RNA id: XM_036947226.1


Basic Information

Item Value
RNA id XM_036947226.1
length 4545
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC110488684
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35828977 ~ 35845886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTGTACTCCGAACACAGTTTCTAAACCATCTTTGTTGTAAATATCAGACATGAATATAGacagaaaaaaaaatctgaggtgTATTTGTAATGTTGTGTAATGATACAAAATGGTTGGCACGCAATGGATATAATGGAATTGAGAAGGTTGACATTCATTTTAAACAGGGGCACCTCAAATCAACATTGccgtgtagcctactgtacataaaACACATTTCTACATACTCCTCTTCCAAGATCAAAAGTTGAACAAAAATAGATGCAGGGCGGGGAATTAAATTTTGCTAACACCAACAGTCCACTCCATATTTTGTGAGACACGACGGACGCTGGTTTACTGCAGAGGTTGAGAGGATAAAAAAACCGAGAGTGAGAAAACATTTACCGAAATTACTCGACGAATCACTGTGCCATAACCTTGCAAAGAAACAATTCCAACCGTCCAAGTTGCTATCCTGACGACACTGACTCAATTTAGCAGTGCGAGTGAAACCGTGAGAACGAAAGCTTCGAGAGCGACATAAACCCCAGCCAGCGGCAGCGGTCTCCATTTTAACTTCGAGTCCGATCTATGCCTCACGTGTCTTGGACTGTCTCTCTCACATGACCCGAGTGTTTGTTCCCGTGATCAGCACTTCCATCTACGCGTCTGTGTCAGTGAATATCACATTTTATTCCAACCCTGATGGATATGCACCTCGAACAGAGTCTGGACACCGCGACAAGTCACGAAAAACAAGAAGAGGAGGTCGTCCAATTAGAAGGAGACGGGGAAGGGGAGcagactgctgttaccatagGCAGTATTCAGCAGGCCCAGGCATTCGCGGACCACAACATTCAGTACCAGTTCCGCTCTGAGGGTGGTCAGgTGACTTACCGCGTTGTCCAGGTAACTGACCAGCAGCTGGAGGGGAGAGATGACGGGGGAGGGCCGGTTAGCGTGGTCTCCACGGCCGCCTTCCCCGGCGCTCCTCAAGCAGTGGCCCAGGCTGTGATCCAGAACCCTTTCAGTAATGGGGGTAGCCCCGTGGGAGAGACGCTGGGAGGGGAGACGCGCTTTGCCTACTTCCCAGCTACGGCTGTGAGCGACGGCACTGTGTCTGTGCAGACCACCTCCGACCCCACTCAGGCCGGGGGTCAGTTCTACGTGATGATGAGCCCTCCTGACATCTTGCAGACAGGCACACAGCGAACCATAGCCCCGCGCACACACCCCTACCCTGAAGACGAAACCGAGATGCTGCAACATGACGGTTTAAACTGGAAAATGGATGGCCCACGGACAcccagagatgagaggaggagagctcaACACAATGAAGTTGAGAGGCGGCGGAGAGACAAGATCAACAATTGGATCGTCACGCTCTCCAAAATCATCCCCGACTGCAACATAGACAGCACCAAGACGGGGGCTagTAAAGGGGGCATCCTGTCTAAGGCGTGTGACTACATCCGAGAGCTCCGTCAGAATAACCAGAGGCTCCTGGACGGTGtcaaagaggtggagagagtacAGGTGGACAACGAGCTCTGCAGACAGCAGATCGAGGAGCTGAAGAATGAGAATGCCCTTCTCCGAGCTCAACTCCAGCAGCACGGCATCGAGAGCGTGGGCGAGACGCCGCCACAATGAACGAGGGAGACTGGGAGAGCAGGACGGGTAGAAGGAGGACGAGGCAGACTGGAGACGACACGTAGGAGCAGAACAAAACGAACGAGCTACTGACGAATCACTCTTTTTCACAGTCGCTGACAGTTAAGACAGTCTTCCCTGGCCTCGTCTTTGAGGCTGCATCCGAGACTCTTGGCAGGCTCCTGCTGCTTTGTTGGCTGCACTTGACTGATCCAGGATCAGTCGAAATGACAAAAGACGCCACCGTGTAGACCATAGACATGTCTCCGAGAGAGAAGAGGTCACAACCACCAGAGGAAAAACCCTCTACTAGCCCAGAGAAACCCACTGCAcaactcctccctccctttctataTTTATTTAGTTCCTCACCTGTGGACTGTGACATTGGATATTTTGTTGTTGAGttgttttttttcccattctCTTCAGTCATGTTTTATTTTAGTCTGTATTTGTGGTTGAGGGTCATATTacaattttgttacgttagcaGTTTTTAATTTATTAGTTTGTGTATTGTTAAAAATCTGCCCAGAAAGACTCATTTAGAAAAGCTCATGTATCCTAGAGGAATAGATGATGTATGAGTGAGTGGTAGGCTACCAGCCAGTAGAACAGAAACACGATACAAATAAACCGCTGCATTGCAGATCTATGTGAAAGAATGGCTTGATAGTTGCCAATATTAttagaagtattgggacagtgacacatttttagttttggctctgtactccagcactttgaaaTGATATAATggctatgaggttaaagtgcacaCTGTCAGCTTTAGTTTtggggtattttcatccatatcgggtgaaccgtttagaaattatagcactttttgtacattgtCCCCACCATTTTAGGGGAACAGAAGTATTTGGATGAATTCACTTGTgtaataaagtagtcaaaagttgagtatttggtcccatattcctagcatgcaatgattgcataaagcttgtgactctacaaacttgttggatgcatatGCCATTAGTTTTgattctattgggcacaaaataatctgaaactaTGGTAAATAATGCATTGTCATTTTGGAGCCCCTTTCATTGTACATTTATTGTACATTCTAAACACTTGTacatggatgctaccatgattgcggataatcctgaatgaatcgtgaataatgatgagtgaaagTATCATAACTCCAAGActtgctaacctctcaccataacGAGAACGGGAGGTTAGCATATTTTGGGGGGAGGTATGATGTTtatgcctctaactttctcactcgtcATTGTTCTCGATTCATTCAGGGCTGTCCGTAATCATCAAACACAagcaaacaaacagcaaatgcatctaagaagtttgtagtcacaagcttgacgtaatcattgcgtgctaggaatgtgggaccaaatactaaaccttTGAGTACTTTACAgcactttttatatatatatatatatatatatatatatatatatacattttttttattattattatatatttttttacatagttCCCCCCTGatttttaggggaccaaaagtattgtgaCGAATTCATTTGTGTATTAATTACTAAACGGCACCGATATTGATGAAAatgccctcaaattaaagctgacagtctgcactttaacctcagtcattgcatcatttaaaatccaaagtgctggagtacagagacaaaacaacTATCTCAAGGATGCAATTTTGGTATACCCAGAGGAATAGCTGTGCTTTGCCCAATATCACAGTTTTACAGTGCTTGCATTAACAGAGTTGTTGTTAAAATAGCAACAATGCAACGTTCTATAAATGTGTCATGTTGAAGTATGGCCACTGGCGTTAGTGGGAAAATAAATGGTAATCAATAATTCATTTACTGTGTACGCTGGCCCTTTTCTACAATTATGCAATTTAATACACAATCTTTAAGGCTGGTTTGAGACTGGCCGGGTTCGCTTATAGAGCATTTGATAGACCACTGATACGGCCTCTGAGAGAAAGGTGGAGCTCTTAAAATGTCACCTGACATATGAAGTGAGTGCAAATGTATATGATTCTGGGTGGAACATCACAGGTTGCatcagaaatggcaccctattatgtagtgcactacttttgaccaacaGTGATTTATGtaagggatagggtgccatttcagacaccaCCCAAGTTTTTAATTTCAACATTGTGTCACGTTTAAAACTCACTCTTGAGAAAGCGCATTGAGTTCACTGCTGAGCTAAATTTAGCGGCTACAGAAGTCTGGATGTTTTTTGCGAATGTGTGTGTGATGCATCTGTCTTGATATGTGTAAGAATAACCACAAGTATCATGTCTAGCGTTTGGCTTTTTATTTTTCTAACCAACACATCAAATGGAGATTAATGCACCCAGGGAGAAAGACTCTGGAGAGAATAAATGAACCAACTCACTGCTCAAGATAGAAGCCAAGAACAGAGAAACTTCCTGTTCTTGCGCCTCGTTTCTGTGTTCTGACTTGCCTCTCCTTGCAAACGAATGGATGCTAATAAAGACTTGGGAAAACATTTTCATCTCAGACACTCTTTCACTCATCTAGGACAAGAACCAAGTTGAAATGCGTTCAACGTGCAAACAGGCAAGTTGATGATGATACCAATGTTACTGATGACTGGATTTGCATTGTGTATTTTGTCCTGAATTTGGGAAAATGGGAATAGGTCAATTTGTGTTTTAGTCTCTGATCAGGGTGTTTTAGGCATGTACTGTCTGGCTCGGGAATCAGCAAAGCAGCACTAATACTCAACCCAATGAAAAGTCATGTATACTCAATGATTCCACCTCGACAAGCTCTCCTACTCTGTGACCTTGTGCTTTTGTAAGTGCAGAATAAAATTGTTATCCTGTTTTGCTCAA

Function

GO: NA

KEGG:

id description
K09106 USF; upstream stimulatory factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157508 lncRNA upstream 15521 35811734 ~ 35813460 (+) True G136789
TU157358 lncRNA upstream 99460 35729233 ~ 35729521 (+) True G136658
TU157357 lncRNA upstream 100669 35727239 ~ 35728312 (+) True G136657
TU157277 lncRNA upstream 125053 35638113 ~ 35703928 (+) True G136584
TU157282 lncRNA upstream 192482 35635157 ~ 35636499 (+) True G136589
TU157483 lncRNA downstream 9342 35855228 ~ 35856701 (+) False LOC100653444
TU157484 lncRNA downstream 9342 35855228 ~ 35864731 (+) False LOC100653444
TU157487 lncRNA downstream 9342 35855228 ~ 35865035 (+) True LOC100653444
TU157524 lncRNA downstream 34463 35880349 ~ 35887245 (+) True G136805
TU157563 lncRNA downstream 78869 35924755 ~ 35924957 (+) True G136842
XM_021560951.2 mRNA upstream 37740 35789061 ~ 35791241 (+) True si:ch211-231m23.4
XM_021560940.2 mRNA upstream 40867 35785897 ~ 35788114 (+) False LOC110488639
XR_002475033.2 mRNA upstream 43317 35783955 ~ 35785664 (+) True LOC110533750
XM_021560918.2 mRNA upstream 50988 35760137 ~ 35777993 (+) False LOC110488629
XM_021561032.2 mRNA downstream 9317 35855203 ~ 35856420 (+) False LOC100653444
XM_036947245.1 mRNA downstream 9317 35855203 ~ 35865269 (+) False LOC100653444
XM_036947247.1 mRNA downstream 83014 35928900 ~ 36069412 (+) True iglon5
XM_021561090.2 mRNA downstream 263403 36109289 ~ 36113122 (+) True LOC110488747
XR_005034524.1 mRNA downstream 272180 36118066 ~ 36122250 (+) False LOC110533753
TU157479 other upstream 41511 35785691 ~ 35787470 (+) True LOC110488639
TU156686 other upstream 644985 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other upstream 644985 35180679 ~ 35183996 (+) True LOC110488391
TU156680 other upstream 675331 35151760 ~ 35153650 (+) True lypc
TU156467 other upstream 828426 34998396 ~ 35000555 (+) True LOC110488281
TU157485 other downstream 9263 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other downstream 9342 35855228 ~ 35856400 (+) False LOC100653444
TU157722 other downstream 136946 35982832 ~ 36037741 (+) True G136994
TU157787 other downstream 253725 36099611 ~ 36100277 (+) True G137058
TU158178 other downstream 536006 36381892 ~ 36385856 (+) False LOC110488849

Expression Profile