RNA id: XM_021560843.2


Basic Information

Item Value
RNA id XM_021560843.2
length 3436
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC110488573
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35548120 ~ 35554239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taggaatgtagtgaaggaaaagtaaaagctgtcaaaaatagaaatagtgaagtacagataccccccaaaaaatacttaagtagtactttcaagtatgtTTACTTCAGTACTTTAAACCACTGCATGTTACAAACAGCCAATCTTAGAAATCTTATAGAAACTTTCTTATAGTGAAATAAAACTGCATCTGAATATAAAAGGCAAGGGGATTGTAGTGTTAACCAAGGTTGGGTGATGGTTGTGGATTGATGGGGTTATAAGGGTTGGTTAATGGGTTTGTGTTGATTATGGTCCATACAGTACAAGCATGGCTGGACGATATAGTACAGAGGAACTTCCTGGATTGCAGCACCAGGTTAGAGGGAGGAGTAACAGACTGGGGACATGAAGGGACAGTTCACACCCATCAGAGACTCACACAGGGCTCCTGATCAACAGGAGGAGAGAGCACTCAGAGAGAGGTAATGTGCTTTTTTCTGCATGGATCAAAAGACAAGCTATTTAACCATTATAGAGTTTTGTTTCGTTACATTGAATGACTGTTAAAACTTGATTATGACTAAGTAATATAATGGTAATATTCTATTATTCATTTAGGGCATTTGAACATATTGCTTCAAAAGGCTTTATATAGCCTAGGTATAAAGATTTCTGAATGCAGGTAAATATATTTATGAGCAGTTATTAATTAGCGCCTATGTTGAgcattatattgtattataaggAGTCACTCATAAGGAGTTATAAATGGGCTTGTAATGCATTATGAAGAAGGCATTCATATGAACCTTGAACATAAATGTTTCTTTGACATCCTCTCTAGGCATTACAGAAAAATACATCTTAGTTGAATAAAAGTGTTAAGAAGGTTGTTATGAATGCCACTGTAGCACTCATAAAGGTGTAATGAAATGTTAATGTCCGATGTGTATTGCTATATGTTGTTAATATCACAACACCATTTCATATTGTATTTCACACTTGTCTCCTGCTCCATACcagtagacacagacagagatagtgaccattagagaaagaggagaaagaggagagagacccCGGTGTTGTGGTTGATTCATCAAGGCAGTAGAGGCAGGATGTGCGTCCTCATCTGGGCagctctacttctctctctgacagagaGAACCACATGCCCAACTCTAACCCAGAAGCCCTCAGTGTTGACTCCTCCTCTGACAGAGGGAGAACCAACGACTCTGACCTGCACCGCCACGGGAATCGGCTCTGGATCTCCTCCTAAAATAACATGGAcatggagagggacaggagacaaCAACACTGAGCTTcgagacaacaccaccacacagaggagagaggacctgACCAACGTGACAACAACCCACTTCTCAACTTTGACCTTTACCCCCTCAGCTGAGCACCACAGCATGATGGTTTCGTGTCAAGTAACCTTCCAGAAAACATATACAATTGAAGAGACAGTAACTTTGAATGTGTCATATGTGAAAGACCCCCAAATAACTGGACATGAAATGGTGAAGGAGGATGGTACCCTGGAACTGACCTGCAGTGTTGACAGTTACCCTCCATCTGATATCACTTGGAGTAAGAATGGGACAAGTCCCTCACTTCAGAATTACACTGAAAATGCCAATCTCACCATCTCCAATGTGACAAGAGAACATGCTGGGGAGTATGTGTGTACAGTTCATCAccacaacaggacaatgacagcTTCCACCGTTGTCACTGTGCTGTACCTTCCTGTGATTCTTCCTGGCTCTGGGTGTGTGGACCAGGCAGAGGtcatgacctgtgtgtgtgtcagtcaggggGTTCCCTTACCCCTCATAGAGTGGCCACTGCTGGAGCTCAACACAGAGAACACAACGTCAGTGTTGGGTTCCTCAGTGAACAGCACCATCAGCCTgcttgttggaaactacaacaACATCACTGTGGAGTGTGTCAGCAGCAATGTGGTGGGTGTAGTGAGAGAGAAGTTGCAGGTCACCCAAAATAAGAGCCAAGAAAAGCAAGAAGATAAGGAATGGGAAGACCTTATAGCTATGCTGTCGGACCTAAAACTGATTGCTGCATTTGTGATTGGTGCAGCCTTCTCAGCCACCATCTGTTGTATCATCCTGTGTTTGACAGGGAAATGTAAAAGACAAAAGAAGAGGATCCCAAAGGATTCCAAAAGCCCTTTCATAAACCTGGAGATGGTGGCATGTGAAGACCAACAGACGGAtgcaggacaggctgtgggggGCGAACAGAACCCTCTGCAGTTGGAGCTGAGAGGAGGAGCAGAAAACGGAGGGACCCAGACCAGTGGAGCTACGGGAAAATTTGACACAAGGGAAGAACCAAATGAAGTGGACTACGCCAGTATCAACTACTCCCTGCTGAAGAAGAAGACTCCTGAGGAGGCCGAGAAGAAGACCACCACCGCAGAGTCAGAGTACGCCAAAATTAAACGAGAGAAGAAGAACGAAGGGGATGaaaatggaggagaggggagtggaatgatgatgatgatgatggggaaggatgaggagaaagagaatggtaagccagcagcagagacagaTGAGGATACAGCGCTTTACTCCAACGTTAAGGCTATTATGGGTGGTGGAGAGTGACGCACATATTTTCGCTAGAAACATGGGGGATAGCATGCAGTATTGTATAGCCATGTGTTCCTATATCATTTTTCTGAATTCAGATTGAATGTTTTATGTTGATACTGGGACTTTTGCTCAACTGAAACTACTGTAGTTTTGGTGTTGTTTCCTCATGTGCTGAAACAAGTTTGAATGTTTTATGATAATACAGAGATGTTGTTTAATAACTGAAACTACTGTAGTTAATAGTTTTGGTAAATgatttattttacagccctgtgtcagatggtactgtatgtatctggTGGTTGTACATTTTCAATAAGAATATTTTCTAGTTGTACATAGAAGCAAGTTTTGGTAATGTTTTTGTAATGTTTTTCAAGGAAGCGTCATTTAACTTTTTGTAACGATTCTGTTATGTCACCATAAGGAAGGACTGACAATGACGTGGTTTGGATAAGTCGAGAGGTCAAACCATTTCTTGTTTTTCTCCTCTttcatttcatttatttttatggGTGGGGATTTTATGTAGTATGTGTGGTTGTAACCAATATATTTCTGTACGTAGAATACTGATATACTGCAGTACATTTTGGCAAAATGCCATAAAGAATTCTCATTTTGGGCTAGCCAGAGAGCTCAAATTAAATAGTTAAAAAGTACTTAAAAGTTGTGTACTATAGATGGGTTGGTTGTTTGGCAACCAAACAGACGAGTGCACAACTATGGGGTAAAACAGACGGGTTGGTTTCGAATGTTGACGACATATTAACTATATTTCATCTCCAATGTTTTTtgaaaatataaatacatttgcacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156850 lncRNA upstream 79755 35467897 ~ 35468365 (+) True LOC118939544
TU156842 lncRNA upstream 81744 35441730 ~ 35466376 (+) False LOC118939544
TU156779 lncRNA upstream 142176 35403708 ~ 35405944 (+) True LOC110488522
TU156827 lncRNA upstream 152937 35394744 ~ 35395183 (+) True G136202
TU156826 lncRNA upstream 154332 35393308 ~ 35393788 (+) True G136201
TU157245 lncRNA downstream 19885 35574124 ~ 35574329 (+) True G136554
TU157252 lncRNA downstream 23719 35577958 ~ 35578281 (+) True G136561
TU157265 lncRNA downstream 31790 35586029 ~ 35586280 (+) True G136573
TU157275 lncRNA downstream 40296 35594535 ~ 35594840 (+) True G136583
TU157286 lncRNA downstream 46524 35600763 ~ 35600962 (+) True G136593
LOC110534853 mRNA upstream 7672 35526086 ~ 35540448 (+) True LOC110534853
XM_036947104.1 mRNA upstream 35930 35506657 ~ 35512190 (+) True LOC110488566
XM_036947099.1 mRNA upstream 50037 35492817 ~ 35498083 (+) False LOC118939546
XM_036947095.1 mRNA upstream 50037 35492822 ~ 35498083 (+) True LOC118939546
XM_036947081.1 mRNA upstream 70738 35472123 ~ 35477382 (+) True LOC118939545
XM_021560852.2 mRNA downstream 12963 35567202 ~ 35573160 (+) True LOC110488583
XM_036947175.1 mRNA downstream 189988 35744227 ~ 35749607 (+) False LOC110488622
XM_021560908.2 mRNA downstream 189988 35744227 ~ 35751886 (+) True LOC110488622
XM_021560918.2 mRNA downstream 205898 35760137 ~ 35777993 (+) False LOC110488629
XM_021560927.2 mRNA downstream 205898 35760137 ~ 35777993 (+) True LOC110488629
TU156686 other upstream 364124 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other upstream 364124 35180679 ~ 35183996 (+) True LOC110488391
TU156680 other upstream 394470 35151760 ~ 35153650 (+) True lypc
TU156467 other upstream 547565 34998396 ~ 35000555 (+) True LOC110488281
TU156464 other upstream 551324 34984972 ~ 34996796 (+) False LOC110488281
TU157479 other downstream 231452 35785691 ~ 35787470 (+) True LOC110488639
TU157485 other downstream 300910 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other downstream 300989 35855228 ~ 35856400 (+) False LOC100653444
TU157722 other downstream 428593 35982832 ~ 36037741 (+) True G136994
TU157787 other downstream 545372 36099611 ~ 36100277 (+) True G137058

Expression Profile