RNA id: XM_036947207.1


Basic Information

Item Value
RNA id XM_036947207.1
length 2451
RNA type mRNA
GC content 0.51
exon number 12
gene id vsig10l
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35811748 ~ 35817949 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAATAAAGGATAGACGAGAGCTAGGCAGCCCAGCCGTGTTGCTTTGTGAACAACAACTCCGGTTGTTAAGGCGGGGAGATCTTTGGTTTCTCCCAGAGGACAAGCGCAATAGGTGTAAACTGTGATTTGACCATCTCTCCCCTGGGACCCTCACTGGTCAACACCACTGTTGGCAGCAATGTGACTCTGGTAGTGACCCTCAGTGGTGCACCTGACCCTGTGGTCACATGGAAGATGGGGAGTTTACCTGTGGTTACCTGGACCCTTGGCTCCAGTGTTGCACCAGACATAGCCATCATTCACCGCGATGTGCTGAAGATTGAGACCGATGGGTCCCTCGCCTTCCGAAATGTGTCTCATGTCTACAGTAACACCTACACTGTGGAGATAGTCAAGTCTGGATTCAAAACTGTCTCAGCCACATTTGTGCTGAAGGTCTATGACTACATCCGGAACGTGTCTGTGAACACAGAGCCTGCCGATGCCTTAGAGGGAGCCGAAAAGTTCACTTTGCAGTACAGCACACTGCAGGGTGAGGCCGACCAGTGGAGGTGGTACTTTAATAGTGTGGAGATACAGAACAACTCTCACTACACAGTGGGCCAGAAGAGCCTGGTCATCCATCAGCCCAACCGGAACGACACAGGACCTTACACCTTGGTCCTGACCAACCCTTTCAGCACTGTCACATTTCATAGGAAAATAACTGTTCTCTATGGACCAGACGAGCCCATGCTTGGAGCCAGTCCGTCCCAGGCCTTCTTTGTTTCTGGagataccctctctctctcctgtcaggcCGAGGGGGTTCCCCAACCCTCCGCCTCCTGGATGTTTGGGGGTCAGACCCTGCCCGTTTCCCAAGGAGGAAGTCTCAATCTGACTAATGTCCAAACTAGCCAGGGGGGCATATACACCTGTGTGCTGGTCAATGTGAACACTGGAGCGCAGCGCAAGAGGAACTTGACAGTCAACGTTTATGAGAGCCCGACAGCCAGCCCACTGTGCTCAGTCAATGCAGTGAACGGAAATGTCGACCTGCAGTTCCACTGCCGGTGGCCAGGAGGCACCCCAGAAGCCCTGCTGTCCTTTCCTGCCTTGACTAACGCCACCAGCGGTGCTGGAGACTTCAACCTGACCATGCCTGCCTCTCAGGACCTCAATGGGAAAATGGTCCTCTGTAGGGCCAATCACCCCCTCCGTCAGACATGGTGCAATATTACTGCCACTGGACCTGCAAAGTTTTTACCGATGGTCTTGACCACAGTGGACCGAGAGGGTAAAATAGTGGTCACCATCCACTGCAACAGCCAGGCCACGCCCAAGGCTATGGTCACATGGTCCAAAGGTACCGAGCTCTTAGCCAATGGCTTGCAGTACCAGATCAGCGTGGACACTGCGCAGCTCAACATCCATGATTTTAACACCAGCACCGCTCAGCTCTACACTTACACCTGTAACTGTAGCAACCCACTGGGCAGCAATGGAAAAAAGACTCAGCTACTGGgacccaccatctcagattccAGTCTTTTCCCTAATCGAAATGGAACCATCGTCACAATGACCTGGGAGGTCCCTCCCACCTCTGTGATTACAGGCTTTGACATTCAGATGAGCGGACCAGACCTCCTAACTGTCACTAAAAATGGCAGCCGAAGGAAAAGAGCCATAGAGGGATTCCGGAGCATTCAGCAGAGGCCCGGTTCCTCCCGGAGCACTGATATCTCTGTTCTGGATCCCAAATCCACATACTACTTCCGGGTCATCCCCATTGCTGGCCGAACTCAGGGGGAACCATCAGCGGTGCAGAGAATTGGACCCGGTGGTCTGAGCAGACCACAGATTATAGGCCTCGCTGTCGGGATCCCCTgtggcctcctcttcctcctcctcctcatcggCCTCATATACCTCTGTGTCTACTGCTGCAGGAAGAAACGTCAACAGAACAGATATCCTGTGCCCAGAGCAGTAGAGAAGgTGGTGTCAACCCAACCAGACGTAAACACTCCCAACCACCTGCTGACTGGAGGACTCAAACCACGGCCTGATTACAACAGAATGACATCGCAGGCGGCTCCGGCTGAGCGGTCAATCCCTCTCCCCACGTTTGTCGCTCCTCCCCCTGTGAGAACTGCCACAATTGTGTAAACGAATAAAACTTATTTTCACTGTGATGTGCAATATTTTATGTCTTGAATGTTttcatattttatattcttcataTTATTTTATCACTAATGTGAAAAGCTCTTGTGTATGTGAGGTTGATTTTAATATGGGGATATGTTGCTCTCTGTAACTGCAGAACTGACTATGGTGTTTCTTAATCAAAATTGTGTTTCTGCTTCAACCAAATTGTAAATACATGTATATCCGAACGCCAATGTCTGTGATCAGCAAACTTTGTACTGatgtttattttaaataaatatgaTAAAAATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157577 lncRNA downstream 37046 35771628 ~ 35774702 (-) True G136851
TU157576 lncRNA downstream 37415 35771255 ~ 35774333 (-) True G136850
TU157461 lncRNA downstream 55565 35755811 ~ 35756183 (-) True G136751
TU157459 lncRNA downstream 57260 35754274 ~ 35754488 (-) True G136749
TU157454 lncRNA downstream 59672 35751760 ~ 35752076 (-) True G136744
TU157574 lncRNA upstream 36323 35854272 ~ 35856704 (-) True G136849
TU157897 lncRNA upstream 274841 36092790 ~ 36094261 (-) False si:dkeyp-97a10.3
TU157900 lncRNA upstream 282628 36100577 ~ 36100780 (-) True G137165
TU157901 lncRNA upstream 284164 36102113 ~ 36102501 (-) True G137166
TU157898 lncRNA upstream 285040 36102989 ~ 36104369 (-) True si:dkeyp-97a10.3
XM_036947200.1 mRNA downstream 12214 35791262 ~ 35799534 (-) True LOC110488647
XM_036947201.1 mRNA downstream 12491 35791262 ~ 35799257 (-) False LOC110488647
XM_036933832.1 mRNA downstream 72876 35736331 ~ 35738872 (-) True LOC118936742
XM_021560895.2 mRNA downstream 85434 35702882 ~ 35726314 (-) True LOC110488613
XM_036947154.1 mRNA downstream 110902 35674291 ~ 35700846 (-) False drd2l
XM_021560989.2 mRNA upstream 1127 35819076 ~ 35823095 (-) False etfb
XM_021560982.2 mRNA upstream 1127 35819076 ~ 35823166 (-) True etfb
XM_021561043.2 mRNA upstream 256190 36074139 ~ 36080882 (-) True LOC110488718
XM_021561056.2 mRNA upstream 263770 36081719 ~ 36088254 (-) True LOC110488725
XM_036947272.1 mRNA upstream 274501 36092450 ~ 36104440 (-) False si:dkeyp-97a10.3
TU157404 other downstream 136043 35674431 ~ 35675705 (-) False drd2l
TU157405 other downstream 136121 35674298 ~ 35675627 (-) False drd2l
TU157060 other downstream 504019 35306367 ~ 35307729 (-) True G136399
TU156114 other downstream 1207270 34604215 ~ 34604478 (-) True G135575
TU155089 other downstream 1945811 33865488 ~ 33865937 (-) True G134668
TU158240 other upstream 552055 36370004 ~ 36370328 (-) True G137479
TU158620 other upstream 816244 36634193 ~ 36639005 (-) True G137839
TU158866 other upstream 1007917 36825866 ~ 36828397 (-) False G138080
TU158919 other upstream 1026984 36844933 ~ 36849345 (-) True pnrc2
TU159561 other upstream 1642925 37460874 ~ 37463758 (-) True LOC110501508

Expression Profile