RNA id: XM_021560918.2


Basic Information

Item Value
RNA id XM_021560918.2
length 4296
RNA type mRNA
GC content 0.48
exon number 17
gene id LOC110488629
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35760137 ~ 35777993 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCTTGGGTCTCGCAGGGTTAAAGATTTATAATACATACAGCTTTGAAAGTTCCTCATTTTCCAaagacacagtcagtcagtcaatcagtcagacaCAGTTGCAGTTGAATAGGACATAGAAACACAACATACTTCTTATTTGATCCTCCCTACTATTCTATCTGTTGGCAAAAAAAAGAGACATGGCTGGCGCTTTAAGATTCCTCCTCAGTGGCTGTCTGCTGCAAGgtgtTCTCTGTGAAGATTGGACAGCCTTGATGCCTCAGAGTATAGAGGCTCTGAAGGGATCATGTGTGCGCATTCCCTGCTCATTTACACTTGGTTCCATAAAGGCAGTGGACTATGATCCCTGCCTAAAAACTCACTCATGTAATGCCATTTGGATGAGAGGGGGAACAGATAAGACAAACACAGTAGGCTCCAGTCCATCTGGGAACTTGAACCAGAAAGACTGTACTACAATCCTGGACAACATGCCTACTGGTGACAAGCTTTACTTCAGACTAGAATGTGGCAACTGTGTCAAGTTTAATTTTGGCACACCTGTTCAAATCAATATCGCAGACACTCCCCCCACACCCACTCTAACCCCAGCTACAGTGGAAGTGAGGGAGGGGACCTCAGTGAGTTTGATTTGCTCTGCTGCAGCCCcatgtccctctctccacccaaCTCTGACATGGACCCCCAGTCTGGGTCAAAGTGAGGAGGGACTACAGGAGAATCAGGATAAAACTCAAGTTAAGACCTCTTCTCTGACCTTCACTGCTTCATACCTCCATCATGAACAGAATATCTCCTGCACTGCTCTCTACAAACAACAAGATGGCAAGAATGTCAAATCACCTGAAACTAGTCTGACCGTCACGGTTCTATTTTCTCCCAAGAAcacctcagtgtcagtcagtccctctggttCAGTGTTAGAGGGCAGCTCCATGACTCTGACCTGCAGCGGCAATGCCAACCCAGCAGTGAGCTAcacctggtacagagtcaatggagTTCAGGTGACAACAGTGGGGTCTAGCAGAATGCTAACTATCCAGGTGTCTGCAAACAACAGTCAGTTCTACTGTGAAGCCAGAAATGACCATGGAACTGAGAACTCCTCTGTCATTCAACTAGATTTGCCATATCCTCCCATGTATACCTCAGTGTTAGTCAGTCCCTCTGGTCCAGTGGTAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCAGCAGTGAAGACCTAcacctggtacagagtcaatggagTTCAGGTGACATCAATAGGACATGGAGAGAAACATCAGACCCAGGTGTACACAGATCAAAGAAAGTTCTACTGTGAGGCTAAAAATGTCCATGGAACACAGAACTCATCAGTCTTTGAACTGGATGTTATGTACTCCCCAAAGAAcacctcagtgtcagtcagtccctctggttCAATGATAGAGGGCAGCTCTGTGACTCTGACCTGCAACAGCAATGCCAACCCAGCAGTGAAGACCTACACCTGGTACACAATCAGGGGAGGTCGGGGGACACCAGTGAAGAATATGCCAGAGCTAACTGTCCAGGTGTTGACAGATAACAGCATGTTCTACTGTGAGGCCAAAAATGACCATGGAATCCAGAAATCATCTGCCTTTCAACTAGATATGATGTACCCTCCCAAGAAcacctcagtgtcagtcagtccctctgattCAGTGTTAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCAGTGGGGACCTACGCCTGGTACAGAGTCATTGGAGATCAGGTGACATCAATAGGACATGGAAACAAACATCAGACCCAGGTGTACACAGATCACAGACAGTTTTACTGTGGTGCCACAAATGACCATGGCACTAAGAACTCATCAGTCATTGAACTGGATGTATTGTATCCTCCCAAGAAcacctcagtgtcagtcagtccctctggttCAGTGTTAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCAGCAGTGAAAAACTAcacctggtacagagtcaatggagACCATGTGACACAAATTGCTAATGAAAGAGAGTTAAAAACGGAAGCATCTATAGACAACCACCAGTTCTACTGTGAGGCCAGAAATGACCATGGTACAAAGAACTCATCAATCATTCTACTGAATGTGCTATaCCCACCAAAAAACAGctcagtgtcagtcagtccctctagTTCAGCAATAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCACCAGTGGGGAGCTAcacctggtacagagtcaatcaaGAACAGGTCACAGAAGTGGGATCTAGCAGAATGCTAACTATCAAGGTACCCGCAGACAACAGCCAGTTTTATTGTGAGACCAGAAATCGTCTTGGATCCCAGAACTCATCTGTCACTCAACTAGATGGGATGTATCCTGCCAAGAACACCTCATTGTCGGTCAGTCCCTCTGGTCCAGTGGTAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCAGCAGTGAAGACCTAcacctggtacagagtcaatgggagggagggagtcattGTAGGATCTGGACAGAGCTTCACCTTCAATAAGATTGCTATCAATGATGGTGGGCGGTACTATTGCGAAGCAGAGAACAAGCATGGGGTGGACAACTCAACAACTACTTACATAGATGTGACATACCCACCAAAGAACACCTCAGTATCGGTCAGTCCCTCTAGTTCAGCAATAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCACCAGTGGGGAGCTACACCTGGCACAGAGTCAATCAAGAACAGGTCACAGAAGTGGGATCTAGCAGAATGCTAACTATCAAGGTACCCGCAGACAACAGCCAGTTCTATTGTGAGACCAGAAATCGTCTTGGATCCCAGAACTCATCTGTCACTCAACTAGATGGGATGTATCCTGCCAAGAACACCTCATTGTCGGTCAGTCCCTCTGGTTCAGTGGTAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCAGCAGTGAAGACCTAcacctggtacagagtcaatgggagggagggagtcattGTAGGATCTGGACAGAGCTTCACCTTCAATAAGATTGCTATCAATGATGGTGGGCGGTACTATTGCGAAGCAGAGAACAAGCATGGGGTGGACAACTCAACAACTACTTACATAGATGTGACATTTTCTCCAAAGATTCTGCCCTCCTCTCGCTGCATCAGAACTGCTGATCAGATCAACTGTACCTGTGAGAGTCATGGGAACCCCTCTCCCAAAGTGGAGTGGCGATTGGCTGGACAGCCTGTCAATCACTTTACTAACACTGTCGTCAGAGAGCGAATGGGCAGCACAGGCCTGAGAAGCTCCCTCACCACCCACCAATCACAGGAGGAGGACACGCCCCCTCTGGTCTGCCTCAGCACCAACTCTGTAGGATCTTCCAGCCTCCAGTTCTGTATTCAATGCCTGGGGAGTCACCAGGGGCTGGGCAAAAGCGTTGAAGTTCTTGAGGGTCAAGTTTCCTTGCCAATCTTCATCACTGCAATATTTGTTTCGGCATTAATGACAGCACTGATATGTGCTTTACTGTATCTACGAAAGGTTTGGTATCCTTGTTTTACGGTACTCAGAGGTCATTACAAATATTACGACAGTGATGTGGGGATGAACCTAGTTCCGACCAGTGGTGAGAGGACACAGGATCATCCTGCGCCAGAAGAAGACATATACGCCAACAGCAATGTACCGAGTCAGGCCAGGAGACAGGGACGCAAACAAGACCTAGAGGCCCCGAATCCGGGTCCCAAACCCCTGCCTTCCTCCAAAGCCATCTCTGAGACCGACCGAACCAGCCTGCCCAATCTAATCTCTGACACTGCTACAAATCCAGGAGAAGGCACTGCaaagaaggagggggaggatgtGTTTTATTCCAGTGTGAtttggaagaagaagaagtggatgaagaagaagaatgagggGTCCGTGGATGGGGGAAGGGAGGCATCTAGCGGTTCCTATCTGGAGGAGGAAAGGTGTGTGCTGGGAAATGTAGGCAGACACAGAATAAGTAAGTTACTGGAGATGGATCACCTGCAGTTTCTCTAGTTTTTCATGAATATAATGTAGGTCTATTGTACTTTCACAGAGATATATTGCTCTTAATGAAAGTATAACGCTGTCTTTTTCAccacaaaacaaataaaaacatgaaaTGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157358 lncRNA upstream 30616 35729233 ~ 35729521 (+) True G136658
TU157357 lncRNA upstream 31825 35727239 ~ 35728312 (+) True G136657
TU157277 lncRNA upstream 56209 35638113 ~ 35703928 (+) True G136584
TU157282 lncRNA upstream 123638 35635157 ~ 35636499 (+) True G136589
TU157307 lncRNA upstream 127729 35631404 ~ 35632408 (+) True G136610
TU157508 lncRNA downstream 33741 35811734 ~ 35813460 (+) True G136789
TU157483 lncRNA downstream 77235 35855228 ~ 35856701 (+) False LOC100653444
TU157484 lncRNA downstream 77235 35855228 ~ 35864731 (+) False LOC100653444
TU157487 lncRNA downstream 77235 35855228 ~ 35865035 (+) True LOC100653444
TU157524 lncRNA downstream 102356 35880349 ~ 35887245 (+) True G136805
XM_021560908.2 mRNA upstream 8251 35744227 ~ 35751886 (+) True LOC110488622
XM_036947175.1 mRNA upstream 10530 35744227 ~ 35749607 (+) False LOC110488622
XM_021560852.2 mRNA upstream 186977 35567202 ~ 35573160 (+) True LOC110488583
XM_021560843.2 mRNA upstream 205898 35548120 ~ 35554239 (+) False LOC110488573
LOC110534853 mRNA upstream 219689 35526086 ~ 35540448 (+) True LOC110534853
XR_002475033.2 mRNA downstream 5962 35783955 ~ 35785664 (+) True LOC110533750
XM_021560940.2 mRNA downstream 7904 35785897 ~ 35788114 (+) False LOC110488639
XM_021560951.2 mRNA downstream 11068 35789061 ~ 35791241 (+) True si:ch211-231m23.4
XM_021561001.2 mRNA downstream 50984 35828977 ~ 35845886 (+) False LOC110488684
XM_036947224.1 mRNA downstream 50984 35828977 ~ 35845886 (+) False LOC110488684
TU156686 other upstream 576141 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other upstream 576141 35180679 ~ 35183996 (+) True LOC110488391
TU156680 other upstream 606487 35151760 ~ 35153650 (+) True lypc
TU156467 other upstream 759582 34998396 ~ 35000555 (+) True LOC110488281
TU156464 other upstream 763341 34984972 ~ 34996796 (+) False LOC110488281
TU157479 other downstream 7698 35785691 ~ 35787470 (+) True LOC110488639
TU157485 other downstream 77156 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other downstream 77235 35855228 ~ 35856400 (+) False LOC100653444
TU157722 other downstream 204839 35982832 ~ 36037741 (+) True G136994
TU157787 other downstream 321618 36099611 ~ 36100277 (+) True G137058

Expression Profile