RNA id: XM_021560771.2


Basic Information

Item Value
RNA id XM_021560771.2
length 5000
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110488530
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35406919 ~ 35431905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCCTCGAGGCGAAGGCACAGAACAATGCTGGTACACTGAGGAGACTGATTTCCAtatgggagagaaggagggagggcagTTTATTCCTCCCCTCTTGATGGGGCATGGTACAGAGAGGGGCGAGAGGTCTCTTGATGGCAGCGTGAGCGGTGGCGTGATGGTTAGAGTATAGTAGTACATGTGCTTGTTGTTGGAGACAGGCTTGTTGGCACTGAGGCTAGAAGCCCAAGAGAGAAACGCCTGTGACACTCACCTGACTGCACAGAATCCATAGAACCCGACAGACAGGATTTTTCCACCTGTGGAGACCCACAAGGGAAGCACACGCTCGGGGAGAACGTAGAACCGACAGAACCCGAGGGAAGGAACCGAGAGGGAGCCGGAGCCTGGTGCTGAAGCTGGTATGAGagaagATAAGGGAGAGGGCTGTTGAGGTGTCTGGGTGTGATTGGGCGCCCTCTAGTGAACAttattactactgctaccaccAAGCTGAGGAATCAGACATTTTCTGTCTTGGCTACTTTTCGCCCATTGAGCAATTCAAGAGGTCTCCGGTTCAGGGTTAAATAGACACCATGTGGTGTTTGGAGCTGCTTCTGCCAGTGTTGCTAATCATCAAAGATGTCAGTGGCCAGTGGAATGTATGGATACCCAGGGACATCTCGGCCATGACCAACTCCTGCGTGGTCATCCCCTGCACATTCATGTACCCGTCCGGTATCCGGCCACACCGCGGTACCCACGGCATCTGGTACTTTGGTCAGCCCTACCCCCAGCTCTTCCCACCTGTGGTGATCAAGACGCGCACAGACATCGTACATGAAAGTTACAAAGGGCGTACCAAGCTCATTGGGGACCTGCAACAAAGGAACTGCACCCTGCTCATCAGTAATATAGGTACAGAGCACTCAGGGAGGTACTACTTCCGTGCCGACCTGGGCGGTGCCAACATCTACACCTACCCAGATTTCTCTGAGCTCAAGGTGCTGGACCAGCCCAACATTGACATCCCTGAGGAGATAGTCGCTGACGAGAATCTGGAGTTGACGTGCTATGCTCCAGACAATTGTCCAGAGAATAGCCCAGAGATCCAATGGATGTACACAGACTACCTGCCTGAACCTGAGTATACCTCAGACTACGTGGAAGAGAGCAACACAGCCGTGCTGTCCAGCACGCTCATCTTCACCCCCAGGCCCATACACAATGGTCAGCTGCTGGGCTGCAGAGTCTACTACCCCAACACCACCCTGGTCTATGAGAGACTCATATCTCTGGATGTCAAGTATGCCCCTCGCTCGGTGATGGTGAACGTGTCTGTGGAGGTGATGGAGGGCAGCTCGGTAACACTGCACTGCGAGGTGGACAGTAACCCTCCTCCCAGGATCTCCTGGCTGTTTGGGGACCAGGAGCTGCTGTGGGACACGGCTTCCAACGCCTCGCTCTCCCTGGAGGACTTAACCCCCTCTCAGGAGGGCATCTACACTTGCGTGGGGGATAATGGCTATGGCGCCATGAACACATCCATGTACCTGGCTGTCTTGTACCCTCCCAGTGAGCCAGTGGTAAACAGCTCCCTGACCGTTTTGGAAGGTTCCTCCATCTCCCTGCAATGTAGCACCCAAGGCAATCCCGCACCCACCCTCACCTGGCTGAAGGACGGGGAGCTGGTGGGCACCATCACTGCCGAGGAGGTGTCTGTGCTGGAGCTTCTGGAGCTCACCCCTCAGGGAGACGGACAGTACCGCTGCCTGGCAGAGAACGAACACGGACGAGCCAGCAGCTCCCTAAACATCACTGTGGAATACGCCCCTGTCCTTCTGGAAGAGTCCAAGTGCACAGTGGTGAGGGAGGGAGTCCAGTGTGTTTGCATGGCTACGGGTAACCCTGAGCCCATCATCGAGTTCTACCTCCCCGACAAGAACATCACCATCAACGACACGGACGGCCGCTACAACTACTACACGCACACGGACGGCCACACGTCCACGGGCATGATAAAACTACGGGAGAAGGGCGAGCGCCTGGGCAACGGTGCTGTCAATGTGCACTGCAGCATTAGCAACATATACGGGTCGGAGAGCTTTCATCTGGAGTTACAGCAGGAGAAGAAGTACATGATGGCAGTGATTGTTGGCACCATCGGTGGAGTGGCTGTCATCGCCTTCATCATCGCAGCAGTGAGATATGTGGGCCATAACAACAAGAAAGAGAATGGCAACCCTGGGCAGGACCTGGTCTCTAAACTGGAGAACCCAGCGTTGTACTACAGCACAGTCAAGAAGGACAAACAATGTCTGAGGAAGAAAGTGCTTAAGACAGAGCTTCTGGGCTCAAAGTTTAACTCCATTCTAGAGGAGAGCACGGGAGAAGACGGGGATTATCAACCTGTGGGCTCTATGGCAGACCTGGAGAGGCAAGAGCTGAATTACGCCGCCCTGCAGTTTCTCGGGGGGCGCTCCAGGGATGGGGGGGCCTCAGGGAGGGGGGATGACGGCAGCGACTACACCGAGATCAAGGCCAAATGAATCGCGATCCTTCCCTGACCCATCGTCACCGCGGGACACAGTGGCAGCCATGTTGTCGCCCCCCTCCTCACGTCATTCGCCCCCTCTTCAAACGTCTTCCCCCCTCCCCCGTAGACTCCACCCCCAACCTTCACCGTCACACCAAGAACTCCCACCGTCTCCGCCCGTCCCTGAATCATCTCAAATGACGTCCCCGTTAGTCGACCCCCAAGCCTCCAAGGGGAACCCCAGTCACATCTCGCCACCCAGGACTGCTGGTAGCTACTTGCAGGGTCAGAACACGGCCCAGTGGACAATGTAAAAAGATCTTTGTATTATCAGCAGCTGTCGGTCTCCAGGCTCTTACTCTATTGTTCATAGTCAAACAATTCCCTCACAACAGGTGCAATGCgttagttactgtactgtatcatctAGATTCAATGTTGCTATTTCCATCTCTACACCATTAATTGTTGGCATTGCTTTTCTGGGGCTCCCCTTCTGTATGTCACCCTATATCATACTCATagctagcctggttaaaccagattGAACGCTGAGCTCACCAGTTTTCCTGTGAAACGCAGCGCAATCAGTTTGGATACCAGGCTAACTGTCTAGATCCATCCGTTATAGTTCTTCTCCACTGTGTCCGCTGCCAGTCGAAGTGTCAGGGAAAGGGGTGTGTTTTGTGCTTTTTCTTttcttatctctatttctgacccTGGATCTGGAGGAAATGAGggatctcttctctcttcctgatCCAGTGGTTGTCAACGCTGACCAGTGTTCAACAAACGTTAGGCCTGAtacacatccaattgaagccTGTCATCTTCATCTCACATATTCTGTTCCAACATATAGTTCAATAGTGATGTGTGCTGTGACTCTGTGGCTTTTGATGATGATGAGAAATGAATATTTCTTTGATTTTATATAAAGAGAGAAAATTGATACTCTTACAGGTTTGTGGAGCCTCGAACACAAGGTTCTGCTCGTGCAAGAAGTGGCCtgaatatttttgtttttatgcATTATAAGCACTGATTGCATTGTGTTTTGCTCTTGTGGAAATATGCCGGGGTAACACAGAATGTTCTATTTATTCCGTTGCCCATGATTTAATTACTAGTATTTTTGGACGATGTTTTGCTAAGGGTAAGTGTTAACTTATCCTTAAATGGGAACCAATGGATTAGAATACATTTTTGGATCAATCTGGCATACATGACTCCACTGTAACACTCGCACAGCAGGACAAAATGTATCTCGTtgagacaatgtgtgtgtgtgtgtatgtaaacagTGCTGAAAGATCAGCGAACACTGATCACTGTGGGTGTTTCAAAAGATCACTTTACCTGAGACCGCTTCTCACAAAATGTCTACTTCAATGGTTGTGAAGTGTGAAATCGATGCCTAATCCTATAGGGTTGTATCAGAGGAGGCATTTGAGTGGCACAACATTGAAGTTGTTATACCAGTTGGTTGTGCTATTCAAACATACTTGATCAACTCATCTAATGTAATCTCCAAGCTCACTAATGGCAACACTAGATAACAATGACTGTTAATACAATATTAATAAGCTGCATATGGATGGGTAAAAGGATACCAGTATACATTATGTAAATAAATACCCTGCATGACTATTATGCTGTCAGCCATATGTGTAGATACACTACGGTATGTACATGCTCACTATTGCAACAATGGTTTACACAGGCAAGTCGGATACAGGTTCGGTAACACTTTAACTGACTTCTCTGTCATAAGGGTGACATAACGctgtcataacataacacatgTCATTTTCGGTCATGAAAACTGATGTCAAAATACTGACAACCCTTTACACTGTCATGACACAAATGGGTATTTATGTAAATTAGTTGGCTAGCGGTATGCTAAGCCAATAACCTGACTGAAGCAAAGATTTGTGCCATGACGGTGTCAAGCTTATGTCAGCTGTCATGACTGTTTAATAACATATTTTATGTCATTGTTCTGACATGGTTAAGTCACTAGACCTAATGGCAGAGCGTTCAAGATGTGTTGCCCAACATTGAGACATGCCAATATGGACATCCGTTTAGTAACACTTACTGTCGTCAGTTCTCTTGAACGCCACATGGGGGGGTTTATTTCTTTCTAAACCTGGGAACAAAATGGAGAAGCGTTGTTCATGTCTTCTCTAATTTGTTTGTCACATAGTGTGTTGTAAAGCAGATTTGTACTTTCTTTACTTTGTggtattcattattattattgtgatgattttttttaaatatctttgACACAATAATTCCGATCAGAATTCTGCAATCCTTCTGCAAATTAGCACTGTTATTACTTAATGACAATAAGAGCTCTATGATGATGTTTGATCATTCTCTTTCTTTTACAAGTCTGTCCCGCCTCAAGCAAAGCCATCTTTCTTTGGGTCCAAACAACAAATAAATCAAGTAAACAACAGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156779 lncRNA upstream 5309 35403708 ~ 35405944 (+) True LOC110488522
TU156827 lncRNA upstream 16070 35394744 ~ 35395183 (+) True G136202
TU156826 lncRNA upstream 17465 35393308 ~ 35393788 (+) True G136201
TU156824 lncRNA upstream 19969 35391068 ~ 35391284 (+) True G136199
TU156757 lncRNA upstream 121609 35289377 ~ 35289644 (+) True G136144
TU156842 lncRNA downstream 9825 35441730 ~ 35466376 (+) False LOC118939544
TU156850 lncRNA downstream 35992 35467897 ~ 35468365 (+) True LOC118939544
TU156857 lncRNA downstream 116643 35548548 ~ 35551647 (+) True LOC110488573
TU157245 lncRNA downstream 142219 35574124 ~ 35574329 (+) True G136554
TU157252 lncRNA downstream 146053 35577958 ~ 35578281 (+) True G136561
XM_036947031.1 mRNA upstream 5281 35396335 ~ 35405972 (+) False LOC110488522
XM_036933778.1 mRNA downstream 10236 35442141 ~ 35444030 (+) True LOC118936739
XM_036933794.1 mRNA downstream 13196 35445101 ~ 35454058 (+) True LOC118936740
XM_036947069.1 mRNA downstream 34361 35466266 ~ 35470406 (+) False LOC118939544
XM_036947081.1 mRNA downstream 40218 35472123 ~ 35477382 (+) True LOC118939545
XM_036947099.1 mRNA downstream 60912 35492817 ~ 35498083 (+) False LOC118939546
TU156686 other upstream 227257 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other upstream 227257 35180679 ~ 35183996 (+) True LOC110488391
TU156680 other upstream 257603 35151760 ~ 35153650 (+) True lypc
TU156467 other upstream 410698 34998396 ~ 35000555 (+) True LOC110488281
TU156464 other upstream 414457 34984972 ~ 34996796 (+) False LOC110488281
TU157479 other downstream 353786 35785691 ~ 35787470 (+) True LOC110488639
TU157485 other downstream 423244 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other downstream 423323 35855228 ~ 35856400 (+) False LOC100653444
TU157722 other downstream 550927 35982832 ~ 36037741 (+) True G136994
TU157787 other downstream 667706 36099611 ~ 36100277 (+) True G137058

Expression Profile