RNA id: XM_036946921.1


Basic Information

Item Value
RNA id XM_036946921.1
length 2185
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110488360
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35158483 ~ 35174193 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGATACGCAGCCACCCACTGAGTCGGTTAGCACGTCTCTGCTGAGTGAGAGAGGCAAAGCGGTGATGCGAGGTCCCCACTCTTTCCTTCTTGTACAAAATTTCCTCTTCCTTCCCGTTCGTGGTTGTATGTCGGCTCTTTAATAACACAAGTAACCACTACATCTTTACACACCGATAAAAAACGAAATGGTGTCCAGCACTGCACGCGTAAAAAGGGGAGCGCAAAACTCGCGATTTTAATTGTTTCATTTAATCAAGTTTTATGCAGACGTTCCTGGTTTAAAAGCACATATGCTAGTCTAAAGAAAGTTAAAGGAAGCACTGTCCGTGGTGAGCGAGGACCAGTCCATTTTCGAGTCGCCCTTCCCTGCCGCCACGACCATGCACATGAAGGGTGAGATGACGTCACCGGGAAGCTTCAGCCAGGCCTCCGAAGAGAGCCAAGAACCCACCGAGCCGGAGTGGGCCGGGCCGGGAGCACAGAACCctgggaagagaggagagcacaTCAACGGAACCAGTCGTGAGTCCCCTGTGGACTGCAGTGTGACCAAACGCTCTCGACACATGAGCAGCAACGATGGGGGTCAGCTGGCCTACCAGGCCTCATACCCTGAGCCCCGCGCCAGCCCCCAGACCGCCACCCCGCCCAACAGCgccacagaggagaagagagtcaTAGTGCCCGCAGACCCTGAGGTGTGGACCCAGGACCATGTGCGCCAGTGGCTGGACTGGGCCATCAAGGAGTACAGCCTGGAGGAGGTGGACATCATGCACTTCCACACACTGGAGGGCAAGGCACTCTGCAAGATGACCAAGGAGGATATGATGCGCCTCACGTCCGCCTACAACACTGATATCCTGCTCGGCCACCTCAATTACCTCCGGCAGAGCAGCCCTACTTTCTCCTACCCCACAACTCCAACCAACAACACACAGCAACAACCCAGACTACAGGTTAAATCAGAGAACAGTTATGAGGAGATAGGCAGAAGGAACAGCTGGCCATCGAACCCCATCACACCTCCAGTACCCAAAGGTTCTCCCATGGAGCACCAACACAGCACCAGAGTCACAGAGCCTCCACCGAGAAGTGTGCAAGACCCATACCAAGCATTAGGTCCCATCAGCAGTCGTCTAGCCAACCCAGAAGGGCAGGCCCTCCACTCCAAGAACCGAACAAGCAAACACAGTTCATACAGGCTGCCTGACCCCAGCGCTCACAGGcctgtggGCTCTGGACAGATCCAGCTGTGGCAGTTCCTGCTGGAGCTGCTGTCGGACAGCAACAACTCCAGCATCATCACCTGGGAGGGCACCAACGGCGAGTTCAAGATGACCGACCCGGACGAGGTGGCCAAGCGTTGGGGCGAGCGCAAGAGCAAGCCCAACATGAACTACGACAAGCTGAGCCGCGCCCTGCGCTACTATTACGACAAGAACATCATGACCAAGGTGCACGGCAAGCGCTACGCCTACAAGTTTGACTTCCAGGGCATCTCACAGGCCCACCAGGGCCACGGCGGAGAGGGGGGCATTGTTAAGTATCAGACTGAGGTATCTTATGCCCAGCCTTACCACAGCCACCAGCCAAAAATGAACTTCATGAACACACATGCCGCCCCTATGCCCGTGTCCCCTGGGAACTTTTTCGGGCCGCCTACAACTTACTGGAACTCAACAACCAGCCCAATGTATCCGGGGTCTCCCATGCCAAGGCACCCGGGGACTCACTCCCACCTGAGCTCATACTATTGAGGCCTGGGTGTCTTGCACTAGACTGGATGGGCTGGCAGAGCTTTCTGAAACAGACATATCCAAGATACCATCCACAATGTATCTGGTCTTTAATGTCAAAATTACATTGTAACGCTATGCGAGTTTTTTAATTTCTCAATTATGGAGGTTGAGAATGTTCATTTCCTGTGATTCAGTTTTTTGAAAAACCAAGTTTTTCAATTATGTAAGTATTTTGTTTAATATGTAATTGAGGTCATTGAAGGATTTAAGGGGAAAGTCAGTGTGGGAAGTGGTAAAACTGTTGAGGTCTTGATCTCAATTACTATATTCATTaaatctaacatttgtaaaagtATAATTGTACAGAATGTTTCATACAATTGTAGCAATAAAACATTTACCCCTGTAGTAATGCTAATAAAAGGAACTTGTATATTTga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156959 lncRNA downstream 16754 35141550 ~ 35141729 (-) True G136319
TU156958 lncRNA downstream 17045 35140408 ~ 35141438 (-) True G136318
TU156957 lncRNA downstream 30461 35127790 ~ 35128022 (-) True G136317
TU156945 lncRNA downstream 45664 35108211 ~ 35112819 (-) True LOC110534832
TU156915 lncRNA downstream 57500 35100165 ~ 35100983 (-) True G136280
TU156978 lncRNA upstream 1686 35175646 ~ 35176189 (-) True G136332
TU156988 lncRNA upstream 17128 35191088 ~ 35191671 (-) True G136340
TU157031 lncRNA upstream 71089 35245049 ~ 35284774 (-) True G136371
TU157107 lncRNA upstream 248906 35422866 ~ 35538723 (-) True G136433
TU157105 lncRNA upstream 252278 35426238 ~ 35426969 (-) True G136432
XM_036933765.1 mRNA downstream 36166 35108207 ~ 35122317 (-) False LOC110534832
XM_021560525.2 mRNA downstream 51597 35103868 ~ 35106886 (-) True LOC110488316
XM_021560503.2 mRNA downstream 58962 35096514 ~ 35099521 (-) True LOC110488311
XM_021560492.2 mRNA downstream 62708 35087176 ~ 35095775 (-) True LOC110488304
XM_036946845.1 mRNA downstream 71922 35038638 ~ 35086561 (-) True LOC110488299
XM_021560655.2 mRNA upstream 25384 35199344 ~ 35202809 (-) False si:ch211-225p5.8
XM_021560663.2 mRNA upstream 25384 35199344 ~ 35205128 (-) True si:ch211-225p5.8
XM_021560672.2 mRNA upstream 66588 35240548 ~ 35265648 (-) True LOC110488446
XR_005036528.1 mRNA upstream 133782 35307742 ~ 35308824 (-) False LOC118939540
XR_005036529.1 mRNA upstream 133782 35307742 ~ 35324682 (-) True LOC118939540
TU156114 other downstream 554005 34604215 ~ 34604478 (-) True G135575
TU155089 other downstream 1292546 33865488 ~ 33865937 (-) True G134668
TU154709 other downstream 1933381 33212664 ~ 33225102 (-) True LOC110487618
TU154412 other downstream 2370362 32748208 ~ 32788121 (-) True G134102
TU154330 other downstream 2406905 32738829 ~ 32751578 (-) False LOC110514821
TU157060 other upstream 132407 35306367 ~ 35307729 (-) True G136399
TU157405 other upstream 500338 35674298 ~ 35675627 (-) False drd2l
TU157404 other upstream 500471 35674431 ~ 35675705 (-) False drd2l
TU158240 other upstream 1196044 36370004 ~ 36370328 (-) True G137479
TU158620 other upstream 1460233 36634193 ~ 36639005 (-) True G137839

Expression Profile