RNA id: XM_021560537.2


Basic Information

Item Value
RNA id XM_021560537.2
length 3394
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110488331
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35127970 ~ 35141476 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaatacaccccaggtatGACTAATGACGTCAGCAAGGTAGTGCACACTCACAGCTCCTTTCCGGTGTATGCAACTGCAGTGTTCTCGAGTTCCTGGTTGACATTAGGCAAAGGTGAGGAGTGTCTGGTGTGTGGGGGTGACTTGCACGGCAACCAACGGCGATGGCTCTTTGGGCGTCAGAACAAGAAAAATGGTCAGCCTCAGACCCCATCAGACTCGCTGGGCAGGGGAAGTCTCTCCAAGTCTTCTCAAAGTAGCCCctgggGTAGCACCATGTCTCTTGGCTCCAcggtctctctctcgtccctttCCTCACCTTCTAAAGCAATGGACCTTCTCTCTGTGCTGACACACATACTAGGCCAGCCCGTACCACGGGGCAGTGGGCGGGGGGAGTTCTTGTGTGGCAaatgtgtttcagttctagagcGGGTTTTCAAGTTTGACTCTGTCATTTCCAGGGTGAGGGTCTTATCCTCTGAGAGGCTTCAGAAGTTGACCCAGGAGAGGGACAAGGTCAGGCAGTGGGTACGCAGCTCTTACCGCCAGCGATGCCCTCAGGATTTCCGGATGAGGAGCAGCACTagtgaggaggatggggagggaaTGGGAAACCGAGAGGGTTACATTGAAATGTTGAAGGAGAACATGGCCCTGTCAGAGTATGAGTGCTGGTCTGAGAAATGGGACGCATGTCCATACTTCAGGAGAACGGGGAAACGATGCACGATGGGGAAAAATTGTGAGGGATGTGATTCTCTGAGGGTGTCCGACTCCGCCTATGAGTCAGTTTGTGGGGTTCCCCGCCGCCTACCCTTCCAACCCTTTTCCCCCTTGGCTCTATCGCGGGATAAGTCGCAGAGCATGCCTCTTCATTGGTCGAGAGTGCCGTCGCTAAGCTCTAGCCCAGCGTCATTGACTGGATCCGCTCTCTCCTTACGAGCATCCTCTCGCACTGAGTCCATCCAATCGCTGGACTCGCTGGGTTGCCGTGATCCATTTGATTTTCCAGATGATTTGTCACTCCTGGTCCTCAGAGAATTGAAAGGTATTGAAGGAAAGCCTGTCAGTTCACCTTCGGGGAGTAAGATTCCCGTTTTGGGTAAGAGGGAAGGGCGATATTCAGGAGAGGTGGGTGAGACATCCTCCCCTGAGGTAACAAGGGTGCTGAATTTTGGAGAGcgggagaatggaggagaggaagtggatgGAGAGACAAATGACGTTCTGACTGAATTGAGGGACGAGTTTATTCCACTACACAGAGAAAGTAATACAGGCCGAGTGCACCTTGCAGTCAGACAGTTGAGAGGACAGCTTGATCAAGCCATGACACGCATCAAGACCCTAGAAACTGAGCTTAAACACGGGACCAAAACCAAACCAGAAGCTAATGTCAGTGGACCAGAGGATTGGCTTAAGTTTCCGCAGAAGGACGGGGGAAACTTGCTACTGCAGAGTTTGGGGCATTCGTTGCTCAGCAGAGATAGAGTTATCCGGgaGTGCATGTGTCTGATCAGGAAGATGTGTGTTGAGGTGGGGACAGGGACTGATGTGGCTGACAGGCTAACACAGGCactcactgacaatctgaaacaAACTCTCTCCGACAATAAGCTAGTCCTGGAGGCTCTGCTCTCTGAggtgagtgagagggagaagaggatggagagCGAGCTGGAGGCACTGAAGAAGGCTGGGAGAGACCGGGAGAAAGACCTCTCCACACTCAACGCTGTGCTCCAATGTAACCAGGACATCATCAATGAACTGAGAGTGGAGCTGGTTGAGAAGGAGCGAGTGCAGCGGGAGGTGCAGAAGGAGAGGGAAGTGTGGAGACAGCGGGACCAGGCCCTCACAGCAGtcctacaggagaaagagtcactTCTCCTCTGCCTGAAGGAGGCACTAGAGAGCTCTCAGAAAGACATGCAGGCACTGTCTGACTCTGTGATTAGCCAAGGGGTGTCAGGAGGCGGGGCTGAGGGGGCTCTGGCCTCTCagttgaaggagaaggagagcctAGTGATAGCCTggttacaggacagagaggagcacAGCGCCGCCATGTGCAGGGAGTTCTCCAAGCTCACCACCGCCCTGCAGGACTATCAGGGTATAGTGCAGGAGCAACAGCAGAATCATAGTCAGACGGTGTCTTCGCTGTCAAAGCAACTCAACGACACACTCAATGACCTGAGGGAGAGCGGGAAGGAGAACAAGGAGGCACAGCGAGCCTGGCGGAGTGAAATGGAtgacaaagagagggaggagaggaaattgAGGGAGAGCCTGGAGAAGAGAGACAAACTCATTGAGCAAGTTCTCCTGGATTCCGAAGAACGGGATCATCTACTCAAAGAACTTCAACAGAACCTGCTGAACAAATTTGAACCCATGATTGCTGTAAAACACACATTATGAAAGAGACAAACAAGATAGTGAAAGAGCAAAAAAAATAGAACCATGAAGGTACAATGCACATTTTATATAGATGAGTTGCATGAACCAACATTTTCTCCAAAGGTAGTTTACTACTAATCACAATTGTATGTAGGCCCATTGAAAAGGTTGTGTTTTGCACATTTGCACTAGTTGCATCTTGCCTTAGCAGGCAAGCCTTGGTTTTTCTGTTTAAAACAATTTATGACTTTTACAAAACTCTTGACTGGATATTTGTCAATAGTGATGTTATTATTACTCCGTTTTGGCATCATTCATATTTGTATATTCATATTGATGAAGTATGCTAGTAGTTAATGTCTGACATGGACCAAAGTATATTTTGAAATATTTTGCTTAAATGCTAGTACTCTGTCAATGAAATGTATCGATACAGACAGTTCAAATAATTTCATTTCCCGAGAGTTCTATTTATGCTTATTCAAAATACACTTTGGTCCATGTCAGACATTGATTAACTAGTAGAATGGGACATGGGGAAATGTATGATGAGTTTTGTTAATGTCCTTCAGGGCATAGTGTAGTGCAGCCTTCTTGATACGTGCTATCAGAAGGGGGATTATTATTGTGTTGAATCTGGACAGTTTGATGTCGCAGTTTCCCAAGAGCTTTCTTTATTGGTGTCATACTGTAAGTTCTGTGattgtatttttttccccctgtgtCTTTTTGTCGGAATGGGCTATTTCTGTTCACACTGCCAATTTCTTTACAAATTAGCTACATCATTCTGCTTGGTATTGTGATTGTCATAAAGGGGTTTACATTTTTTAGCCCAAAATATTTTGGTACTTTTTGGCAGGTTTAATTTTACTACAGAATGGTTTGATACATTTATTTTGGGAAAAGGTTTAATTTTATGTCTgccatgttttaattttttttaagtcTTTGTGAGATTGAGAAATACAACTCTCTACATGATCGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156665 lncRNA upstream 3949 35123857 ~ 35124065 (+) True LOC110533739
TU156663 lncRNA upstream 4939 35122850 ~ 35123075 (+) False LOC110533739
TU156649 lncRNA upstream 25939 35101843 ~ 35102075 (+) True G136055
TU156638 lncRNA upstream 38682 35087279 ~ 35089332 (+) True G136044
TU156606 lncRNA upstream 79060 35042312 ~ 35048954 (+) True G136021
TU156677 lncRNA downstream 2259 35143735 ~ 35145446 (+) True G136079
TU156684 lncRNA downstream 16356 35157832 ~ 35158037 (+) True G136086
TU156696 lncRNA downstream 57866 35199342 ~ 35200486 (+) True G136097
TU156706 lncRNA downstream 91718 35233194 ~ 35239050 (+) False LOC110534843
TU156701 lncRNA downstream 92311 35233787 ~ 35238941 (+) False LOC110534843
LOC110533739 mRNA upstream 500 35122803 ~ 35127514 (+) False LOC110533739
NM_001124357.1 mRNA upstream 103006 35023007 ~ 35025008 (+) True tnf-alpha
NM_001124425.1 mRNA upstream 118308 35004580 ~ 35009706 (+) True lt-b2
XR_002468381.2 mRNA upstream 128029 34984948 ~ 34999985 (+) False LOC110488281
XM_036946911.1 mRNA downstream 9035 35150511 ~ 35151707 (+) True LOC110488356
XM_036946906.1 mRNA downstream 10325 35151801 ~ 35153635 (+) False lypc
XM_021560615.2 mRNA downstream 31098 35172574 ~ 35180466 (+) False LOC110488375
XM_021560610.2 mRNA downstream 31099 35172575 ~ 35180466 (+) True LOC110488375
XM_021560627.2 mRNA downstream 39174 35180650 ~ 35184002 (+) False LOC110488391
TU156467 other upstream 127459 34998396 ~ 35000555 (+) True LOC110488281
TU156464 other upstream 131218 34984972 ~ 34996796 (+) False LOC110488281
TU156498 other upstream 155213 34972449 ~ 34972801 (+) True G135920
TU156494 other upstream 156083 34971640 ~ 34971931 (+) True G135916
TU156107 other upstream 437068 34687955 ~ 34690946 (+) True si:dkey-30e9.6
TU156680 other downstream 10284 35151760 ~ 35153650 (+) True lypc
TU156686 other downstream 39203 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other downstream 39203 35180679 ~ 35183996 (+) True LOC110488391
TU157479 other downstream 644215 35785691 ~ 35787470 (+) True LOC110488639
TU157485 other downstream 713673 35855149 ~ 35856400 (+) False LOC100653444

Expression Profile