RNA id: XM_036946779.1


Basic Information

Item Value
RNA id XM_036946779.1
length 2082
RNA type mRNA
GC content 0.49
exon number 5
gene id meox2a
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34881733 ~ 34895112 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCTCACCTAAGGAGTTTGTAGACACGGTGCTGCTCACTTCGAAAGGCACGGTAGGAATGGGAAGAACTATAGCGCCCAAGTTACTGCCTCCTCGCTATCTGCTAAAGTCATTTTctttcaaagtgtaattaatttcCTTTCTCAGGCAGGCCTGCATACATGTGGCGCAGCTGGCTGTAGTAGCATAGTCTCTGAAGCCCTGGTGTGTGTAATACTGACCATGATGCCGAAGCAATAAGCATTAGCCGTACATCAGGTGAACACATGCAGTTATTGGAATATCTTGTTTGATCGAAAAAGgtctccagtctcctctcctgtcatctGAGAATCTCTCCGGCAGCTTATCTAGGGTTCACTGTTTATCCTGCGCAGCCTGGCAACTGTCCGCATGCCCAGGATTATTACTGGAGCCCcctttcaacacacacacaacttttttttATCGAACTCTTATCAAGGAGACAAATTTGGGGGCTGTGTGTTTGCATGCAATGGATCACACACTCTTTGGCTGCCTCCGCAGCCCCCATGCCACTGTGCAGGCCCTGCACCCTGCCTTCACCCAGTCTCCGCTGACTCTCCACGGACGCACGGACCACGTCTCCTACCCTGACCTGGCCTCTTCCACTGCCACCTCCTCTCCTTCGGCCTGCATCATCTCTGGCTATCCCGGTGACGAGGGCCTGTTCGGTGGGCATCACCATCACCACCGCGGGCATCACCCGGCACAGCAACAGCAGCATCACCCGCCTCAGCACCAGGCCGGCTGGCACATTCCACAGATGCCCTCTCCTGGCAGTGCGAACTCCCGCCACAACCTCTGCCATCCCCACCCCCACTCTCACTTGACCCAGGATAGTGCCCTCGCACCCCCAGACCTAGGCACCCCTGGCAGGAACAGTCTCTGTACCAGCACCCCCAACCTGGGCAGCAGCACCCCCACGGGGGCCAACTGTGTGCCTGCAGACTTTGGAAGACAGACACTGTCACCTGCTGAGGCAGAGAAGAGAAATGGCAAGAGGAAAAGTGACAGCTCAGAGTCCCAAGACGGGAATTACAAGTCAGATGTGAGCAGCAAACCCAGGAAGGAGCGGACGGCGTTCACCAAGGAGCAGATCCGTGAGCTGGAGGCCGAGTTTGCCCATCACAACTATCTGACGAGACTGAGGCGCTACGAGATAGCAGTCAACCTCGATCTCACAGAGAGACAAGTAAAGGTGTGGTTTCAGAACAGGAGGATGAAGTGGAAACGAGTAAAAGGAGGTCAACAGGGGGCTGTAGCAAGGGAAAAAGAACTGGTGAACGTGAAAAAGGGGACATTGCTGCCATCCGAATTCTCCGGCATAGCGGCTCTTCATCACTCCACAGACTCCCTGGCCAATGAGAACAGTCACGACAGCGACCAGAGTTCCGAGCATGCTCACTTATGATGCACAGCAGCAGGCCACGCCTACTCAAAGTGGGCTCAGCCTAACATCTCAGGAACGTCCTTAAAAGGACATGGTGTCTGGTCATCGTTAGCAAAGTTCAACGATGCTAAATAAATGTGTACAAATGTACAAAGAAATGACGTGTGTTACTTGATCTAAGAAGATGCATGTTAGGACGTTGCTTAAACCAAACTAAGATCACCAATACGTTTCAAGAACTGCGAACCCAACGCAGGAATATGAGATATTGCAAAAGGTCAATGCACATTAAGCATATGTTACGAACGTGCCTCCACTCAACGCTCTGCTTTTGGAAGCAGAACATATTCTTAGAATATTAGGACAGATTCAGAATTGGCCGAATTGTTATGAACATTCCATGTTGTGTGTCTTGCATTGAAAAAGTGGCAAGTTCATGCTTTTGATTTGCACTGTTGAACACTTGCCTCAATTGGTTTCTACTGTATGTCATAGAAATTGCGATGTAATCGAATTATTGATTAAATCAAGTGTGCAGGAGAATCAAATTTCAGCTAATTTACAATATACTCTGAACTTTATTATCTGTATTTTTCTTACCTTCGCTATAGCAATCATTTCTAATACACACTATACCACTCACACAGTAATAAACATTTCTGATGTTC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09322 MEOX, MOX; homeobox protein MOX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156420 lncRNA downstream 3518 34877738 ~ 34878215 (-) True G135850
TU156218 lncRNA downstream 145699 34735621 ~ 34736034 (-) True G135668
TU156045 lncRNA downstream 280282 34600883 ~ 34601451 (-) False G135522
TU156047 lncRNA downstream 280282 34600883 ~ 34601451 (-) True G135522
TU155923 lncRNA downstream 417145 34464322 ~ 34464588 (-) True G135406
TU156530 lncRNA upstream 9732 34904844 ~ 34905084 (-) True G135950
TU156564 lncRNA upstream 56734 34951846 ~ 34952080 (-) True G135980
TU156512 lncRNA upstream 57968 34953080 ~ 34953452 (-) False ankmy2a
TU156513 lncRNA upstream 57968 34953080 ~ 34953416 (-) True ankmy2a
TU156566 lncRNA upstream 79253 34974365 ~ 34974590 (-) True G135982
XM_036946769.1 mRNA downstream 32519 34824933 ~ 34849214 (-) True LOC110488219
XM_021560333.2 mRNA downstream 66559 34762165 ~ 34815174 (-) True dgkb
XM_021560269.2 mRNA downstream 122588 34740495 ~ 34759145 (-) True etv1
XM_021560286.2 mRNA downstream 122589 34740495 ~ 34759144 (-) False etv1
XM_021560276.2 mRNA downstream 122974 34740495 ~ 34758759 (-) False etv1
XM_021560368.2 mRNA upstream 18584 34913696 ~ 34946214 (-) False crppa
XM_021560376.2 mRNA upstream 18584 34913696 ~ 34946214 (-) True crppa
XM_021560389.2 mRNA upstream 51787 34946899 ~ 34949511 (-) True LOC110488240
XM_021560399.2 mRNA upstream 57949 34953061 ~ 34960249 (-) False ankmy2a
XM_021560437.2 mRNA upstream 71795 34966907 ~ 34980883 (-) False LOC110488264
TU156114 other downstream 277255 34604215 ~ 34604478 (-) True G135575
TU155089 other downstream 1015796 33865488 ~ 33865937 (-) True G134668
TU154709 other downstream 1656631 33212664 ~ 33225102 (-) True LOC110487618
TU154412 other downstream 2093612 32748208 ~ 32788121 (-) True G134102
TU154330 other downstream 2130155 32738829 ~ 32751578 (-) False LOC110514821
TU157060 other upstream 411255 35306367 ~ 35307729 (-) True G136399
TU157405 other upstream 779186 35674298 ~ 35675627 (-) False drd2l
TU157404 other upstream 779319 35674431 ~ 35675705 (-) False drd2l
TU158240 other upstream 1474892 36370004 ~ 36370328 (-) True G137479
TU158620 other upstream 1739081 36634193 ~ 36639005 (-) True G137839

Expression Profile