RNA id: TU156687



Basic Information


Item Value
RNA id TU156687
length 855
RNA type TUCP
GC content 0.39
exon number 3
gene id LOC110488391
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35180650 ~ 35184002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGCGAAGATGTACAGTATCTTGAAGAGAAGCCTATTAGACAACATAGAATAGAAGACACATAGCCCAATCTCACAAAACCTGGTTTAAATTACAGGTTGGCATAAAATAGGCCAAAAACCGTTGGCGACATATTAATCGGTGTCTTTGAAGACTTGGGAGAACCTGAATTGAAGAAGTTCAGACGTAAACTCTGTGACCGCAAGCAGGAGCCAAAAGTTCACAAGAGCATTGTTGAGAAAGCGGGCCCAGTGGACTTGGTAGAGCTTCTGACCCGTACATTCACTGAATACGGGGCTGTGAATGTGGATATAGAGGTCTTGGGTGCAATTAACTTCCAGGGTGCAGCAGGGAACTGACGGATTTCAAGAAATCCTATTTTACAGCTCACAGATCTTGCGTAACATCTGGTGCTGCAATGGCTGGTGCACCTGGAAAAAAGAACATGATCAAAGacAAACACTTTGTGGACCATCACCGGACGGCCCTGATTGACAGAGTGAGCCAGGTGGAACCCCTACTGGATAGACTCCTGGAGAGGGGAATCATCACCCAAAACGCCTACAGTGAAGTGAGGGCTAACAGAACCAATCAGAAAAAGATGAGGGAGCTTTTCGACGGCCCTCTGAAAGCATGTGGAGCCAAAGGCAAAGATATATTCTTAGATATTCTGATGGATTTGGAGGCATTCCTGATCAATGACCTGAAGGGGGAATAATGAGGATAGGGGCCATTTTTCTTTTTTCTAAGGCAAGTGACAAAAATATGATGATAATAATGCACTCTGTTTGACATTATATTCTTAAATTGGAAAAATGAATTGTCTCCAACATTtgcaataaaataaacattttat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU156684 lncRNA upstream 22642 35157832 ~ 35158037 (+) True G136086
TU156677 lncRNA upstream 35233 35143735 ~ 35145446 (+) True G136079
TU156665 lncRNA upstream 56614 35123857 ~ 35124065 (+) True LOC110533739
TU156663 lncRNA upstream 57604 35122850 ~ 35123075 (+) False LOC110533739
TU156649 lncRNA upstream 78604 35101843 ~ 35102075 (+) True G136055
TU156696 lncRNA downstream 15346 35199342 ~ 35200486 (+) True G136097
TU156706 lncRNA downstream 49198 35233194 ~ 35239050 (+) False LOC110534843
TU156701 lncRNA downstream 49791 35233787 ~ 35238941 (+) False LOC110534843
TU156704 lncRNA downstream 49791 35233787 ~ 35238941 (+) True LOC110534843
TU156757 lncRNA downstream 105381 35289377 ~ 35289644 (+) True G136144
XM_021560615.2 mRNA upstream 213 35172574 ~ 35180466 (+) False LOC110488375
XM_021560610.2 mRNA upstream 213 35172575 ~ 35180466 (+) True LOC110488375
XM_036946906.1 mRNA upstream 27044 35151801 ~ 35153635 (+) False lypc
XM_036946911.1 mRNA upstream 28972 35150511 ~ 35151707 (+) True LOC110488356
XM_021560571.2 mRNA upstream 39203 35129214 ~ 35141476 (+) True LOC110488331
XM_021560639.2 mRNA downstream 3829 35187825 ~ 35195853 (+) True dnajc28
XM_036946933.1 mRNA downstream 21185 35205181 ~ 35239245 (+) False LOC110534843
XM_036946942.1 mRNA downstream 21188 35205184 ~ 35239245 (+) False LOC110534843
XM_036946949.1 mRNA downstream 21803 35205799 ~ 35239245 (+) False LOC110534843
XM_036946947.1 mRNA downstream 30914 35214910 ~ 35239245 (+) False LOC110534843
TU156680 other upstream 27029 35151760 ~ 35153650 (+) True lypc
TU156467 other upstream 180124 34998396 ~ 35000555 (+) True LOC110488281
TU156464 other upstream 183883 34984972 ~ 34996796 (+) False LOC110488281
TU156498 other upstream 207878 34972449 ~ 34972801 (+) True G135920
TU156494 other upstream 208748 34971640 ~ 34971931 (+) True G135916
TU157479 other downstream 601695 35785691 ~ 35787470 (+) True LOC110488639
TU157485 other downstream 671153 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other downstream 671232 35855228 ~ 35856400 (+) False LOC100653444
TU157722 other downstream 798836 35982832 ~ 36037741 (+) True G136994
TU157787 other downstream 915615 36099611 ~ 36100277 (+) True G137058

Expression Profile