RNA id: TU157483


Basic Information

Item Value
RNA id TU157483
length 1134
lncRNA type sense_over
GC content 0.46
exon number 3
gene id LOC100653444
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35855149 ~ 35865269 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAAGTCCCTCATCCGCTGACATCAAAAGGACAATCAATCAACTTTGGACTCGTCTAGTGCATTGAAAATTGTGCATTGGAGAGCGCCGCTATTTGGGAAAATTGAAGAGCTCTGATCTTCATCATAAACTGTCACTTCAATTCCAACTGTTTTCAACAGGACTTTTAAATAGGCTATAAGCTTCCTAACAAAACCGAGAATGAAGGCCTTCAGTGTTGCAGTTGCAGTGGTGGTCGTCCTCGCATGTATGTGCATCCTTGAAAGCACCGCTGTTCCTTTCTCCGAGGTGCGAGCGGAGGAGGTTGGAAGCATTGACAGTCCAGTTGGGGAACATCAACAGCCTGGCAGCGAGTCCATGCATCTGCCGGAGCATTTCAGGTTCAAGCGTCAGAGCCACCTCTCCCTGTGCCGTTGGTGCTGCAACTGCTGTCACAACAAGGGCTGTGGCTTCTGCTGCAAATTCTGAGGACCTGCCTGCACTAAAACCATCTTATTAACTTATTGCCTTTAATTTCCCCCCTATTCTTCTACATTTCTTTTGGACTCTGTGGAGAAGATGCTATCTCATTGATGTCTTTCTCACTGCACAACCTCAGTCTTGTACATAAATGTTTTGTATCATGTCGTatatgtattgtataatgacGCAGGAAAAAGACATAGCCAATTGAAATAAGTGGGgatttttattttctattgtgtAAATTGTTTTGTACATTTTCTagtttgtacatgtttgcaatatTTTCTTTCTAAGATGTTGTTTTTGTAGCTATGATAATGATTTGTTAAACGATTTCTTACAGTGAcacttttttaaatataaataaacaCATTCTTTGAATAACAAACATGGTTGTTTCTGAATTATGAATCTGCTATAGATGTGTACCCTGTGGCTAAATGTTCAGGCCTGACAGCCAGAGGCTTATTCAAATTAGTCGCGTCTGGGAATGGAAtccacagtgccttcagaaagtattcacacctcttgacattttccacatttgttgtgttacagcttgaatttaaaattgattaagttgagattttgtgtcactggcctacataatgtcgaagtggaattatgtttttagaaatgtttacaaatgaataaaaaaacaaaaagctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157508 lncRNA upstream 41768 35811734 ~ 35813460 (+) True G136789
TU157358 lncRNA upstream 125707 35729233 ~ 35729521 (+) True G136658
TU157357 lncRNA upstream 126916 35727239 ~ 35728312 (+) True G136657
TU157277 lncRNA upstream 151300 35638113 ~ 35703928 (+) True G136584
TU157282 lncRNA upstream 218729 35635157 ~ 35636499 (+) True G136589
TU157524 lncRNA downstream 23648 35880349 ~ 35887245 (+) True G136805
TU157563 lncRNA downstream 68054 35924755 ~ 35924957 (+) True G136842
TU157782 lncRNA downstream 233355 36090056 ~ 36090288 (+) True G137053
TU157783 lncRNA downstream 234692 36091393 ~ 36091725 (+) True G137054
TU157784 lncRNA downstream 235527 36092228 ~ 36092555 (+) True G137055
XM_021561001.2 mRNA upstream 9342 35828977 ~ 35845886 (+) False LOC110488684
XM_036947224.1 mRNA upstream 9342 35828977 ~ 35845886 (+) False LOC110488684
XM_021561014.2 mRNA upstream 9342 35828979 ~ 35845886 (+) False LOC110488684
XM_036947216.1 mRNA upstream 9342 35828979 ~ 35845886 (+) False LOC110488684
XM_036947229.1 mRNA upstream 9342 35828979 ~ 35845886 (+) False LOC110488684
XM_036947247.1 mRNA downstream 72199 35928900 ~ 36069412 (+) True iglon5
XM_021561090.2 mRNA downstream 252588 36109289 ~ 36113122 (+) True LOC110488747
XR_005034524.1 mRNA downstream 261365 36118066 ~ 36122250 (+) False LOC110533753
XM_021561206.2 mRNA downstream 360319 36217020 ~ 36227769 (+) False LOC110488805
XM_021561216.2 mRNA downstream 360383 36217084 ~ 36227769 (+) False LOC110488805
TU157479 other upstream 67758 35785691 ~ 35787470 (+) True LOC110488639
TU156686 other upstream 671232 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other upstream 671232 35180679 ~ 35183996 (+) True LOC110488391
TU156680 other upstream 701578 35151760 ~ 35153650 (+) True lypc
TU156467 other upstream 854673 34998396 ~ 35000555 (+) True LOC110488281
TU157722 other downstream 126131 35982832 ~ 36037741 (+) True G136994
TU157787 other downstream 242910 36099611 ~ 36100277 (+) True G137058
TU158178 other downstream 525191 36381892 ~ 36385856 (+) False LOC110488849
TU158176 other downstream 538585 36395286 ~ 36401971 (+) True LOC110488849
TU159857 other downstream 1920360 37777061 ~ 37824010 (+) False G139004

Expression Profile