Gene
RNA
| Item | Value |
|---|---|
| RNA id | NM_001124357.1 |
| length | 1380 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 4 |
| gene id | tnf-alpha |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 35023007 ~ 35025008 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006955 | immune response | biological_process |
| GO:0005615 | extracellular space | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0005125 | cytokine activity | molecular_function |
| GO:0005164 | tumor necrosis factor receptor binding | molecular_function |
| id | description |
|---|---|
| K03156 | TNF, TNFA; tumor necrosis factor superfamily, member 2 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU156497 | lncRNA | upstream | 49175 | 34973608 ~ 34973832 (+) | True | G135919 |
| TU156485 | lncRNA | upstream | 69587 | 34953079 ~ 34953420 (+) | True | G135907 |
| TU156492 | lncRNA | upstream | 70152 | 34952517 ~ 34952855 (+) | True | G135914 |
| TU156491 | lncRNA | upstream | 70496 | 34952139 ~ 34952511 (+) | True | G135913 |
| TU156447 | lncRNA | upstream | 108116 | 34913726 ~ 34914891 (+) | True | G135873 |
| TU156600 | lncRNA | downstream | 2178 | 35027186 ~ 35027532 (+) | True | G136015 |
| TU156603 | lncRNA | downstream | 8897 | 35033905 ~ 35034771 (+) | True | G136018 |
| TU156604 | lncRNA | downstream | 10011 | 35035019 ~ 35035261 (+) | True | G136019 |
| TU156605 | lncRNA | downstream | 11462 | 35036470 ~ 35038923 (+) | True | G136020 |
| TU156606 | lncRNA | downstream | 17304 | 35042312 ~ 35048954 (+) | True | G136021 |
| NM_001124425.1 | mRNA | upstream | 13301 | 35004580 ~ 35009706 (+) | True | lt-b2 |
| XR_002468381.2 | mRNA | upstream | 23022 | 34984948 ~ 34999985 (+) | False | LOC110488281 |
| XR_005036520.1 | mRNA | upstream | 23022 | 34984948 ~ 34999985 (+) | False | LOC110488281 |
| XR_002468378.2 | mRNA | upstream | 25788 | 34984948 ~ 34997219 (+) | False | LOC110488281 |
| LOC110533739 | mRNA | downstream | 97795 | 35122803 ~ 35127514 (+) | False | LOC110533739 |
| XM_021560547.2 | mRNA | downstream | 102962 | 35127970 ~ 35141476 (+) | False | LOC110488331 |
| XM_021560537.2 | mRNA | downstream | 103006 | 35128014 ~ 35141476 (+) | False | LOC110488331 |
| XM_021560555.2 | mRNA | downstream | 103172 | 35128180 ~ 35141476 (+) | False | LOC110488331 |
| XM_021560571.2 | mRNA | downstream | 104206 | 35129214 ~ 35141476 (+) | True | LOC110488331 |
| TU156467 | other | upstream | 22452 | 34998396 ~ 35000555 (+) | True | LOC110488281 |
| TU156464 | other | upstream | 26211 | 34984972 ~ 34996796 (+) | False | LOC110488281 |
| TU156498 | other | upstream | 50206 | 34972449 ~ 34972801 (+) | True | G135920 |
| TU156494 | other | upstream | 51076 | 34971640 ~ 34971931 (+) | True | G135916 |
| TU156107 | other | upstream | 332061 | 34687955 ~ 34690946 (+) | True | si:dkey-30e9.6 |
| TU156680 | other | downstream | 126752 | 35151760 ~ 35153650 (+) | True | lypc |
| TU156686 | other | downstream | 155671 | 35180679 ~ 35183996 (+) | False | LOC110488391 |
| TU156687 | other | downstream | 155671 | 35180679 ~ 35183996 (+) | True | LOC110488391 |
| TU157479 | other | downstream | 760683 | 35785691 ~ 35787470 (+) | True | LOC110488639 |
| TU157485 | other | downstream | 830141 | 35855149 ~ 35856400 (+) | False | LOC100653444 |
