RNA id: XM_021560492.2


Basic Information

Item Value
RNA id XM_021560492.2
length 3535
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110488304
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35087176 ~ 35095775 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATGTTAACAGGCTGCCTGGGCAGGTTGGAGACTTCTAAAAGCAAGTCTGGCTACGGAACCTTTATGAGTTCAAACCTAAGATGAGGCATGGCTACGGAACCAATAAGAGTTCAAACCAAAGGACGAGGGAAGCGTTCTCTATTTACCTTTTGTTTTGCTAGCTAAGAACAGATCCGAGGTTAGCTAGCAAGCAaacagtggagggagagatggagagactacTGGTGATGAAAAAACATTATTTGTTGTCAATTAGATTTCATTTCAATGTCCATTATTTGCAGTCAATTtattttaaataatgttttttttcatGCAACGTAAGGTAGCTTTATagagctagctactgtactggtAGTATCGTCACGTCGTTAGTCTCCTGTGTTGTGGCTAAACGAGCGGGATTGAATGATAGTCTGGTTTTGCTGTCTCTCAAACTAGTTTTCCCCCTATGGTCCTAATCAAATTCTCACACATACAAAACGCAGTTAGTAACTGGCTAGAACACATAGCTAGTTGGCTAAAAAGAGAAGCAACTTTACCGTTatttggctagctaacgttagcttgctaactgGGCCTGGAATGGAGCCAGGTGATTTGCGTGTGAGCCCAGCCGGCTCCGGAGACCCCGAAGTGGGCGAATTGAGGGAAGAGACGCCTGGTGCGGATGCTGAGGTGAAGGGCGGGGAACCAAATGACAAGGAAATTAATGGAGATACAGCTGAAACGGTGCTAAAAGAGAAAGACACCTGCGAGGGAGAAGAGtgtacagagaaagagaagaacgAAGGTGAACTACACAGCCCATATGAAGAGGAATTGGATCCCAGAATTCAGGAGGAGTTGGAACACCTCAACGAGGCCAGTGTAAAAATCAACCAACTAGAACTGCACTTGGATGATGCCAGATCGGGTTATAGGAAGATCCTCACAGACTCAGCCAGAAAACTGAACGCCCACAGCTCCCAGCTTGGTACCTGCATCGAGAAGGCCAGGCCCTACTATGAGGCTCGTCGACTTGCCAAGGAGGCTCAACAGGAGACCCAGAAGGCGGCGCTGAGCTATGAGCGGGCCGTCTCCATGCACACGGCTGCCAGGGAGATGGTGTACGTGGCAGAGCAGGGCCTCATGGCCGATGGCAGGAACACCCTGGACCCCACCTGGCAGGAGATGCTCAACCATGCTACCTCCAAGGTGAACGAGGCAGAGGAGGAGCGCCTACGCAGCGAACGGGAGCACATGCGTGTCACCCACTCTTGTCAGACGGCAGAGGCTCGAGTCCAGACCCTGCAGAAATCTCTCAAGAGGGCCATCGTTAAGTCCAAACCTTACTTCGAGCTCAAGGCCCAGTTCAACTACATACTTGAGGAGCACAAAACCAAAGTGATGCAGCTGGAGGAGCATGTGACCAAAGTGAAAAACCGCTACTCTGTCGCCTTGCACAACCTGGAGCAAATCAGCGAGGCCATCCATGCTCAGCGGGGGCGGAACCAAACCGATGGTGGACAAACCATGGCCTGTGGTGGGCGGAGTCCCCCTATTGGGGCGGAGTCggacagtgtggtgtgtggtgtcgaGGGCGGGGCATGTGAAGGAGGGGCAATGGAGACCGATAGGGTGAACAGAAGCGGCGTGGCGGATAAGAAAATTGGGCTGGTGGAGAAATAcagggagagcgggggagagaggcCCGAGACgcatggagagagagcagggtcaGATTCCCTTTCCGTCTTCAGTCTGCAGACCATCGCTTCTGACCTGGAGAAATGCGATTCCATCGAACACCTCGGAGAATTTAGCGATGTGGGCAGTCTGCctggggaggatggagagaatgagagagggggaggaagggaaagaaGGGATGGGCAAATGCAGCGCCAACAGCAGTTCCTGAAGCAACATCACAGGAGCTTCAGCTTGTGAGAGCTGTCCTTATCGCTTATAGTTTATCAATTAAAAATAAGTGTCCGGTCGAGCTAGCTCATTATCCTGGCAAAAGaccaaaatataaaatatgaggaAAATCAGATCTGCTGTATCTAAAGTAACACATTTTAAACAGGGGGGTATGATATTCAGTAGTAGCGAAGCACAGGTACGTTGACAAGACCTGAAAATATAAGGAGCCTGACAGGTTTTGCATCATATTACAACACTACTGAAACTCCTAGACTGTACATGCCTCTGAGATTAGCTGCTTTACTTCCTTTATTCTGGCAATAACAAAACCTTAGACACATATGTCCTAGTGCATGAAGGAACAATCAAAGTAAGAGACTACAATAAACATGACAACTGGGAGCCCTATTCAATCTAAACGGTAGTAACTGAATTTCTGGTGTAAGATAAAATCAATGTTCTTTTGCAACAAAAAAGTAAGTGTGAATTCATATGTACGCTCCATTTTTGTTTCATACTGTAGATATGGTTTATTTTAGTACATAAATGTAAACGCGTATTGTAAAAAGTGCAAGAACAATTAGTTTTTTTGTACTTATTCTGAAAACCTGGTTTCAGGGTTCTAGTCAATAGGACCCCAAAACAAACTAGAGAGTTACAAACTCCATTCTGACAACTTGCTTGATGACAGAAAGCACTCCAGACTATTTATTTTGACTTTTATTATATGTGTATTAGTATTCAGGTCTAACTAAACATTTTTATAAATTGTTCATAAAATATTACGCTGGCATAATATTATGTTTTACTTGTTTAAATTTTAATAATTTTAAgatcctttgtttttgtatttttttaaataaaataatttcccTATATATTGTTTCTGTAGAGCCTCCTAGGTCGTAAACTGAAATGTGCCTTGTCCTTGACACAGTACTACGCAAACAAAGACAGCATAGCACTGGCTACAACAACACACTGTTCAGATCTGTGTATACAGTATTAAACTGTGGTCAACAGTTGAGAAATACTCCCATGAAGGACATGCTTTTGACCATATGTTTAATTTTAAATGTGAATCATCTATGAGTCATCCTAACTCTGTTTTGCCTGGACTTGtgatatttattttattaatttgaaTATGTTGTCTGTGTactgctttggcaaagtggaggGTACAAGAAATGTAGTCAATGGATTAAATGTAAGTTTGTGTATAATTACACCATTTATAGAGAAAATAATGAAATGTACAGATTTATTTGAATGTCTTTGTATAGTTATTTTAAAGGGATCTTATTTAATGCTGGTTATCTGCTGTATTCCTGAATCGACCTCCGTCTTTGTCCCGCTCTTTACATACTTCCAATAtatccatctcttcccctcattctctcagccatagaaatagaatgactagcaATTGTATTTCTATGCTTTCAACCCTTCAATCATTGTCCATTTGATGTCTTCCTCTTTATTTATTCATAAAGTGGTGCAGTAGTGTGATGTCACCCAGCTATATAGTACAGTTCACTGTTGTTATTTACATGTATGCAATATCAAACAGATAAACAATAAAATAAGAGGAATCTTGACTTTGCCATTTTAAGACCCAA

Function

GO: NA

KEGG:

id description
K23739 SH3BP5; SH3-domain binding protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156586 lncRNA downstream 69981 35016714 ~ 35017195 (-) True G136002
TU156567 lncRNA downstream 103011 34983524 ~ 34984165 (-) True G135983
TU156566 lncRNA downstream 112586 34974365 ~ 34974590 (-) True G135982
TU156512 lncRNA downstream 133724 34953080 ~ 34953452 (-) False ankmy2a
TU156915 lncRNA upstream 4390 35100165 ~ 35100983 (-) True G136280
TU156945 lncRNA upstream 12436 35108211 ~ 35112819 (-) True LOC110534832
TU156957 lncRNA upstream 32015 35127790 ~ 35128022 (-) True G136317
TU156958 lncRNA upstream 44633 35140408 ~ 35141438 (-) True G136318
TU156959 lncRNA upstream 45775 35141550 ~ 35141729 (-) True G136319
XM_021560477.2 mRNA downstream 615 35036471 ~ 35086561 (-) False LOC110488299
XM_036946845.1 mRNA downstream 615 35038638 ~ 35086561 (-) True LOC110488299
XM_021560421.2 mRNA downstream 104383 34966907 ~ 34982793 (-) True LOC110488264
XM_036946803.1 mRNA downstream 104387 34966907 ~ 34982789 (-) False LOC110488264
XM_021560429.2 mRNA downstream 105153 34966907 ~ 34982023 (-) False LOC110488264
XM_021560503.2 mRNA upstream 739 35096514 ~ 35099521 (-) True LOC110488311
XM_021560525.2 mRNA upstream 8093 35103868 ~ 35106886 (-) True LOC110488316
XM_036933765.1 mRNA upstream 12432 35108207 ~ 35122317 (-) False LOC110534832
XM_021560591.2 mRNA upstream 62708 35158483 ~ 35173960 (-) False LOC110488360
XM_036946921.1 mRNA upstream 62708 35158483 ~ 35173960 (-) False LOC110488360
TU156114 other downstream 482698 34604215 ~ 34604478 (-) True G135575
TU155089 other downstream 1221239 33865488 ~ 33865937 (-) True G134668
TU154709 other downstream 1862074 33212664 ~ 33225102 (-) True LOC110487618
TU154412 other downstream 2299055 32748208 ~ 32788121 (-) True G134102
TU154330 other downstream 2335598 32738829 ~ 32751578 (-) False LOC110514821
TU157060 other upstream 210592 35306367 ~ 35307729 (-) True G136399
TU157405 other upstream 578523 35674298 ~ 35675627 (-) False drd2l
TU157404 other upstream 578656 35674431 ~ 35675705 (-) False drd2l
TU158240 other upstream 1274229 36370004 ~ 36370328 (-) True G137479
TU158620 other upstream 1538418 36634193 ~ 36639005 (-) True G137839

Expression Profile