAGCCAAGGAACATTGGACACACGaacacagcaacaacaaaaaaacggtCACTGTTGTCTTCTAATTGGAATATAATCAGTGCCAATCATCGTTGGAAAAGTAGACCAACCCTTTTATTCCACCTGTTGTTCCCCACATGAGAAAAGATGGGGAATAGATTATCAGAACCACAGACCTTCCTCTCAAGAATCCCCTTCTTTCAGTCATTCCATATCGCCATTTTGGGACTGGACTCTGCAGGTAAAACAACTGTCCTGTACAGGTTGCAGTTCAATGAGTTTGTCAACACAGTGCCTACCAAAGGCTTCAATGCAGAAAAGGTCAATGTGTCTTTGGGCGGCCACAGGACGGTGACCTTCCATTTCTGGGACGTGGGTGGTCAAGAGAAGTTGCGTCCATTGTGGAAGTCATACACACGCTGTACCGATGGAATTGTATTCGTGGTGGACTCTGTAGATGCCGAACGCATGGAGGAGGCTAAAACGGAGCTCCATAAGATCGCCAAGACCGGAGACAACCAGGGAGTGCCACTGCTGGTGGTGGCTAACAAGCAAGACCTGAGGCACTCTCTGAGCCTGGCGGAGATTGAAAAGGCACTAGCGTTGAAGGAACTGGGCCCTGGCACGCCTTGGCACCTGCAGCCCACCTGTGCCATCATAGGAGACGGACTGAAAGATGGCATGGAGAGACTCCATGACATGATCCTTAAACGGAGAAAGATGCTCCGCCAACAGAAGAAAAAGAGATGATCAAGGAGGGAACTGAATCTCTTGTTTTAAATGAAGGACAAAAAGGAGATGTTCTCGCACCTGGGTGGATATAGGAATTCTCCCATAGGCTCGGCACACTGAGTTATATCAGTCAATGTTAAACTAGGTTCTCGTGTCTCAGACAGCAAAGTCTCTTGCTTCATCTTCAGTATTTGTTGCTTTTTAGTGGTTGAGAAAGCACTATGAAGGTAAAGGATTTGGTGTTTCTGAATTTATATAGGAATTTGTAAATTGTCGTTACAAAGAATGGTTTTGATCCTTGATGTTAGACCATTAGTAATGGCTACTTCAAAATTGAACACCAAAAATGACATGTTTGATGAAGAACAGAAAATAATTAACTTCTCTCTACAAAGGTTAGTGGGAGGACAACAAACGTGGTCTTCCTCAAAGGGAACTTTTGAACCTTGTAAAGAGTGCCTAAGCTACTTTTAAATGTTGTacctttttggacatttttgttttacatgtttctttccttctcaaaAGGAAGGTACAGTCTTGCGCTTTTTGTCTGTCTAGTGTACCTCTACTGTCTGTTTGTTAATGCACTTTAGATGACCTTTTTTGATGGAGTTTACAGCCTTGAGGTTTCCCAATATAGCTTATTACTCAAAGAGTTTAGTTGCTTCAGAAGAAGCCAACTGTACTGGGTCCCTATTGGCCACATGGACAATAGATGGGATATGTGTTTCATGTTTTCATCTTTAATTAAAAAAACTTTTTGCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155892 lncRNA upstream 137245 34554573 ~ 34555365 (+) True G135380
TU155852 lncRNA upstream 180897 34510480 ~ 34511713 (+) True G135341
TU155813 lncRNA upstream 222412 34468889 ~ 34470198 (+) True G135316
TU155791 lncRNA upstream 284133 34408152 ~ 34408477 (+) True G135295
TU155742 lncRNA upstream 325566 34366732 ~ 34367044 (+) True G135261
TU156221 lncRNA downstream 43078 34738282 ~ 34738494 (+) True G135671
TU156236 lncRNA downstream 61427 34756631 ~ 34757180 (+) True G135685
TU156435 lncRNA downstream 200075 34895279 ~ 34895499 (+) True G135861
TU156439 lncRNA downstream 206356 34901560 ~ 34901780 (+) True G135865
TU156447 lncRNA downstream 218522 34913726 ~ 34914891 (+) True G135873
XM_036946727.1 mRNA upstream 324 34688109 ~ 34692286 (+) False si:dkey-30e9.6
XM_036946724.1 mRNA upstream 2857 34688109 ~ 34689753 (+) False si:dkey-30e9.6
XM_021560203.2 mRNA upstream 45833 34644435 ~ 34646777 (+) True vwde
XM_021560187.2 mRNA upstream 57636 34626361 ~ 34634974 (+) True LOC110488146
XM_021560143.2 mRNA upstream 228017 34432779 ~ 34464593 (+) False LOC110488114
XM_021560410.2 mRNA downstream 266167 34961371 ~ 34964552 (+) True LOC110488257
XR_002468376.2 mRNA downstream 289744 34984948 ~ 34997219 (+) False LOC110488281
XR_002468377.2 mRNA downstream 289744 34984948 ~ 34997219 (+) False LOC110488281
XR_002468378.2 mRNA downstream 289744 34984948 ~ 34997219 (+) False LOC110488281
XR_002468380.2 mRNA downstream 289744 34984948 ~ 34997219 (+) False LOC110488281
TU156107 other upstream 1664 34687955 ~ 34690946 (+) True si:dkey-30e9.6
TU155162 other upstream 729952 33962417 ~ 33962658 (+) True G134735
TU154038 other upstream 878127 33814033 ~ 33814483 (+) True G133760
TU153923 other upstream 1195325 33496454 ~ 33497285 (+) True G133663
TU153719 other upstream 1523232 33167438 ~ 33169378 (+) True G133473
TU156494 other downstream 276436 34971640 ~ 34971931 (+) True G135916
TU156498 other downstream 277245 34972449 ~ 34972801 (+) True G135920
TU156464 other downstream 289768 34984972 ~ 34996796 (+) False LOC110488281
TU156467 other downstream 303192 34998396 ~ 35000555 (+) True LOC110488281
TU156680 other downstream 456556 35151760 ~ 35153650 (+) True lypc

Expression Profile