RNA id: XM_021560852.2


Basic Information

Item Value
RNA id XM_021560852.2
length 4178
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC110488583
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35567202 ~ 35573160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCACCAGGTTGGAGGGAGAAGTAACAGACTGAGGACATGAAGTGACAGCTCACACCCATCAGAGACTCACACAGGGCTCACAGTCAACAGGAAGagagagcacacagagagagAGCTGTGGACACAGACAAGGAGACCATAGAAAGAGGTGAAAGAGGACACATCCTGGTGTTGTGGGTGATTAATCGAGGCAGTGGAGGCAGCATGTGGGTCCTCATCTGGGCAGCTCTACTCTTCTCTCTGGCAGAGAGAGCAACATGTCAAAGACAGGTCCCTACTGCAGCAGCTCCATCAGCTGCAAACACAAACAGCATCATCTTCAGTCCAGAAGAAATAACAGCACAGACTGGCCTATGTGCTGTTATTTCATGTACTTTCAATCACTCTGATAGAGTCAAGCAGAACGCAGCAGTATGGTACAAATACCCTGCAAATGGCAAACGTAAAAAGGTTAATCATATAATTTTCCACTCCAAAAATTCCTCTAAAGCTCAGGAGGGTTATAACCACAGAGTGTATCTACTGGAGCCAGACCTGACAAAGGGGAACTGTAGCGTGATCATCAACGACATCAGAGAGAATGATGCTGGACAGTATCAATTCAAAATTAAAGGAAGAACATTTAAACTCACAGTAACAGCTCTGACCCAGAAGCCCTCAGTGTTGACTCCTCCTCTGACAGAGGGAGAACCAGCGACCCTGACCTGCACCGCCCCGGGGATCTGCTCTGGAACTCCTCCTAACATCACATGGAcatggagagggacaggagacaacatcactgagctcagagacaacaccactacacAAAGGAGAGAGGATCTGACCCGCGTCACAACAACCCACTTCTCAACTTTGACCTTTACCCCCTCAGCTAAGCATCACGGCAACAAGGTCACGTGTCTGGTGACCTTCAATGGAGGCGTCACCACCAAGAAGACACTGAAATTGAATGTGACACAGGAAGTATCTAAAGACATCTTGGCTATGCTGTTGAACCCACCACTGATTACTGCATTTGTGATTGGTGCAGCCTGCTCAGCCACCATCGGTTGTATCATCCTGTGTTTCACAGGGAAAAATAAAAAGCGCAAAGAGAGGACCCCAAAGAACTCAGACTCCAAAAGCCCTTTCACGAACCTGGAGATGGTGGCATGTGAAGACCAACAGAGAGATGCAGGACAGGCAGTGATGGGCGAACAGACACATCTGCAGGTGGAGCTGAGGGAGGGAACTGAAAACGGAGGGCTCCAGACCAGTGGAGCTGCGGGACACTCGGCCCCAGGGGAAGAACCAAAAGAGGTGGACTACGCCAGTATCAACTACTCCCTACTGAAGAAGAAGACACCTGAGGAGGCAGAGAAGAAGACCACTCCCACAGAGTCCGACTACGTCGAAATCAAACGAGAGAAGAAGAATGAGGGGGGAAAAGATGGTGGAGAGGGGAGTGGCGTGATGGAAGAGGTggaaggggagaagggggaggagatgaTAGGGAAGGACGTGGAGAACGAGAACGGTAAGCCAGTACGAGAGACAGATGAAGATACAGCACTTTACTCCAACGTCAAGGCTATTATTGGTGGAGAGTGACACAGCAATTTTGTCTAAAAACGTGGGAGATAGCACACAGTACTATCGCTTCTATTATACAGCACTGCTGTGTTTTCTCATATTCCAGACTGAATGTTTTATGATGATACAGAGACTTTGTTTAACTAAAGCTACTGTGGGTAATAGTTTTGGTACTTCTTTATTTTTCAGCCCTGTGTCAGCTGAAGCAAGTATTTCTGGGAGGGTTATACATATTTTTTAAGGAAGTTCATGTAATGTTACTTTTGTAATGATTCTGTCTTGTGTCACCATGGGAAGGACTGACAAAGACATGGTTTGGAGAAGTAGAGGTCAAACCATTTCATGTTTTGGCATTTTGATTTAATCCTAAACCTATTTATTGAGGTACTACCTTACTTTTGATGGTTGTGTGTATTTATAAATGTATGAGGAAAAGGAAGTAACCAGCACATTGCCCTTGATAGTAccactgatctttaataagcttttgtgagttttttaaaatagcacccttatgtagacctagccccacccacatccgttccacgCATCGAATGGGGTTGGAGGCAAGGTGAAAAACAAAtcagtgctaccaaatataacaatatgcatttcataaatattcgaataaagtgtgtacataaaacgtattaaaacacgtctgtaaaaccacaatgaggacatcaACCTACCAAGCAAGTTTTCATAAATCCTTGGGTACAGTGTAAGAAAAACGTCAGAGTAATCTGAAATAGGGGCATAATTCATTTTCAAATGTACAACATAAAATACATAGGCATTTCAAATTTAAGACCTTAAGGAAATAGTGTAtggagggtgaaaatcccaaaacattctcCTTTGCTCAGAGTATTATTTATCtcacctcccctgtctgatatcttaaccttctctatgccacaaaatctaaagGTAGAAATGTCATGTTTAGGTCATTAGAATGTACTGCGACTGTATAATCCCGGTCGTTTCTACTAATTGAATTTGTATGTTCACTGATTCTCTGTTTGAGAGAACGATAGGGTTTTACCTACATAGcacagcccacatggacatttaataatgTAGATAACATGAGTGGTGGCAACACAATCTCACATTCAATACGTGCATTTGTGTACATAATGCATTTTAGCAAATTGTGTGCGTATTTGTGTTGCTTAATTCGTGAGAAAATACACGAATTGATGTGCTACTTATTTCGTTCGAAAAGACTaatttaaccactaggctccaTACAAGCCTTTGCAAAAACCATTGACACGACAGCCTATATTTAATTGTTGTTCTTCTTTATGGCTAATTCGTCGTTATGAATATACAAAAATGTTGCCTTCATTTTATCCtgttttaaaatgtgtatttgtATGCCTATATGTACTGTTTTAGACTTGCTGAACAGAATTTGTGAGAAAATACACACATTACGTGCGACTTAATTCATGGGAAAAAAATTGTTTTATTAATGCCAATGCTGTTTTCTATGCTTGATTTCGTTTAATACTTTGGGATACTGGTGCACTTGTAATCAGAAAGGGCATTTTTTCGTATAGGCAACAGTACACGATTTTCGTCATTACGCATTACATATTTCGTGGAGCCTAAATTACACAATTGTCTTCATAATGCATTTATTACATGTTAAACAAgttaatgtaaaataatgaattatgTTGGCTTACACTTATGGCACTTCCAAGGCCTTTCCATGATGATTATTACGGTCATGCCAATCATGTTATATACTTAGGCTACTGTAACGCGTTCAAACCGTTAGCAAGTCAGAATGTCAGTTTCCAGGTACCGACGAGCACTTAAACGCTGTATTATGCTGGCTTCACATTCTCGTGGGAAATGGGAAGTTGTAACTCCGACATGATTGTGTTCAAGTGCTTTTGAATTCGGAACAATGTTTAAACCGATAAGATTGGCAATATAATTTTCTAATTTCCCACTTGTTATTCCTATTTGGGGGGTCATTCAAGTGAAACATCCCAGTAGGAACTAGGAATTTCTGAGAACTCCGATAGCATTTGAACGAGGCATTAGTATGTGTAATAGACAACAGTAGGGTCTGGGTCGCAGGGTGTCCAGCCCTCATACCCATTCACGACCACCGCGGAGCGAGTGTCAGTAGCCTACTGTGTGTCCGTAAAGTCAACTAGTATAATTATTGTTTGTGAAGTAAGTATGGTGATTATTATTAAGGTTCTGGTCGTCTGAGATTCCAACAGGCTATACAACAAACAGTATAACTATAGAATTAAGAAACTAAGTAAATAAAGTAATAATGAAATTAATGCACAAAATAAAATATAACATTGACAAATGTTTGGTTGCTTTAACATATCTACACAATTCTATTTTCAAGAAGCGGTACCAATGTTTAGCCTACATCCAATGTCTAGGCTACTGTCTTCAGatgtcttattcgactagtagttgttctgaaatgtttattgcttgcctacattttactccatcctctatgtttaatataacacacacatacatgaattATTAATTTCGGGTATCCTACCCTGATGTGAAGTTTGTTCTAtggaaagtatttgactctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156857 lncRNA upstream 15555 35548548 ~ 35551647 (+) True LOC110488573
TU156850 lncRNA upstream 98837 35467897 ~ 35468365 (+) True LOC118939544
TU156842 lncRNA upstream 100826 35441730 ~ 35466376 (+) False LOC118939544
TU156779 lncRNA upstream 161258 35403708 ~ 35405944 (+) True LOC110488522
TU156827 lncRNA upstream 172019 35394744 ~ 35395183 (+) True G136202
TU157245 lncRNA downstream 964 35574124 ~ 35574329 (+) True G136554
TU157252 lncRNA downstream 4798 35577958 ~ 35578281 (+) True G136561
TU157265 lncRNA downstream 12869 35586029 ~ 35586280 (+) True G136573
TU157275 lncRNA downstream 21375 35594535 ~ 35594840 (+) True G136583
TU157286 lncRNA downstream 27603 35600763 ~ 35600962 (+) True G136593
XM_021560843.2 mRNA upstream 12963 35548120 ~ 35554239 (+) False LOC110488573
LOC110534853 mRNA upstream 26754 35526086 ~ 35540448 (+) True LOC110534853
XM_036947104.1 mRNA upstream 55012 35506657 ~ 35512190 (+) True LOC110488566
XM_036947099.1 mRNA upstream 69119 35492817 ~ 35498083 (+) False LOC118939546
XM_036947095.1 mRNA upstream 69119 35492822 ~ 35498083 (+) True LOC118939546
XM_036947175.1 mRNA downstream 171067 35744227 ~ 35749607 (+) False LOC110488622
XM_021560908.2 mRNA downstream 171067 35744227 ~ 35751886 (+) True LOC110488622
XM_021560918.2 mRNA downstream 186977 35760137 ~ 35777993 (+) False LOC110488629
XM_021560927.2 mRNA downstream 186977 35760137 ~ 35777993 (+) True LOC110488629
XR_002475033.2 mRNA downstream 210795 35783955 ~ 35785664 (+) True LOC110533750
TU156686 other upstream 383206 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other upstream 383206 35180679 ~ 35183996 (+) True LOC110488391
TU156680 other upstream 413552 35151760 ~ 35153650 (+) True lypc
TU156467 other upstream 566647 34998396 ~ 35000555 (+) True LOC110488281
TU156464 other upstream 570406 34984972 ~ 34996796 (+) False LOC110488281
TU157479 other downstream 212531 35785691 ~ 35787470 (+) True LOC110488639
TU157485 other downstream 281989 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other downstream 282068 35855228 ~ 35856400 (+) False LOC100653444
TU157722 other downstream 409672 35982832 ~ 36037741 (+) True G136994
TU157787 other downstream 526451 36099611 ~ 36100277 (+) True G137058

Expression Profile