RNA id: XM_036933794.1


Basic Information

Item Value
RNA id XM_036933794.1
length 3274
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC118936740
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35445101 ~ 35454058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aTGTACGAGGAGGAGAACGAGAATGGTAAGCCAGCAGCAGAGACATATGAGAATACAGAGCTTTACTCCAACGTCAAGGCTATTATGGGTGACGCCCCTGTCCTTCTGGAAGAGTCCAAGTGCACAGTGGTGAGGGAGGGAGTCCAGTGTGTTTGCATGGCTACGGGTAACCCTGAGCCCATCATCGAGTTCTACCTCCCCGACAAGAACATCACCATCAACGACACGGACGGCCGCTACAACTACTACACGCACACGGACGGCCACACGTCCACGGGCATGATAAAACTACGGGAGAAGGGCGAGCGCCTGGGCAACGGTGCTGTCAATGTGCACTGCAGCATCAGCAACATATACGGGTCGGAGAGCTTTCATCTGGAGTTACAGCAGGAGAAGAAGTACATGATGGCAGTGATTGTTGGCACCATCGGTGGAGTGGCTGTCATCGCCTTCATCATCGCAGCAGTGAGATATGTGGGCCATAACAACAAGAAAGAGAATGGCAACCCTGGGCAGGACCTGGTCTCTAAACTGGAGAACCCAGCGTTGTACTACAGCACAGTCAAGAAGGACAAACAATGTCTGAGGAAGAAAGTGCTTAAGACAGAGCTTCTGGGCTCAAAGTTTAACTCCATTCTAGAGGAGAGCACGGGAGAAGACGGGGATTATCAACCTGTGGGCTCTATGGCAGACCTGGAGAGGCAAGAGCTGAATTACGCCGCCCTGCAGTTTCTCGGGGGGCGCTCCAGGGATGGGGGGGCCTCAGGGAGGGGGGATGACGGCAGCGACTACACCGAGATCAAGGCCAAATGAATCGCGATCCTTCCCTGACCCATCGTCACCGCGGGACACAGTGGCAGCCATGTTGTCGCCCCCCTCCTCACGTCATTCGCCCCCTCTTCAAACGTCTTCCCCCCTCCCCCGTAGACTCCACCCCCAACCTTCACCGTCACACCAAGAACTCCCACCGTCTCCGCCCGTCCCTGAATCATCTCAAATGACGTCCCCGTTAGTCGACCCCCAAGCCTCCAAGGGGAACCCCAGTCACATCTCGCCACCCAGGACTGCTGGTAGCTACTTGCAGGGTCAGAACACGGCCCAGTGGACAATGTAAAAAGATCTTTGTATTATCAGCAGCTGTCGGTCTCCAGGCTCTTACTCTATTGTTCATAGTCAAACAATTCCCTCACAACAGGTGCAATGCgttagttactgtactgtatcatctAGATTCAATGTTGCTATTTCCATCTCTACACCATTAATTGTTGGCATTGCTTTTCTGGGGCTCCCCTTCTGTATGTCACCCTATATCATACTCATagctagcctggttaaaccagattGAACGCTGAGCTCACCAGTTTTCCTGTGAAACGCAGCGCAATCAGTTTGGATACCAGGCTAACTGTCTAGATCCATCCGTTATAGTTCTTCTCCACTGTGTCCGCTGCCAGTCGAAGTGTCAGGGAAAGGGGTGTGTTTTGTGCTTTTTCTTttcttatctctatttctgacccTGGATCTGGAGGAAATGAGggatctcttctctcttcctgatCCAGTGGTTGTCAACGCTGACCAGTGTTCAACAAACGTTAGGCCTGAtacacatccaattgaagccTGTCATCTTCATCTCACATATTCTGTTCCAACATATAGTTCAATAGTGATGTGTGCTGTGACTCTGTGGCTTTTGATGATGATGAGAAATGAATATTTCTTTGATTTTATATAAAGAGAGAAAATTGATACTCTTACAGGTTTGTGGAGCCTCGAACACAAGGTTCTGCTCGTGCAAGAAGTGGCCtgaatatttttgtttttatgcATTATAAGCACTGATTGCATTGTGTTTTGCTCTTGTGGAAATATGCCGGGGTAACACAGAATGTTCTATTTATTCCGTTGCCCATGATTTAATTACTAGTATTTTTGGACGATGTTTTGCTAAGGGTAAGTGTTAACTTATCCTTAAATGGGAACCAATGGATTAGAATACATTTTTGGATCAATCTGGCATACATGACTCCACTGTAACACTCGCACAGCAGGACAAAATGTATCTCGTtgagacaatgtgtgtgtgtgtgtatgtaaacagTGCTGAAAGATCAGCGAACACTGATCACTGTGGGTGTTTCAAAAGATCACTTTACCTGAGACCGCTTCTCACAAAATGTCTACGTCAATGGTTGTGAAGTGTGAAATCGATGCCTAATCCTATAGGGTTGTATCAGAGGAGGCATTTGAGTGGCACAACATTGAAGTTGTTATACCAGTTGGTTGTGCTATTCAAACATACTTGATCAACTCATGTAATGTAATCTCCAAGCTCACTAATGGCAACACTAGATAACAATGACTGTTAATACAATATTAATAAGCTGCATATGGATGGGTAAAAGGATACCTGTATACATTATGTAAATAAATACCCTGCATGACTATTATGCTGTCAGCCATATGTGTAGATACACTACGGTATGTACATGCTCACTATTGCAACAATGGTTTACACAGGCAAGTCGGATACAGGTTCGGTAACACTTTAACTGACTTCTCTGTCATAAGGGTGACATAACGctgtcataacataacacatgTCATTTTCGGTCATGTAAACTGATGTCAAAATACTGACAACCCTTTACACTGTCATGACACAAATGGGTATTTATGTAAATTAGTTGGCTAGCGGTATGCTAAGCCAATAACCTGACTGAAGCAAAGATTTGTGCCATGACGGTGTCAAGCTTATGTCAGCTGTCATGACTGTTTAATAACATATTTTATGTCATTGTTCTGACATGGTTAAGTCACTAGACCTAATGGCAGAGCGTTCAAGATGTGTTGCCCAACATTGAGACATGCCAATATGGACATCCGTTTAGTAACACTTACTGTCGTCAGTTCTCTTGAACGCCTCATGGGGGGGTTTATTTCTTTCTAAACCTGGGAACAAAATGGAGAAGCGTTGTTCATGTCTTCTCTAATTTGTTTGTCACATAGTGTGTTGTAAAGCAGATTTGTACTTTCTTTACTTTGTggtattcattattattattgtgatgattttttttttatatctttgACACAATAATTCCGATCAGAATTCTGCAATCCTTCTGCAAATTAGCACTGTTATTACTTAATGACAATAAGAGCTCTATGATGATGTTTGATCATTCTCTTTCTTTTACAAGTCTGTCCCGCCTCAAGCAAAGCCATCTTTCTTTGGGTCCAAACAACAAATAAATCAAGTAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156779 lncRNA upstream 39157 35403708 ~ 35405944 (+) True LOC110488522
TU156827 lncRNA upstream 49918 35394744 ~ 35395183 (+) True G136202
TU156826 lncRNA upstream 51313 35393308 ~ 35393788 (+) True G136201
TU156824 lncRNA upstream 53817 35391068 ~ 35391284 (+) True G136199
TU156757 lncRNA upstream 155457 35289377 ~ 35289644 (+) True G136144
TU156850 lncRNA downstream 13839 35467897 ~ 35468365 (+) True LOC118939544
TU156857 lncRNA downstream 94490 35548548 ~ 35551647 (+) True LOC110488573
TU157245 lncRNA downstream 120066 35574124 ~ 35574329 (+) True G136554
TU157252 lncRNA downstream 123900 35577958 ~ 35578281 (+) True G136561
TU157265 lncRNA downstream 131971 35586029 ~ 35586280 (+) True G136573
XM_036933778.1 mRNA upstream 1071 35442141 ~ 35444030 (+) True LOC118936739
XM_021560771.2 mRNA upstream 13196 35411253 ~ 35431905 (+) False LOC110488530
XM_021560764.2 mRNA upstream 15664 35406919 ~ 35429437 (+) False LOC110488530
XM_036947069.1 mRNA downstream 12208 35466266 ~ 35470406 (+) False LOC118939544
XM_036947081.1 mRNA downstream 18065 35472123 ~ 35477382 (+) True LOC118939545
XM_036947099.1 mRNA downstream 38759 35492817 ~ 35498083 (+) False LOC118939546
XM_036947095.1 mRNA downstream 38764 35492822 ~ 35498083 (+) True LOC118939546
XM_036947104.1 mRNA downstream 52599 35506657 ~ 35512190 (+) True LOC110488566
TU156686 other upstream 261105 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other upstream 261105 35180679 ~ 35183996 (+) True LOC110488391
TU156680 other upstream 291451 35151760 ~ 35153650 (+) True lypc
TU156467 other upstream 444546 34998396 ~ 35000555 (+) True LOC110488281
TU156464 other upstream 448305 34984972 ~ 34996796 (+) False LOC110488281
TU157479 other downstream 331633 35785691 ~ 35787470 (+) True LOC110488639
TU157485 other downstream 401091 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other downstream 401170 35855228 ~ 35856400 (+) False LOC100653444
TU157722 other downstream 528774 35982832 ~ 36037741 (+) True G136994
TU157787 other downstream 645553 36099611 ~ 36100277 (+) True G137058

Expression Profile