RNA id: XM_036947283.1


Basic Information

Item Value
RNA id XM_036947283.1
length 5897
RNA type mRNA
GC content 0.50
exon number 13
gene id si:dkeyp-97a10.3
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36092450 ~ 36104441 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATTGCTCAACGTTTTCCGTCGCAAGAGGTTTTACTAAGGTgtcgactaatgaatacacctgtgGAGACAGGTGAGAGTGGAGAAACAGGAAATGAAACCTTTCACACATAAACAAACTGGTTTTGCCAAAAATCTGCTAATGGCTTTTACAACTGAAacatgagagaagagagaaaagtcTGTCTTGTGATTTGCGTCTGAGTCAAAAATACTCCACAGGCTATCCTGACTGATGTGATGAACCTACACCTGCTTCCTGTAGTTCTGTCATTGGCAGtcTTCCTCTCCGTCGCTCTCTCCCAGGACCTGGTCTCAATCCAGTTTAAATCAGATCCAGTCCTGGTGCAGACTGGCACCGATGCGGTCTTCACGGTGGTCACAGTGTCCCAGGTGTTTTCCATCACATGGGGGTACCCAGGTGGGGTGACGCCCCTGGGGCTGTGGGTGGGGGGCAGTGCGGTGCTCAACACTGTGACCCAGTACCAGGGCAGGGTCACCATCACAGCCACCCAGCTCCGTATCAGCAGTGCCCAGCTCGGAGACGCGGGGAACTACACAGTGATGGTGGACCCCTTGCCCACCACGGGCCTGGCCCAAAACACCAGGTCCATACAGCTCAGGGTGTTCGATGCAGTGGATGGCGTGACTATGTTTGTGCCGTCAGTGGCTCTGGAGGGGGGCAATGTGTCTGTGCGCTGTACCTGGACCAAGGGGACAGAGACCAGTGTGCTGTGGGGTAAAGGGGGCTCTGCTCTCACCTCAAACTCCAGGGTCACTATCAAAGGGGGCGACTTGGTGATCAACCCGGCCAGGAGGGAAGATGCCGGGCTCTACTCCTGCACCGTCTCTAACCTCGTCAGCGCTCAGTCCGCCTCAAAGACCCTCACAGTTTATTATGGTCCCGACACCCCCGTGCTGAGCAAGGCTTCTCCGGCAGACTGTGTGGTACGAGCGGATGCAGTGGTAGGCCAGACGATCCGACTCACCTGCGTGTCTGACTCCCTGCCCCCCGCCACTTTCTCCTGGAAATACAACAATGAACCCGTGGCGTCTGGCCAACTGGACAGTGGCGTGTTCAGCCTCCAGACCTTCTCCACCAACCAGAGCGGCCAATACAAGTGCGTGGCTAGCAATGCCATCACGGGCGCAACGTCGGCGCAGGGGACGGACCTGGCCATCGTGGgcacaTGCCTCAGTGCAGGGGCAGTCGCAGGCATAGTGATTGGCTGTGGGGTCGCTCTGATCTTAATCGTCATAGCCATCGTACTCCTGGTGCGCTGGAagagagTTGACCGAAGACTGAAGGAGGCCACAGGACAAAAGAGACACCCAGAACTCATGCTTACACCCACTGAACCCCCTCCACATGGTACCCGGACTTTAGGCAGAGGCCATCACTCGGACCCACCGCTACACACAAACCCTCACAACTTCTACACTGTCCCACCCGATGGccacgataacacacacacaccgccacgCAACATTAGCACACTCCAACACAATGGCCACGCCAACAGAAATAGGTTCCCACACAATGCGCAACATCCGAATGCCAATTCATTTCCACAGAATGGCACCGCGCAGGACCacgacactttcacacacactgctgcaccTCAGAATGCCAACACACTCGACACCTTCCCACAGATGACTCAAAACCACCCAAACAATCCAAACATACTCATACAAGCGGGTTCTACTCAGGTCGGTGTTAACCTAAACACACTGGCACACAACCAGCAAAATAGCAACGCACAGGTGGCCACGGTTCACGTCAATCTCAATTCCTATCCAACTAATGGTCAACAACCCAACCAACAGTCACAGCAACAATTTACAAGCCCACAGGACAGTACAATGCAGAGGAGCGCCACCAATGTAGCCAACAGTGCTAGTGCTCTTCAAGTTCAAAATATCAACCCACAAACGTTCACACAGACTGGACAGTCATACTCCAATCCCAGGATGCAAATTGGCTTGTCATATCCTGGTGATCCTTCACAGGTTGACCACAGTAACTTAGACACTGGTCCTCAAGTTTCTACTGGTCCTATTCCTACTGGTTACACACACAGGGGTCGAAGTCACACTCTCCAGCGAAACGCCAACACGCAGACCTACCAGATGGACCAGGCTACTGATACCCAGCCTAGACACTCCAACCCAGCAGCGGCCAGCTCTGTGCCACGTGATGCCAGCCATACCACACCAAGTGCCAGCTCACACCGCCAACAAATGCCTTGGGACCGTCTGAGGGGCACCCCGGCGTACCCCAACGAGCCCCCCAGAGGGGTACAGGCTTCCCCCGACAGCAGATCCACCTCTGATGGCACCTCTGAGTCCCCGTCCCAGGCTAGACTATCCAGACCACACACCAGGAAGAGTGGGCCAGGAGCACAGACCCAGAGTCCCCCACAGAGCCGATCTACACCCAGGAAGGCTGCACCGACGGCGGCCAGACAGACCCAGAACCTCCCCCACACTCATGGGACGAACACTGAGCCTGGGGCTCCAAGCCACACACAGTTGCATATCAGTCCCCATGCACACGGTACACAAAGGCAGAGAGCCCGGCAGGATGTCAGAGTTCAATCCCAGATCACAGCTCAGACCGCTTCTCAAAGCCAGACTGGCCCCAGGCAACAAAATGCCTCCCGCAGCTACCACAACCCCCAGACACAACAACAGGGACCAGGCGCTCCACAGGGACTAATAACCACCATGCCCCAAGGCACCACACTCGACATTCGAGCTCTCGCCAATCCAAATCACATCCCACAGACACAAACCGGGATTCAGTATGGTAGGGGAAACACACACATGATACCGCAGCCCACACAAGACCAGAGACGGACAGCAACACAAGGTTGGGGTGCACTaacacagcctgttacacagAACCCCAGTAGCCTCACTCAGACGGCCCTGGAGATGCACACACTGACGACCCCGAACCCTTTTCACAACCGTAACCACCAGACACAGGCCGCCCTGCTCAACACCCAAGCTCGAGGCCCTAACCCTGGGCACCAGCGCCCCCCCACGCCCCCTCCCGTGATCCCTCTGGCTCAGTTCCAGACTATTCCCAGAGAACGCACCCAGCACCAGTCCCCAAACCGGGGCCCCACTGGCCCTCTCAGGCCCTCGGTCAACGTACACAATGCACAGAGACACCCCAATGCTCACCCGCCCCGCAGACACCCCGGTGCTAGCATGCCGGCCAACCTGCACTCGGGAAATGCCCACCACGTGCACGCTgataacacacacaggcacggtCAACATACTCATCATGCCCACAGGAACACTGCCCACCCACGCCAGACCCACCAAGGGAGGCCTAGACACTGAGAGATGCCAACGGACACACACACCAGCAACTGACAAGAGGAGAAACACAAGCATGGATGACTATGGGAGCCCCACTCTAAAGCAATGGAGACCAAGCAAAAACACACATATGCgcgtgtacatacacacacacacacacacttcccgcAGTCGACTCCCCCTGCCTGTCAAGTGAATGTTATCTGTTGATTTTCAACAGTACCGACAATGACTCactggaaaacacacacagaggtgtcTTTTCTGAAGCACCATATAACCAAATAGTAGTAATGAGAAAAAGGCCTGTTTGAGGCGAGACACTCCAGGCCGTGTGTACGTGGCCTCTCCCATTCAGCGTGTTCAGAGCGAGAATGAGGCACGACCACAACAATGAGGACTTGAAATGTTTCcattcatgtctgtgtgtgtgttgctccttGTGACTAGAATAAACAGTAAAAAGGACAGAAAAAGAGACCCCTTGCTGGACTGATTCCAATTGAATGGACTTGACCCCTGGGAACTACTGTGTGAAAATTCAGGAGGAAAAAAGCCCCTCTGCGACTTGCTTTATTGAATATTTCCATGGAAGTATTTACGTGGCGACTTTCTGTTTACAGATGCTTCTCTTGACACCGCTCAATTAACGGGATTCGCCTCGGCGCCTGGGCTTCAGAAGCAATGCTCAACTAACTATGAAGGAGACCCCACAAATGGATGGGCCGCTCATTAATTAAGTGCTTTTATGTGACTTAAATGACTCGGAAAATAATAACGCCCATGCGTGGAGGAGGTCAGCACAAAGAGGCTGCTGAGCTGCTTTTCCCCGACTAAGCAAAGCAAAACAATTTGCTCTGGGACTACGATGCTCTTTTGTGTGGGGGATTAGCACATTAAAAGGGATCTCTATTGGAAAGAATCTTAGTTTTCTTTCGaacaaaatgtatatttaatttttttatttttctgttaCGTGCTAAATATGTTGGACTGCTATTGCAACATGTGTCTTTGTGACTCAGGGAGTCTGTTTTATACTAAAATATATGTTCCATTAAAATACAGAAAAGAGGataaatatgttttttaaagATTAGGGGTCTCCATTGAACATAGTTTTTTTCCCAGGACTAGGCCGCCCCCATATGTTTTGTTGATGATAATAAAGTATTTTGATTTACAGGAAAATACTGTATGTCAGTATATTACATGACATTCATTTTGATATAATGTTACCTACCTAATGGTATAATCTTAACTGCTTTTGAAATAATCTTGCCCTCCAGGCATTCTGATCTTCAGCTGTTACAAATATTCCCAGAATATTGTATTTACTTAACAGTTTTTCAGTTGAAGAATCTGCACTGTAAAAATGTCCTTTCTTAATTACAGCACAATTATTTGCAGAGTTGCCAGATTAATACTGTAATTTAGCTTTACAGCAGAGATGTTCCTTCCTGTAAAACATGTTACAATATTCCTGCTGTAAATGTGGGCACCTGATTCCATGGCAGAATTTAGTGGATGTGTCATGGTTGATTGATAGAGTGAATATGCCCACTGAATCTCAAGCCATATCTTAAAGCAATAACAATAAGGAAGATATGTTGACCTCTGCATTCAGGACTAAGAGTAGGAGAAAGTCCTTTCGAGAAATGAGTAGCTGCGTTGAACTTTTGAATCCTGTTTTGTATGTGCTGACACTTGCTTGTTATGGAGGAATTAGGAGTTTCTGGCTTGCTGTTCTATCAGTCCCTCAGCACAGCTCCCACTTTGGCTCCACCAAGCCCTCCTGACCCAGACGAGCCAGTTCTGCTCATCGTGTGTGTAACCCTTGCTGTGGTTTTGGTGGTGGTTTTTCTGGGGATCTACTATGGCTTCCAACGCCACAGTGCTAAGAAAAACATAACTGACGTCACCAGGAGACATGGGTCCATGATGATGAGTCCCGAAGGACTGGCTGGAGCATAGGCGTGTTTGTCTGCACAGGATGTGCATCTGCATGCAAATGTATTGGCTGAAGCCCAGTAGCAACATattccaaatggcaacctattccctatttagtgaaactattttgaccagagccctatgagtcctggtcaaaatgagtgtactataaagggaatagggtgccatttctaaCACAACCATAATTTCAACAGAGTCTGGAGTTAAGTATAACATCAGTCTGTCTGCAATAAACATTTTGAGCAACAAAATCAGACAGGAGTTTTTATATATTGTAACTCCACTAGGGGGAGCCAAGCATGCAAGAGAGACTTCAGGGGCCTCATCGATGAGAGCAAATgtacttatttaaaaaaaaaaatttttgccTCCAAGGTCTTTTCTATTAGATAGGATTTTACGACACTGCTTGTTCAATATCACAAAATTAAAACAATAGACTTGCGCCATCGGCAAGGAATCCCTTGGCTGCAATTCAATAAATATACTGAACACAGATAAAACTGTGTTGAATAGCAACAAGGAAACCCACAGTCATGTTTAGCTCGTCTAAAAAAGGATCACAGTCAGATATTGATGTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157571 lncRNA downstream 227696 35791903 ~ 35864754 (-) False G136849
TU157574 lncRNA downstream 235746 35854272 ~ 35856704 (-) True G136849
TU157577 lncRNA downstream 317748 35771628 ~ 35774702 (-) True G136851
TU157576 lncRNA downstream 318117 35771255 ~ 35774333 (-) True G136850
TU157461 lncRNA downstream 336267 35755811 ~ 35756183 (-) True G136751
TU157903 lncRNA upstream 1874 36106315 ~ 36106534 (-) True G137168
TU157913 lncRNA upstream 19124 36123565 ~ 36123800 (-) False LOC110534917
TU157915 lncRNA upstream 19565 36124006 ~ 36124407 (-) True G137180
TU157916 lncRNA upstream 19988 36124429 ~ 36124632 (-) True G137181
TU157917 lncRNA upstream 20408 36124849 ~ 36125124 (-) True LOC110534917
XM_021561056.2 mRNA downstream 4196 36081719 ~ 36088254 (-) True LOC110488725
XM_021561043.2 mRNA downstream 11568 36074139 ~ 36080882 (-) True LOC110488718
XM_021560982.2 mRNA downstream 269284 35819076 ~ 35823166 (-) True etfb
XM_021560989.2 mRNA downstream 269355 35819076 ~ 35823095 (-) False etfb
XM_036947207.1 mRNA downstream 274501 35811748 ~ 35817949 (-) True vsig10l
XM_021619837.2 mRNA upstream 18841 36123282 ~ 36133319 (-) False LOC110534917
XM_021561185.2 mRNA upstream 39446 36143887 ~ 36188948 (-) False LOC110488787
XM_036947333.1 mRNA upstream 39446 36143887 ~ 36188948 (-) False LOC110488787
XM_036947335.1 mRNA upstream 47997 36152438 ~ 36188947 (-) False LOC110488787
XM_021561100.2 mRNA upstream 85146 36189587 ~ 36216362 (-) False LOC110488753
TU157404 other downstream 416745 35674431 ~ 35675705 (-) False drd2l
TU157405 other downstream 416823 35674298 ~ 35675627 (-) False drd2l
TU157060 other downstream 784721 35306367 ~ 35307729 (-) True G136399
TU156114 other downstream 1487972 34604215 ~ 34604478 (-) True G135575
TU155089 other downstream 2226513 33865488 ~ 33865937 (-) True G134668
TU158240 other upstream 265563 36370004 ~ 36370328 (-) True G137479
TU158620 other upstream 529752 36634193 ~ 36639005 (-) True G137839
TU158866 other upstream 721425 36825866 ~ 36828397 (-) False G138080
TU158919 other upstream 740492 36844933 ~ 36849345 (-) True pnrc2
TU159561 other upstream 1356433 37460874 ~ 37463758 (-) True LOC110501508

Expression Profile