RNA id: XM_021560940.2


Basic Information

Item Value
RNA id XM_021560940.2
length 1751
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC110488639
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35785691 ~ 35788114 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctacaaatactcagccctgccacttccacaccgtcagatcgtaatctctgctcaTTCTGCCCACTCTGACtttggtccctgtctccagtcctaCTTCTCGTcagtcctgctactctgtccttgTCCCCCACTCTACGgttcccttggattcccctctggatctgcttaccctgtcccaacACGTCTCGCTCCAGCTCCGGCCTCCGCACCTGGTTTACTGCAACCTGCCTTAGCTCCCCCTGGCCTGCCCTCAATCTTACccctgtgttttaataaatacatTGGTCACCTCATCCCAGTCACCTGTTCACCTGGGTTCACCTGTTCCGCTTCGCGTGACACAacagggttctaactggaaccaaaaagggttctcctatggggacagctgaagaaccctttggaactctttttctaagagtgtagcaccTTAATTAACCCCCTAGTCAAAGGGACACCTTATGGTGACAGTTATGCAAAACTTCAATGATTTAGGCCCAGTGATGGCTGTTACACTTGGTTTATTACACCGTTGCTTATCTCATTATATACAAACCACCCATTCATTGACTGCTTACTTGTTCTGATAAAATGAGCTATAGAGAACATTTTTTCAAGTAAAAGTAGGAGCATGTAATTAGAAAGAGGTGGACAGTCCTCCCCAACCAAGCTGAGGAGAGAAGTGACTTTAATCTGCACAAATAACTTTCCATGAAGCCTGTGTAGCGGATAGCCTTGGACTTTCCACCATATCCTCTGTTTGATGAACTGTTGATAGCTTGAAAGCCATGGTGGTGAGGAGTGGGGTGATTCTGTCTGTCTACATCATCACCTTCCTGGTTGGCCTGCCTGGCAACATCCTGGCACTTTACGCCTTCAGCGTCAAGATCCACAACAAACCCACTCCCACAGACATCCTCCTGCTCAACCTGACTGTGTCCGACCTTATCTTCCTGCTCTTCCTGCCCCTCAAGATGCACGAGGCAGCCTCCGGCATGGTCTGGACTCTCCCCAGGCTTCTCTGCAACGTTACCTCTTTCGTCTTCTTCTCCACCATCTACACCAGCTCCCTCCTGCTGATGGTGGTCAGTGTTGACCGCTACCTGTGTGTGGCCTTCCCTGTCCAGTACAGGCTCCGCCGCAAGCCCTTGTACGGAGTGGTGAGCAGCCTGGTGGTGTGGGTCTTCAGCTCGGTCCACCTCTGCTTCATCTACATCGTGGAGAACCAGACCTCATCTGATTTATTTACCTGCTATAACAACTTCACCCAGGAGCAGCTGAAGGTGGTGCTTCCCATGCGCTTGGAGCTGTGTGTGGTTCTATACATCGTGCCACTGCTGGTCTGTGTGTTCTGCTACCTGAACTTCATCCTCATCCTCAATAGGACCCCTAACCTTTGTGCAGAGAAAAGGAAGAGAGCCGTCGGAATGGCTGTGGGGACCTTGCTTGTTTTTGTTGTCTGCTTCCTGCCCTATAATGTCACCCATGTACAGGGGTTCATCATCCAAGACAACGTGGAGTGGCGGCTCTACGCTCTGCTCCTGACCACGGTCAACACCGTCCTGGATCCTGTGACGTtctacttctcctcctccatgttccAGGCCACCATGAAGAGGATCCTAACTGGGAAGCGAAGGAACAGCACCCCTGGTGTCTTCATGACAGCTCAAAACAACACTAGAGACATAGAGGGACACTGTAACCCAGCCACAACTGAGGGAGGTTTGTCTGACAAGTGACAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157358 lncRNA upstream 56376 35729233 ~ 35729521 (+) True G136658
TU157357 lncRNA upstream 57585 35727239 ~ 35728312 (+) True G136657
TU157277 lncRNA upstream 81969 35638113 ~ 35703928 (+) True G136584
TU157282 lncRNA upstream 149398 35635157 ~ 35636499 (+) True G136589
TU157307 lncRNA upstream 153489 35631404 ~ 35632408 (+) True G136610
TU157508 lncRNA downstream 23620 35811734 ~ 35813460 (+) True G136789
TU157483 lncRNA downstream 67114 35855228 ~ 35856701 (+) False LOC100653444
TU157484 lncRNA downstream 67114 35855228 ~ 35864731 (+) False LOC100653444
TU157487 lncRNA downstream 67114 35855228 ~ 35865035 (+) True LOC100653444
TU157524 lncRNA downstream 92235 35880349 ~ 35887245 (+) True G136805
XR_002475033.2 mRNA upstream 233 35783955 ~ 35785664 (+) True LOC110533750
XM_021560918.2 mRNA upstream 7904 35760137 ~ 35777993 (+) False LOC110488629
XM_021560927.2 mRNA upstream 7904 35760137 ~ 35777993 (+) True LOC110488629
XM_021560908.2 mRNA upstream 34011 35744227 ~ 35751886 (+) True LOC110488622
XM_036947175.1 mRNA upstream 36290 35744227 ~ 35749607 (+) False LOC110488622
XM_021560951.2 mRNA downstream 947 35789061 ~ 35791241 (+) True si:ch211-231m23.4
XM_021561001.2 mRNA downstream 40863 35828977 ~ 35845886 (+) False LOC110488684
XM_036947224.1 mRNA downstream 40863 35828977 ~ 35845886 (+) False LOC110488684
XM_021561014.2 mRNA downstream 40865 35828979 ~ 35845886 (+) False LOC110488684
XM_036947216.1 mRNA downstream 40865 35828979 ~ 35845886 (+) False LOC110488684
TU156686 other upstream 601901 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other upstream 601901 35180679 ~ 35183996 (+) True LOC110488391
TU156680 other upstream 632247 35151760 ~ 35153650 (+) True lypc
TU156467 other upstream 785342 34998396 ~ 35000555 (+) True LOC110488281
TU156464 other upstream 789101 34984972 ~ 34996796 (+) False LOC110488281
TU157485 other downstream 67035 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other downstream 67114 35855228 ~ 35856400 (+) False LOC100653444
TU157722 other downstream 194718 35982832 ~ 36037741 (+) True G136994
TU157787 other downstream 311497 36099611 ~ 36100277 (+) True G137058
TU158178 other downstream 593778 36381892 ~ 36385856 (+) False LOC110488849

Expression Profile