RNA id: XM_021560615.2


Basic Information

Item Value
RNA id XM_021560615.2
length 2097
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110488375
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35172574 ~ 35180466 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATATGTTGTAATAGCTGTAGGATATGAAGAAAAGTAATGATAATTTCGTTATACGTTTCTGGAAGTGATTTGACTTCAGTGGACAAGAAACAGGATGGACACCTGCAATGCGTGAAAGGGAACGGGGAGTCACGAAGCAAGATGACACATTCCTTTGCGCCGGGGAGCAGGCACGCCCCTCCAAGCTCTGCTGCTTTATAACGGGACTGGGCCGGGCAGAGGGAGACTACACAATTGTAACTCTGAACTCCAAGTGAAAGCAACTGTTCCAGTCAAAGATGTACTGGGATACCATCCTGAAATCCAACGAGAGAAACATAGATACCAGAGACTCTAAAATAAAGATGGAGATATACCAAGCTGGATATTATAGGGAAGACTTCAGAACACAGGAAGTCCCTGCTGGTTTGGACTTTGCATCATATGACAGTAAAGGACCAgggcagcagcaacagtatccaGAGAGTTATGGAGAGCTGCAGAAGAATCCACGTCCGTACGACAACAAAGTAACCTCAAGTGACTCTGTCCTGTTCAACCTGGATTCATACCCAGAGTTTAACTGTTGGGCGTCATACCCAAGTGATGGGCTGACTTTGGGCCAGTCTCAAGCGGGGTTCCAGGATTCCACCCAGACGTACCACAGCCTTGTGCCCCTGTGTTCCCCAGCCCAGAGTGGACAGTTCAGCCCGGGCATGGAAGATGCCAGCACCAGCAACTCTTTCCTCCCTGGAAAAGGAACGAGCCACAGAGGGACCCCCAGCACTGTCAGCCTGGACCACCTCAATGAATCTGAGCAAAGCTACACCCGTCACTCAGGTGAAAAACTGTATGACTCAGAAGCACAGAAGACCTCCTTCTGGCCGGACTACCCCTCTCCCAGCTATAGCGCATCCCTGCCGCCCCCTCACCACCCTCCATCTTGTTCCTCAATCCCTGGACCACAGCAGCCCTCAGAGCTGTACTGCCCCCGTGTGGCCAAACGCAAAAGTGCACACTCCCAAAGACCCGAGAGGGAAGGAGGACAAGTGATGGGAATGTCAGTTTATCCAGGATCAGGGCCCATCCAATTGTGGCAGTTCTTACTGGAGCTGCTTCTAGACTCCTCCTGCTGTACCTTCATCTGCTGGACAGGAGACGGTTGGGAGTTCAAGATGTCCGACCCAGCAGAGGTGGCCAAGCGCTGGGGTCAGTGTAAGAACAAGCCCAAGATGAACTATGAGAAGCTGAGCCGCGGCCTGCGCTACTACTACCACAAGAACATTATCCACAAAACGACGGGCAAGCGCTACGTCTACCGCTTCGTCTGCGACGTGCAGGGGATGCTGGGAAAGACGGCACAGGAGGTCCTAGCCAGCCTGAACATTTTACCCACGAGTACAGAGTCAGCCTGGCAAGGCCAGGGGGCACCAGTATTATCGCCAGAGTCCAGCGAAGCATGGGCGTCGCAGTAGGGGGAGTGTACCAGCAGCTACATCACTAATatgctatgtagaacaaacatgcctcttaGACATGTAGAAAATGAATCACATTGGCTCTATTTATGGCATTTCTATCTGCACCATTAGACAATGTTTGGTGTAAGACTTTTATTACCAAGTGATACAGTAGTAGCCATAGAtgtgggaagtaggggtgcttcACTCCTGAAAATCAGAATAAACAAATTCTGTTGTAGCCTTCAATTAGATTTCATTTTAGTGTATGACTTACCTCCTATTAACATCAGCAGAATAAGAGCTCAATGAAACTGTAAGCCCAGCTGTCTCCAATACTGATGCTCTTTATGTTAATTACATGGTTAGTGATTAACAACCCCCCTCCATCCTCAAGTACTTCTTGCCTCTAAAATAATGGGTGCATGACACCACTTCTTACCACCCATGCTGTTGAACAATGTTCAACATTAACTTTGACTGTGAGGATCTATTTTTATACCCTAACATATCTACCTCTTTTATTGCTGACAAAGTAAAGCTAAGAGGGACCATGCTTGTTCTGTTGAATATAATGTGTATGATTTACATGATTTAGGGAACAATATTGTTTGTAAAATGTTTGTAAATAAACTGTACATAACTTGAAAATACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156684 lncRNA upstream 14537 35157832 ~ 35158037 (+) True G136086
TU156677 lncRNA upstream 27128 35143735 ~ 35145446 (+) True G136079
TU156665 lncRNA upstream 48509 35123857 ~ 35124065 (+) True LOC110533739
TU156663 lncRNA upstream 49499 35122850 ~ 35123075 (+) False LOC110533739
TU156649 lncRNA upstream 70499 35101843 ~ 35102075 (+) True G136055
TU156696 lncRNA downstream 18876 35199342 ~ 35200486 (+) True G136097
TU156706 lncRNA downstream 52728 35233194 ~ 35239050 (+) False LOC110534843
TU156701 lncRNA downstream 53321 35233787 ~ 35238941 (+) False LOC110534843
TU156704 lncRNA downstream 53321 35233787 ~ 35238941 (+) True LOC110534843
TU156757 lncRNA downstream 108911 35289377 ~ 35289644 (+) True G136144
XM_036946906.1 mRNA upstream 18939 35151801 ~ 35153635 (+) False lypc
XM_036946911.1 mRNA upstream 20867 35150511 ~ 35151707 (+) True LOC110488356
XM_021560547.2 mRNA upstream 31098 35127970 ~ 35141476 (+) False LOC110488331
XM_021560627.2 mRNA downstream 184 35180650 ~ 35184002 (+) False LOC110488391
XM_021560632.2 mRNA downstream 184 35180650 ~ 35184002 (+) False LOC110488391
XM_021560639.2 mRNA downstream 7359 35187825 ~ 35195853 (+) True dnajc28
XM_036946933.1 mRNA downstream 24715 35205181 ~ 35239245 (+) False LOC110534843
XM_036946942.1 mRNA downstream 24718 35205184 ~ 35239245 (+) False LOC110534843
TU156680 other upstream 18924 35151760 ~ 35153650 (+) True lypc
TU156467 other upstream 172019 34998396 ~ 35000555 (+) True LOC110488281
TU156464 other upstream 175778 34984972 ~ 34996796 (+) False LOC110488281
TU156498 other upstream 199773 34972449 ~ 34972801 (+) True G135920
TU156494 other upstream 200643 34971640 ~ 34971931 (+) True G135916
TU156686 other downstream 213 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other downstream 213 35180679 ~ 35183996 (+) True LOC110488391
TU157479 other downstream 605225 35785691 ~ 35787470 (+) True LOC110488639
TU157485 other downstream 674683 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other downstream 674762 35855228 ~ 35856400 (+) False LOC100653444

Expression Profile