RNA id: XR_005034524.1


Basic Information

Item Value
RNA id XR_005034524.1
length 1162
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110533753
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36118066 ~ 36123229 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGTGGTGGACTTTATTGTGCAGGAAAGGGGAAATTGCACCGTGACGTCCAAGTACCTAACTGAGTACAAAGTCCTGCACCAGACTGCAGTCTATCAGAGCAACTTTAAATTCACTCCAGCCTTTTCTTTGGGTTGTTTTTGATGGTTGACATTTTTCTGTTCTATTTGCTAAAGGATTTTTTTGGTTTTTATATTGTAAAACTGCATCCAAGCTTCCTGGAGTGCCGTGCCCTACCCCTGGAAAGTGGGCTTGTTTTTGAATGAATGCACTCTTGCCACTTCCAGACTCATAATCTCTGACTCCAAATCCATGTTACTGTTGGGAAGgTGCCATGAGGCTGCAACACTGCCTCTCCTGGAGCCTCTCTTTGCTACTTCTGCTCTTGTTGACTTGTGGGTACCAGTGCGTGTCGGTCCACTTCCAGACCCCGCAGCCGGTCAATGTACTCCCAGCTGGACGTCTAGTTCTCCAGGTCCAGATCGACCGCGATCCCAAAGAAAAGATCTCCATGATAACCTGGTAGCGGGAGCCAGAGAACGCAAAAAACCCCGGGAATCCTGGGAAAATGATGTTGATTACGTTCTCCGGTCAAGAAAAACGCTTGGACAGGCGTCTGAGTCTGGAGCAGCAAGGGTCAATACTGAAGCTAGAGGGCTTTGGCGTGGCGGACAGCAGAGTGTACATCGTGACCGTCACTGACCAGGCTGGCGTCAAGACCTGTGCACAGTGTATCGTCAAGGAGTACGCCTCATACTTCTCAAGTCACCACCACCAAGCCTCAGTGGACAACACGCTCAACTCACCCTGTTACTTCACAACACAACcaacctctgttctctctccactctgtccctctctcacctctttgAGACAATTTTCAGTTGCAACTTCCAAGTCTCACCTTTCTCACACCTGGTctccttctctgttctctgtctcttgtCTTGGCTGTGCACCACCCCTCAGTGAGTGGAGCAGTGCTAGCTTTTCTACTGTGGAGGCACggtcacacacactgacagtcaCACAGTGCAGATACACATTTCATTTTGAGCTACGGTACGTAATGGAAGATAAAGCCGTATATAGCAAGGAAACAGAGGTCGCTGACAGACGGCAGAAGGGAAAAGAtaaaagaaatgtaaaaaaataaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157799 lncRNA upstream 1198 36116661 ~ 36116868 (+) True G137070
TU157796 lncRNA upstream 3648 36114187 ~ 36114418 (+) True G137067
TU157788 lncRNA upstream 15384 36102314 ~ 36102682 (+) True G137059
TU157686 lncRNA upstream 16059 36101634 ~ 36102007 (+) True G136958
TU157784 lncRNA upstream 25511 36092228 ~ 36092555 (+) True G137055
TU157918 lncRNA downstream 3664 36125914 ~ 36126237 (+) True G137183
TU157925 lncRNA downstream 7647 36129897 ~ 36130119 (+) True G137190
TU157939 lncRNA downstream 21670 36143920 ~ 36145533 (+) False G137203
TU157938 lncRNA downstream 21728 36143978 ~ 36146850 (+) False G137203
TU157940 lncRNA downstream 21728 36143978 ~ 36145017 (+) True G137203
XM_021561090.2 mRNA upstream 4944 36109289 ~ 36113122 (+) True LOC110488747
XM_036947247.1 mRNA upstream 48654 35928900 ~ 36069412 (+) True iglon5
XM_036947245.1 mRNA upstream 252797 35855203 ~ 35865269 (+) False LOC100653444
XM_021561032.2 mRNA upstream 261646 35855203 ~ 35856420 (+) False LOC100653444
XM_036947229.1 mRNA upstream 272180 35828979 ~ 35845886 (+) False LOC110488684
XM_021561206.2 mRNA downstream 94770 36217020 ~ 36227769 (+) False LOC110488805
XM_021561216.2 mRNA downstream 94834 36217084 ~ 36227769 (+) False LOC110488805
XM_021561231.2 mRNA downstream 94871 36217121 ~ 36227769 (+) False LOC110488805
XM_036947352.1 mRNA downstream 94871 36217121 ~ 36227769 (+) False LOC110488805
XM_036947357.1 mRNA downstream 94871 36217121 ~ 36227769 (+) False LOC110488805
TU157787 other upstream 17789 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 80325 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 261666 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other upstream 261666 35855228 ~ 35856400 (+) False LOC100653444
TU157479 other upstream 330596 35785691 ~ 35787470 (+) True LOC110488639
TU158178 other downstream 259642 36381892 ~ 36385856 (+) False LOC110488849
TU158176 other downstream 273036 36395286 ~ 36401971 (+) True LOC110488849
TU159857 other downstream 1654811 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1654811 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1654811 37777061 ~ 37824010 (+) False G139004

Expression Profile