RNA id: XM_021619801.2



Basic Information


Item Value
RNA id XM_021619801.2
length 867
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110534863
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35609629 ~ 35610797 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGATCATTGCCATGAAAAGCTAGACCTAGCCTATCAAGTTGGATACGGCCCACTTCTGGTGTAATTCAAAGTAGTAACTGGGCCACATCTACAGTATATGCCAGCCCAAGTTTGGCCCTTATTGTGGAAAGGATCTGGCTTAGGTATGGCAACTGAATCTGGCTCACAGCTGGCTTTATTGTATAGAATTACAGACATGTAGCATGGGAAGTATGGATAGGCAGACTAACACCACTGTTGAGAAGTGTATAATACACTGTTTTCTTCCAGATCCCCCCAAGAAcacctcagtgtcagtcagtccctctagCTCAGTAGCAGAGGGCAGctctgtggctctgacctgcagCAGCAATGCCAACCCAGCAGTGAATAACTACACCTGGTACAGAGTTGAGGGATGGGAGAAGGACATTGTAGGGTCTGAAGAGAACCTCAACATCTTCAATGTAACCAGGCTTTCAAATGAACAGTACTACTGTGAGGCTCAGAATGTCCATGGACTGCAGAACTCTGAGGCCATCAATATCGATGTgacatTTGCTTCAGAGATCCAGAACACCTCTCGCTGCATCAGGATTTCAGCTACATCTCAGATCAGATGTTTCTGTGATAGCTTTGGAAACCCTGCTCCCACAGTGGTGTGGCAATTGGCTGGAGAGTCTGTCAATCACTCCACTAACACCATCATCAGGGAGGAGCCAATGGGCCGAGCCGGGCTGAGGAGCTCCCTCACCATCCGCCAATCACAGGAAGAGGAAATACCGAGTCTGGTCTGCCTCAGCTCCAACATGGATGGTTTTGACAGCTTCTCATTTAACTTAACATCAATGGAAACATATGAAGTTCAAAAGAATACAAGATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU157380 lncRNA downstream 2144 35606590 ~ 35607485 (-) True G136676
TU157376 lncRNA downstream 3069 35605701 ~ 35606560 (-) True G136675
TU157375 lncRNA downstream 3332 35605701 ~ 35606297 (-) False G136675
TU157371 lncRNA downstream 10601 35598666 ~ 35599028 (-) True G136671
TU157369 lncRNA downstream 11896 35597522 ~ 35597733 (-) True G136669
TU157387 lncRNA upstream 6446 35617243 ~ 35617497 (-) True G136680
TU157406 lncRNA upstream 77498 35688295 ~ 35700787 (-) True drd2l
TU157453 lncRNA upstream 140564 35751361 ~ 35751639 (-) True G136743
TU157454 lncRNA upstream 140963 35751760 ~ 35752076 (-) True G136744
TU157459 lncRNA upstream 143477 35754274 ~ 35754488 (-) True G136749
XM_036947128.1 mRNA downstream 200 35607541 ~ 35609429 (-) True LOC118939553
XM_021560726.2 mRNA downstream 229568 35366832 ~ 35380061 (-) True LOC110488492
XM_021560741.2 mRNA downstream 251638 35347843 ~ 35357991 (-) True LOC110488508
XR_005036529.1 mRNA downstream 284947 35307742 ~ 35324682 (-) True LOC118939540
XR_005036528.1 mRNA downstream 300805 35307742 ~ 35308824 (-) False LOC118939540
XM_021560863.2 mRNA upstream 18752 35629549 ~ 35662664 (-) False LOC110488593
XM_021560872.2 mRNA upstream 18752 35629549 ~ 35663662 (-) True LOC110488593
XM_036947146.1 mRNA upstream 53451 35664248 ~ 35668411 (-) True LOC110488606
XM_036947154.1 mRNA upstream 63494 35674291 ~ 35700846 (-) False drd2l
XM_021560895.2 mRNA upstream 92085 35702882 ~ 35726314 (-) True LOC110488613
TU157060 other downstream 301900 35306367 ~ 35307729 (-) True G136399
TU156114 other downstream 1005151 34604215 ~ 34604478 (-) True G135575
TU155089 other downstream 1743692 33865488 ~ 33865937 (-) True G134668
TU154709 other downstream 2384527 33212664 ~ 33225102 (-) True LOC110487618
TU154412 other downstream 2821508 32748208 ~ 32788121 (-) True G134102
TU157405 other upstream 63501 35674298 ~ 35675627 (-) False drd2l
TU157404 other upstream 63634 35674431 ~ 35675705 (-) False drd2l
TU158240 other upstream 759207 36370004 ~ 36370328 (-) True G137479
TU158620 other upstream 1023396 36634193 ~ 36639005 (-) True G137839
TU158866 other upstream 1215069 36825866 ~ 36828397 (-) False G138080

Expression Profile