RNA id: XM_021560752.2


Basic Information

Item Value
RNA id XM_021560752.2
length 3094
RNA type mRNA
GC content 0.53
exon number 11
gene id LOC110488522
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35396335 ~ 35405972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTGTCAGGTCCGCCTCCTACTCGCATACCTACACCGCGAGACAAAATGTCGGAAGTAGGCCTATCTAGttaagaaaaaaaacaatacatgGTTGCGGTTCTACAAGGTTTCGAATGGCTTTTAGGCAGATCGTGAATTCATTAATATATATAGTTTTTAAATTGAGGCTTTTAAATTGAAACTAAAATATATTCACTTCGGATCGAAAAATGTTCCTGACTTTCGTCGTGACCGTCCTTATGGCAACAGgctccactATGGCCATCTCTGTCCAGTGTCCTGTCAAGAGGTATGTGGTCATCCTGTTCCAGCCGGTCACGCTCACCTGCAACTTCCAGACGTCTTCCACGCAGCCGCCCGTCATCACCTGGAGGTACAAGTCCTACTGCAGGGACCCCATCCAGGCAGCCCTGAACCCCAGCAGTGCTGACAACATCCTGTCCCAGAACAACCCTAACTACAACGCCAACATTGAGTGTGCCGACAACTTGCGGACGGTGCGCATCGTGGCCTCCAAGCAGGGCAGTGCTGTTACTCTGGGCCTGGAGTACCAGGGGCGCAAAGTCAGCATCTTGAACAACGCAGACCTGAACCTTGCCCAGACGGCGTGGGGAGACAGCGGCGTGTACGTGTGCTCTGTGGTGTCTTCTCAGGATCTGACAGGAAACAGCGAGGACTACACAGAGCTCATAGTGCTGGAGAGAAAGTCAAATACCACTGATCTCCTGCCTGAGATTGACTTACTGGTTATGGAAGACTGGTTGTTGGTGGTACTGGTAGTGTTTGGCttcctgctgctgttgctcctcatAGCGATCTGCTGGTGCCAGTGCTGCCCCCACACCTGCTGCTGCTACATCAGCTGCCCCTGCTGCCCTGAGAAATGCTGCTGCCCACGGGCACTGTACGAAGCAGGCAAGGCGGTGAAGTCGGGCATCCCCAGCCACTACGCCCCCACGCTCTATGCTCCCAGCATGTACCCCCAGCCACCCTACGGAGGGGGCATGCAACAGCCCGGCATACCCATGCTGCCCCTGCCCCAGGGAATGGGCGGCCCCCCACTGCACCCCAACGGCTACGGACGGGAGTACGACAGAGCCAGCTCAGTTGGACAAGGCTCCGAGGTGCCTTTGCTGCATGACCAGGACAGTGGCGCAGGAGACCAAACTCGGAGTGGCTACCGTATCCAGGTGGACCCAGATGGGAACGCAACGCGGGCCATCTACTACATGGAGAGACAGCTAGCCAACCTGGACCCCACACGGTCTGGTGATGCCGGTGGGAAGTACAACCGCTtGGATGGGGGGATGAGCGAGGTGAGTTCCCTACACGATGACCCCCGGGGCCGTGGCGGCGGCCGCTCCCAGGCCCCACCCCTCGCCACCGTGTACGACCAGGATGAGGCCATGAGCACCATCAGCAGCGTGTCCGCGCACGGCCAGCGGGGGCGTGACGACTACCCGCGGCGAGGAGGTGGGCCCTCCCCCCACATGGGGGCCCAGGGACGCGCTCGCTCCATGGACAATCTGGATGACATCGCCCGCCGAGACCGCTACCCCAGAGACCCCCGGGATCCCCACGATGACTACCCTCCCCAACGCCGTgacggaggaggaggagccaGAGATCGCAGAGGCTCGGATGATGGCTTCAGCAGCCGCGGAGGCTACGACCGCGGCCGTGACTTTGACGACCGCAGACGGCGCGAGCCCTCCCCTGACGACCGTCGCCGCAGAGGCAGCCCGGTCAGCGGTCTCCAGGGGAGACGTAGCCGTGACGACCTGATGGCCATCGAACGTGATCGGGAGCGTGGTGGCGGCCGTGGCGGTGGGCGGGACGCCTACGATGATAGCTTTCTGTGGGAAGCCATGGAGAAGAAGCGCCTAGGCGAGCAGCAGAGGGCTAGGAGCCGCGAGCGCCTGGACAGCGACAGCGAGCGCTCGGACCGAGGCAGGGCCCCCCGCGGACCCCCTCCACTCCCCATGTCCCCGCCCTCCGCCTACCCCGTCCGTCGCTACGATGACAACTACCCAGCCCCTCCCCCGCCCCCCTACATTAGTGATGACGAGAGCTTGACGTCCTGCAAGAAGAGCAACCTGCGCAAGAATGGAGCCGTGAGTCGGGAGAGTCTGGTGGTGTGAGACGTTCAGTATCCCCCAACGTAACTGATCTGTCCCGTAACACAATTACCAATTGTAAATAGTACTAATGTTGCAAACTTGCTACCGTGATTTTATATTCGATGCCTAAACTAAGATATCAAAATTTGACGGTGGAAATATATGTACAAGTGACCTTATTGGGGTAATTTAGTAATTGATTGCTTCATATTTACTGAAAACATTGTCAGCCTTATGTCCTCTCAATTCATTTTAATGTACAGAATAGCTCTAACTGAAGTGCTAAGTGTAGTGTGTGGTTGAACATACCGAGGGCTTAATTAAAGTAGACTACGCTGGAATGGCAGTAGCCAAAgtaaaccaaaaagggtttttcaTTCACTCTTTTTAACCATTCATTTTCACCTTACAGTCATCTTACAGTCAATGTGAGTATGAATGTGAGCAACCCGGAGCTTTAAGTTTCTAAAGCAAGTATTCATTTGAACTTTTAGTTACTTACTGTGAGAAGTCATGGATTTATTTTATTGAAAATTAGATCATGCTGTACATTTGAAATGGAATAGATTTTATTAGGGCgggaggtagcctagcggttaagagagtTCTTCACTTAGTCGCTGTGCCGACTAAGTGAAAAATCTGCtaatgtacccttgagcaaggcactttacctTAATTGCTCTGTATAAGAgcgtctactaaatgactaaaatcgaataatagccatgttatttttatatTGCGTTTATCATCGTATTTAGAGTATTGGATTAGTTTTAACTGTCTGTCCAACATGTATTTGTCATGAATAATGTCAGCCataggcagattatatatatttttttacattgctaTGAAAAATGAACTTGCTGCATTGTTGTACAGTCTACTTGTCATACCCACTGTCCGTGCTGTGTTTACTGTGATTTACAACAGGCGTCATTTTACAATAAATATTTTTCAAAATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156827 lncRNA upstream 1486 35394744 ~ 35395183 (+) True G136202
TU156826 lncRNA upstream 2881 35393308 ~ 35393788 (+) True G136201
TU156824 lncRNA upstream 5385 35391068 ~ 35391284 (+) True G136199
TU156757 lncRNA upstream 107025 35289377 ~ 35289644 (+) True G136144
TU156704 lncRNA upstream 157728 35233787 ~ 35238941 (+) True LOC110534843
TU156842 lncRNA downstream 35758 35441730 ~ 35466376 (+) False LOC118939544
TU156850 lncRNA downstream 61925 35467897 ~ 35468365 (+) True LOC118939544
TU156857 lncRNA downstream 142576 35548548 ~ 35551647 (+) True LOC110488573
TU157245 lncRNA downstream 168152 35574124 ~ 35574329 (+) True G136554
TU157252 lncRNA downstream 171986 35577958 ~ 35578281 (+) True G136561
XM_021560697.2 mRNA upstream 62226 35325276 ~ 35334443 (+) True LOC110488474
XM_021560689.2 mRNA upstream 89217 35294099 ~ 35307452 (+) True LOC110488465
XM_036946942.1 mRNA upstream 157424 35205184 ~ 35239245 (+) False LOC110534843
XM_021560764.2 mRNA downstream 947 35406919 ~ 35429437 (+) False LOC110488530
XM_021560816.2 mRNA downstream 5281 35411253 ~ 35429385 (+) False LOC110488530
XM_021560808.2 mRNA downstream 5281 35411253 ~ 35429422 (+) False LOC110488530
XM_021560788.2 mRNA downstream 5281 35411253 ~ 35429437 (+) False LOC110488530
XM_021560771.2 mRNA downstream 5281 35411253 ~ 35431905 (+) False LOC110488530
TU156686 other upstream 212673 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other upstream 212673 35180679 ~ 35183996 (+) True LOC110488391
TU156680 other upstream 243019 35151760 ~ 35153650 (+) True lypc
TU156467 other upstream 396114 34998396 ~ 35000555 (+) True LOC110488281
TU156464 other upstream 399873 34984972 ~ 34996796 (+) False LOC110488281
TU157479 other downstream 379719 35785691 ~ 35787470 (+) True LOC110488639
TU157485 other downstream 449177 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other downstream 449256 35855228 ~ 35856400 (+) False LOC100653444
TU157722 other downstream 576860 35982832 ~ 36037741 (+) True G136994
TU157787 other downstream 693639 36099611 ~ 36100277 (+) True G137058

Expression Profile