RNA id: XM_021561056.2


Basic Information

Item Value
RNA id XM_021561056.2
length 3332
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110488725
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36081719 ~ 36088254 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCATTAAAAGCACCGTTTATTTGAAGCCAAGCGTTTACTCACCGTTTGACCAGgggacgtttgtgtgtgtgtgtttgctgactAAGGATGATGTCTGAGAAGGAAGTCATGGAAAGATACGGCCACAGCAGCCTGGTGCTTGTGGTCTACATCATCACCTTGCTGATTGGCTTCCCTGCCAATGTTGTGGCCTTTTACACCTTCAGCAAGAAGGTGAGGCAGAAAGCCATGCCTGTCGACATCCTGCTCCTCAACCTGACCATCTCGGACCTCATCTTCCTGCTCTTCTTGCCCTTCAAGATCAAAGAGGTGGCGGACAACATGAAATGGATCATGCCCCACTTTCTGTGTCCATTGACCAGCTTCGTcttctacaccaccatctacaacAGCACCTTCTTTCTGACCGCAATCAGTGTCGAACGCTACCTGGGAGTGGCCTTTCCCATCAAGTACAAACTAAAAAGACGGCCTTTGTACGCCATGGTGGCTAGCGTCTTCTTCTGGGCAATCTCCATGGCGCACATTAGTATTGTCTACATCATTCAATATTTCGACTATTCCAACACCACCCGGGCAGACCCTTTGAACCTGGACATGTGTTATGAGGATTTCACCCCGGAGCAGCTGCAAGTCTTGATACCTGTCCGTCTGGAGCTCTTCCTGGTTCTATTCTGTGTACCTTTCTTTATCTGCTGCTTCTGCTACATCAACTTCATCCGAATCCTCTCTCAGCTGCCCAGCATCAACCGCAAGAAGCGTCAGCGGGCCATCGGCCTGTCTCTGGGGACCCTGCTGGTGTTTATCGTCTGCTTCGCACCCTACAACTTGTCACACGTAGTGGGCTTTGTCAACTGGGAGAGTCCCACTTGGCGGGTGGAAGCACTCTTGTCCAGTACCGTCAACGCCAGCCTGGACCCCATCATCTTCTACTTCTCCTCAGCGGCCCTCAGGTCTACCTTCCACCTCTTCATGAAGAACCTGGTGGAGAGGATGCAGCGGTTGTTCTTCTGCAATAAGGTCCTGTTCTGCTCCAGAACTCAGAAGGACAGCACACCAAGCACCAATGACAGCTCCTTATAGTGTACGTGTCAAACTCATACCACAGAGGACTGAATGTCTGCgggtttttgctcctcccttgtacttgatggatgaattaaggtcactaattagtaaataGCTCCCCTCACCtgattgtctaggtcttaattaaaaataaaaaaataaaacctgCGGACACTAGCTCCTCCATGGAATGTGTTTGACACCCCTATTATAGTGTGTAGTCAAGCCATATGCTACACATGCTAAATGCTAGCCTGTTCAATGTATTTATTGCACTTAGGTTCTTATTGAAAAGACAGGACTTTGCTACCTGTCTTTATAAGTAGCCTATACATTAATCAGTGCCAGTCGGTGCCAATTAGGATGAGGGAGGATGCTACTTTGTTTTTTATGAGCatagccttatttctattacagaatATTGGATGACTGTAATTCATTTTCCATTCCCCCAGcccaatgtaacatcgatagttTTGGGCTACTGTATGATAGTCAAATTTgacctatacccatcatgagtttGCAACaaactagcctatgaatgaaaatCTACAACGTAGGTGCAAAGGGTTGAGAGAATTTTGAGTAACCAAGGTGATTACTGCCTTGCGCACTCTTGCTTGCATCTAGCTGACcaagggtgtaatcattagtccaacatttgcaaatgagagtttctattggacaaagtcaggtatgtttatcccatttttgttccatttgcttctgtttaagaaacatttttcaacagaatcggcggaatgaatacacccctgatcatacGAAAACAGTTCACTTTCAAAGCAGCCTTATGTAGACAGCATGATCACGTTGCTCGTTGTTCATATAATTCCTTGTTTATATAATTCCTATAGTTCCTGTTTATATAATTCCCAACTATCCATGCGctttcctcctctcaccttttacctttgcttgtggacttcagtgcataACACCTGTCTGTGACCAGGAAAAAAacactttccaagccaaaccttcatatcatgactACTAACCGCTACATACAGACTGCATCATTGTCACTTCATAGTCAAAATAGCTATAGTACTAGAACTAACGAGTTAGTAAACCCggtacaatcatgcagtacagtgtacagtcacaAAGCAGTTTAACAGTTCCACTGCGGGTGCTGGTGGTAATAAATtattaaaaccaaaagcttacctagatttggaagagttccagtgttggatagccatagccagctagctaacatagcatcactctctgtttgagccaggtgtttgagtatgCTAATCCAGCTAGCTTAAGTGAAAGTgaagttaaaaaaatataaacaaatatagctagctagttctctcttgcttctctttAATATTtgaataaatacatattttcaaaactgttaaactattctctctttgagtcaactattcaccacatgttatgcactgctgtgctagctagctgtatcttATGCTCTTagtactagattcattatctgatctcttgattgggtggacaacatgtcagttcatgctgcaagagctctgataggttggaggatgtcctccggaagttgtcctaattactgtgtaagtccaTGGACAGGGTGAGAACCAAGAGACTCCTAGGTTTTGCATTGACGTCaaggaagctagctgtcctccagcgtACACCATGGTGcactacagagtgctgctgaggctactgtagaacttcattgtgtgttttaatgaattaTTTGGTAACTTGAATATATTCAGTAAAGTTTTATCTAAACATGCAAACTTTTTAAATGTTCCACTATTATCATTGTATGAAATTTACTGAGGAgcatggtcctccccttcctcatctGAGGAGCCTTCACTGACAGTAATGTATGTGTAGTATGCATTTGTATGTGTATTTATAAGCTGTTGAAGGTTTTATATTATTTCTGTTCCCCTTTATTTTATGACTTTTTTTACTGATGACATTAAAAATCTCTTTTTACATCATACTTCTGAGAATATTTGAAGTGATGCCTTGCCCCCCATGAAAATGTTTCACAAAATGGGATACACAAACTTGCATAATACACTCTGATTGTCTGTGTCGGCTGTAGCTCTTGGGTTTTATAGATATGTGATTTCGTAATACTTTGAAGGGTTCTTCCAGTCATCAAAACAATGTAAAACAGGAAGTTGAGTTTCAGGCATATTTACAGTGGGCTCCAAAAgtgtgtaactttctcactcatccttattcatgattcattcaggacta

Function

GO: NA

KEGG:

id description
K04328 FFAR2, GPR43; free fatty acid receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157571 lncRNA downstream 216965 35791903 ~ 35864754 (-) False G136849
TU157574 lncRNA downstream 225015 35854272 ~ 35856704 (-) True G136849
TU157577 lncRNA downstream 307017 35771628 ~ 35774702 (-) True G136851
TU157576 lncRNA downstream 307386 35771255 ~ 35774333 (-) True G136850
TU157461 lncRNA downstream 325536 35755811 ~ 35756183 (-) True G136751
TU157897 lncRNA upstream 4536 36092790 ~ 36094261 (-) False si:dkeyp-97a10.3
TU157900 lncRNA upstream 12323 36100577 ~ 36100780 (-) True G137165
TU157901 lncRNA upstream 13859 36102113 ~ 36102501 (-) True G137166
TU157898 lncRNA upstream 14735 36102989 ~ 36104369 (-) True si:dkeyp-97a10.3
TU157903 lncRNA upstream 18061 36106315 ~ 36106534 (-) True G137168
XM_021561043.2 mRNA downstream 837 36074139 ~ 36080882 (-) True LOC110488718
XM_021560982.2 mRNA downstream 258553 35819076 ~ 35823166 (-) True etfb
XM_021560989.2 mRNA downstream 258624 35819076 ~ 35823095 (-) False etfb
XM_036947207.1 mRNA downstream 263770 35811748 ~ 35817949 (-) True vsig10l
XM_036947203.1 mRNA downstream 263895 35811748 ~ 35817824 (-) False vsig10l
XM_036947272.1 mRNA upstream 4196 36092450 ~ 36104440 (-) False si:dkeyp-97a10.3
XM_036947283.1 mRNA upstream 4196 36092450 ~ 36104441 (-) False si:dkeyp-97a10.3
XM_021619837.2 mRNA upstream 35028 36123282 ~ 36133319 (-) False LOC110534917
XM_021561185.2 mRNA upstream 55633 36143887 ~ 36188948 (-) False LOC110488787
XM_036947333.1 mRNA upstream 55633 36143887 ~ 36188948 (-) False LOC110488787
TU157404 other downstream 406014 35674431 ~ 35675705 (-) False drd2l
TU157405 other downstream 406092 35674298 ~ 35675627 (-) False drd2l
TU157060 other downstream 773990 35306367 ~ 35307729 (-) True G136399
TU156114 other downstream 1477241 34604215 ~ 34604478 (-) True G135575
TU155089 other downstream 2215782 33865488 ~ 33865937 (-) True G134668
TU158240 other upstream 281750 36370004 ~ 36370328 (-) True G137479
TU158620 other upstream 545939 36634193 ~ 36639005 (-) True G137839
TU158866 other upstream 737612 36825866 ~ 36828397 (-) False G138080
TU158919 other upstream 756679 36844933 ~ 36849345 (-) True pnrc2
TU159561 other upstream 1372620 37460874 ~ 37463758 (-) True LOC110501508

Expression Profile