RNA id: XM_036946942.1


Basic Information

Item Value
RNA id XM_036946942.1
length 5916
RNA type mRNA
GC content 0.52
exon number 21
gene id LOC110534843
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35205181 ~ 35239245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTTGGCCAGAAATTAATCAGttacagctcagagagagagttGCCGATAgcagcatacacacacaagccTTGCAGCAATGGTGGACCACTGTGACCTACCTCATGAAGccCCCTGCAACAGCGGGACATAGATCGTTATCTCTCCCACCGCAAGTTCAACCGTTGCTATAATGAGACCAAATGTGAGACTGCACGGCCTGTGAACTTGGCTCAATGTAAGAGGGAGAGCAGGCACATCGAAGGAGAGACGGAGACATTGGACAGAGGTGGAGTTGCGGAAGAGGAGGAAGTGAGGAACAAAACTACAGACTACTGACAAAAAGATGCAAAGAAGCCCCACGCACAGAGCATGAGATGGAGTGTTGGAAAATATTAGAGGGAGAAGACTGCGTTGTATTAGCTTTTTTAATTCAATAAGGGTCCCACCCTGGTTTCCTGCTGCAACATTATTGACTGAAATTAGGGGGAGAAGCTAAACGACTATAACCTAGTGTAGTACTGTCATGCCCTGCACTACCATGGAGAATAAAACCTGCCTTCCATAATGGCATCTTTCATACTGCACCATCTGGACGTCACTGGAAACATGAGGTACATTCACAAATCTTAGCCTAGCAGTCTAGGACAAGTCCACAATTGATTTGTATCAAAAAGCAGAAGTTTGATCGGATCTCAGACTAACTTCCTCAACATCCTGACCTAGTGTCAGCATAATTAGCTTCGCCACAGCAAGCCTTCATCGGGGTGTTTTGAAGTAAAACAATTGGTCTGAAGAAGCTCTGAGAATGATGACCATGTCTGTGCTGGCCACCGCCGGACCAGAAAGCGGGGTGACCCAGCTCGTCCCCATTCCCACGCTGAACATCCTTCCCCCGTCCTCAGACACTGAGGCCTGGTCCTGCTTTCCTAGCCCTCGGCCTCCCCGCCGCCACCGGCTCACCCACCCCCACCGGAGCAGAGGCCGGACCAAGAAGAGGAGCGATGGAGAACAAGAGGAGTCATCCAAACCCCGGTGGAACGGCActgaggaggagggggtagagagggtgaaggggagcGCTACTCCTCAAGGAagcccctcacctctcccttcaCCCCTCTTGCCCCCCCACGTGGAGGACACAGTCCTTGGCCCTTCCCTGGACCTCTTGCTACCCCCGTCGTCTCGCATCTCCTGGTCACGTAGCTCGTCTCTCGGCCGGCGCTCACGCTGGTCCCTCAGGAGTCTGCTCAGCAGGGAGTCTGACTGGGACAGCTGCAGtaccGCCAGTAACTCTCCGCGCAGCACCCCTGGCAGCTCCCCCTCTCTGCGCCGTCGGGTGCTGGggggtagtggtgggggtggaagcAGGACCAGTGACGTGGAGGGTGGCCCGGGGGAGCGCAGTGGGGAAAGGAGAGGTTCGGACAGCCCCCTGCCCTCCGCCGCCGCTTCCGCATACCCTGTCGCCTCACGCCATTTCAGCCGCAATGCCAAGAAAATGCAGAGCTGGTACAATgttCTCAGTCCAACTTATAAACAGCGCAATGAGGATTTCCGTAAACTCTTCAAGAAGCTGCCAGACACGGAACGCCTCATAGTGGacTACTCATGTGCGCTGCAGAAAGACATTCTACTCCAGGGGAGACTCTATCTGTCAGAGAACTGGCTCTGCTTCTATAGCAATATCTTCCGCTGGGAAACCACTATCACAATCCTGCTGAAAGATGTGACCACCCTGACCAAGGAGAAGACTGCCAAGGTCATCCCCAACGCCATTCAGATCAGCACCGACCACGACAAGCACTTCTTCACGTCTTTCGGGGCGAGGGACCGCAGCTACATGATGATGTTCAGACTGTGGCAGAACGCACTGATGGACAAGCCTCTGTCCCCAAAGGAGCTGTGGCACATCGTCCATCAGTGTTACGGCACTGAGCTGGGCCTCACCAGTGAAGACGATGACTATGTCTCCCCCACCGACGAGCACATTAACGGTCTACTGCCAGTGGAAgagtcagtctctgtctctgacctGTTGGACCTCAGCTCCTTGGGGGCCATAGCTTCTCTGGGCAGCTCGCCCCCCTCCATGGCAGCCTTGTTCCCCAGTGGCCCCCTCTTAGCCAGCGGTGGTCTGGGCTCCTGTCCCCCCTCATCTACCTGTCTGCCCGTAGACATCCCTGGCAGCCCCTCCCTCGACCCCCCGGACCCCAGCCCGCCCAGCTCCCAGAGCTCCCtgccctccaccacacacaccgCCTCCTTGTCCGCCCCCGCCTCGGCTGCTGCCTCTTTCTATGTGGAGGAGGACGGGGACTTCCTGTTGGAGTCTGCCAATCACATGATGCCCCCGTCTGCCACCAGCCTGGGAAACCTCTCCTCATTGGACCAGCTCACCAACGACGACGAGCTGCCTACTGACCCCAGCAACTCCTCAGACACACAGGAAGAGGACGAGGTGGAGTCGTTCTGTGCGGACCTGGCTGGCCGGCTGCACATCAACATGGTGGTGCGCATGAGCGTGGACAAGCTGCATGACCTGCTCTTCTCCGCAGACACACACTTCATCCAGCATCTCTTCTCCCAACGGCACTTCACAGacCTGTCAGTTCGCGAGTGGCAGCAGGACAGCTGCAGTGGGAACACCAACCGGATCCTGAGTTACACCATCGCCATCAACAACCCCCTGGGCCCCAAGACCGCCCCCGTAGTGGAAActcagACGCTGTTTAAGAACAGTGCGCCGGGCGAGTGTTACGTGGTGGACTCGGAGGTCATTACCTCGGGCATCCCCTACCAGGACTACTTCTACACCGTGCACCGCTACTGCCTCACCGCCATCAACAAGAACAAGAGCAGACTCCGGGTGTCGTCAGATATCTGCTACAAGAAGCAGCCGTGGAGCCTGGTGAAGGCGCTCATCGAGAAGAACACCTGGAGTGGTATCGAGGAGTACTACAGACACATGGAGAGTGAGGTGTGTAAGCTGGAGaccctgctccagtctgaggtgTCAGTGGTGACCTCTGGGGATGTGGTGGGGGCAGACTCTGCCAAGACACCCCCGGCCCTGCGGCGACGCAAACGCACCTGCTCCCGGCGCCTGGCGGAccgggaaagagagggaggtggcATGGGAGGTGGAGAGCGCGGGGACCGGGGAataggagaggagcggagagaggcgGGTGGTCAGTACAAGCACGGAGAGCGGTCGCGTGGCGGAGGCAACAGCATCTCTACCATACTGCTCATAGTCAGCTTCATtCTGGTGGTGTTGGTGGCCCTCAACATGCTCTTGTTTTACAAGCTGTGTTCTCTGGAGAGAGctgcacacacactggagacgtggcactccttctctctgtctgacaGTCCTCTACCCCAGTCGGCAGGAGAGTGGGCCCAGGTGTTGCAGCTCCAGAGACAGTTCCACCAGGCCCAGCTGGGCAAATGGCAACAGATCCTCCAATCCTCAGTCACTCTGCTAGACCAGatgAAACAGTCGTTGGAAAAGCTCCACCGAGGCGTCGTCACTCCAGAAGTCCAGCAGGATCCCCCCTCGAACCCCACTTCAGAGTCTCTCACTGAGCActgatcctccctccctccaccctccaaccTCCAGCCCTCAAGTGGGTATGAATGGACCACGGGGGGAGAGAACCAAGGTGGAGGTGGCCAGAGGGGGAGGGTCCAGCTGGGCCAATCAGGGAGAGTGACTCTCTCACCTGAtcccacaCCTCAGTCTGAGCAACCTGCAATGAGGTGGGTGGTGAGTGACCTTTAGGGTACTACACTACCCATAACTCCCCACACCTCAGTCTGAGTAACCTGCAATGGTAAAGTCCCACCTTCTCTCACGCCCAGACAGACTGGGAATGTCTTCAGGACTACAGCAATAACATAGCACGGTGAGCCAACCATATCTCCCACAGTCAGGGCTAAAGGCTGGCCAGTTTGTATAGTACCATCTGCTCCTCACATGCAACCAACCATGCTGCTCACGCTGAACCATCTCCCCTGCCTGAGAATCCAAGAGACATTTTCAAAAGAAAACGGACGATCTACTGCATTTCAACATGTGCAGCCCTGCTGCTGCGTTTCAAATGGACAGACTCCGGTCCAGCGCATTTCATAACGGACTGACTTGACTTGGACCGACTGCATTTCTCAAAATGGGCCAACCCAGATTTAACTTTGCGTTTCAAAATGGATGGACTCTGACATTTGGGAAATTGGGAGCTTTCCCAGCCCTGATAAACAGCTATGGCTCTGTTCCCAGCTGAAGCCAGCCTAGGGGACTTATGTGCCTCGGTGTGAGGGGTCCGCTCAGCTAAGTCCCCCTTGAGCCTCTGGAAATGAGGGACACATGACGAGGGAGGGGAAAGCTCTGATGGATTACAGAAAGTCTCCTGTttctaacacttttttttttttcgttctctctctctctctccatctgggATCAGCAGCTTCCATCTTAGACTTGATCTGCTATTGGAGAATCATTTCCAAAcaatactttattttttattttttagacgTTAATAATCCAAAAAGACTCCTAAATCCTCTACTAGCTCGTTTTTATCGTTAGCTGTCTTTTTGAGGGGGACTGGGTTGTTTCGAGAATTGCGAGCGAGCGAATGATGAGTGTGCGCGCCAGACCGTTCCAGTATTTATTTAGCACGACTTTGATTTCGAAAAGTCCTGTCCCGCTCGCAACGCGAGTGATTTCTTTTCCCCCTATATGTTCTGTGTTAATGCTTCAGCGCGGACCAAGAAAGAGCTATTAAGTTCATCTTTTATATTTAATGGTCATAGCAATAAGGATATTTGGTGATTTTTATACTACTTTTGAATGTGTAAAAAGTAGTATATCACTAAAGTGTGTTTTTAGGGCAAAATGAGACAAGCAAGCGAAGATCTGGAGTTGGACAAGAAGACAAAGATATATGTGTATTAGAAAGGAGTGTCCTCATCGTCACATTGTCACTGTTACATTTGGTATTATTAAGATGAGTATGATTGAGTTTGTTTTTGTCGGatactttttcttttttttcttgcaCTTGGTCAACTTCTAATTGTGTTATTGGATTGGACTTGGAAGTGTTTCAGGGTTACTGACTGTACTCTGTAGACCCAggctctgcgtcccaaatggcaccccattccctttatagtgtagtgcactacataggaaataatGTGCCCTTTGGGACGCAGACTTTGTAGACCAGGTAAACAGAGAGATGCGATAAAGGAGTGACTTTCTAGTGTAAACTGGGCTGGACTTAAAAAGGACCAACCAGTAGTGTAGGCCTGGATAAAGGGAAATGTTGCAGTATTGTTTTTGTGAGTTCAAATTGATGTTTATATGTTGTTCCTTTtcattttatatctttattttgtAGTCTGTCTTGTTTCTTCTTGTTTTTGTTTGTCGGAGGGTCATCTCATTTTATTTTCTGCTCACTCCCCCAACCTCTGATTCCCGCTCACTGTCTATCAAAAACCGTCTTCTCTTTTCCTAATTATTTTCCCTTTCATCTCCCCTCCTGTTGTCTttttcactcttcctctctctcttccatcgtTGTACTGCCCTCCCCCACTCCTTCCGTCTCTTGCCTGTGCACTGAGTAAGTCAGCTGTGTAAGTGTGTGAGCCTTGCTGTGCACGGCCAAACAGTGAGTGATCAAAGGATGTACTGTATTTATTAGGTTCAGGGAGGaaagtggggtggggggggggggggtcgggggAGCAGATGTACTGTAAAAGAGTTGATTGTACACAATGCCCTGGAGAGAAATGAAAAGCTCTAAAATATGCAACAACTCATTGgagtgttattttttttaaagtgtgtgtgtgtgtcatctacCATTTTCATAAAGTTTAACTAAAAAAGTATTTCAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156696 lncRNA upstream 4698 35199342 ~ 35200486 (+) True G136097
TU156684 lncRNA upstream 47147 35157832 ~ 35158037 (+) True G136086
TU156677 lncRNA upstream 59738 35143735 ~ 35145446 (+) True G136079
TU156665 lncRNA upstream 81119 35123857 ~ 35124065 (+) True LOC110533739
TU156663 lncRNA upstream 82109 35122850 ~ 35123075 (+) False LOC110533739
TU156757 lncRNA downstream 50132 35289377 ~ 35289644 (+) True G136144
TU156824 lncRNA downstream 151823 35391068 ~ 35391284 (+) True G136199
TU156826 lncRNA downstream 154063 35393308 ~ 35393788 (+) True G136201
TU156827 lncRNA downstream 155499 35394744 ~ 35395183 (+) True G136202
TU156779 lncRNA downstream 164463 35403708 ~ 35405944 (+) True LOC110488522
XM_021560639.2 mRNA upstream 9331 35187825 ~ 35195853 (+) True dnajc28
XM_021560627.2 mRNA upstream 21182 35180650 ~ 35184002 (+) False LOC110488391
XM_021560632.2 mRNA upstream 21182 35180650 ~ 35184002 (+) False LOC110488391
XM_021560615.2 mRNA upstream 24718 35172574 ~ 35180466 (+) False LOC110488375
XM_021560689.2 mRNA downstream 54854 35294099 ~ 35307452 (+) True LOC110488465
XM_021560697.2 mRNA downstream 86031 35325276 ~ 35334443 (+) True LOC110488474
XM_036947031.1 mRNA downstream 157090 35396335 ~ 35405972 (+) False LOC110488522
XM_036947025.1 mRNA downstream 157356 35396601 ~ 35405972 (+) False LOC110488522
XM_021560752.2 mRNA downstream 157424 35396669 ~ 35405972 (+) False LOC110488522
TU156686 other upstream 21188 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other upstream 21188 35180679 ~ 35183996 (+) True LOC110488391
TU156680 other upstream 51534 35151760 ~ 35153650 (+) True lypc
TU156467 other upstream 204629 34998396 ~ 35000555 (+) True LOC110488281
TU156464 other upstream 208388 34984972 ~ 34996796 (+) False LOC110488281
TU157479 other downstream 546446 35785691 ~ 35787470 (+) True LOC110488639
TU157485 other downstream 615904 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other downstream 615983 35855228 ~ 35856400 (+) False LOC100653444
TU157722 other downstream 743587 35982832 ~ 36037741 (+) True G136994
TU157787 other downstream 860366 36099611 ~ 36100277 (+) True G137058

Expression Profile