RNA id: XM_021619837.2


Basic Information

Item Value
RNA id XM_021619837.2
length 1275
RNA type mRNA
GC content 0.58
exon number 9
gene id LOC110534917
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36123282 ~ 36133319 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCCACTACGAGTAGGAAGCCCGGTCAGCGTTACTGGGTGACAGACTGGGAGACCAATAACAAGCTACTCACGGACACCGCCGAGCATCAACGCCACCATTCACAGCAGACAAGGCAGGAGGGGCGGGCCCTGAGGCACCAGACAGCCTGTaagACACGCTGGGATGAGAGTGACAGCCGAGACAGGCTGGTTGACAGGATCAATGAGGTCACTGAGCAGAAGGACAGACTGCAGTTCTGCGTACaggcaatggagagagagatcaaagcTCTGACACAGgtgaaggaagagacagagagggcccTGGCAGAAACGGCCATGCCCCTGGAAGTGGTAGTGGAGTGTCTGACCCAGAGAGAGGGCCGGCGGGGTAGCGAGCTGGTCAGTGACCCTCTGGAGGGCCAGCTGAAGAGGGAGGCACAGATGATTGACACCATGCAGCAAGAGCTGCAGCAGCACATCAGCAAGGCCTTCGAGCAGCTCTGCTGTCTCAAGGAAGCCCACCAAcagctgacctttgacctatcCAACAAGACTGAAGCCCTGGATGTGGACCTATCATGCCTGTCACTCACAGACAGGTCACCTGACATATCTTTCAAGCCTGACCCCACCCACGTACCCATTAGTGCCTCCACACACCAAGAGTGGGAGCAGTTCACCCACTACAACGTGACCCGGGCTGAGGAGGAGATGCAGGCTTCCCTACAGCTGAGGGAGACGATGACCTCTACAAGGATACAGGTCCAGAATGACCTGGAGGGGCAGTGGGTCACCACTGGGTTCAACCTGCGCAAGAGGGCCCACCAGCTCCAGCAGGCCTGTAGTCGGCTGCACTGGCAGCACACGGCTACCAGAGAGGAGATCACAGAGCTGTTGAGGGACATCCATCATCTTGAGCAGGATCTGCTGGCTACAGAGTGTCCCCTGAAGCTGGTCCATACCAGGCTGGAGAACAGGAACTCGAGGCCCGGAGTGGACCTCTGCAGAGACCAGGTGCATTCTGGACTGGTGGAAGAGGCTAAGCAGTTGGGAGCCACCATAGAAGTGTTACAGCAGAATCTAGCCAAGTCTAGGCACTCTCTGCAGTCCCTAGAGGAGCAACAGGCCTGTATGGGTGAGGATCTGTCCAGGAAGCAGGAGGCCCTGGAGCTGGAGCAGCGTAGCGACCACATCCGCCAGCACCTGGAGGTCCTGTCTGAGGCCGAGACAGTCAAGATCATCCCTGGAGTCACTGTCCCCATCCCCGGCTTCACCAGAGAGATGTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157903 lncRNA downstream 16748 36106315 ~ 36106534 (-) True G137168
TU157898 lncRNA downstream 18913 36102989 ~ 36104369 (-) True si:dkeyp-97a10.3
TU157901 lncRNA downstream 20781 36102113 ~ 36102501 (-) True G137166
TU157900 lncRNA downstream 22502 36100577 ~ 36100780 (-) True G137165
TU157897 lncRNA downstream 29021 36092790 ~ 36094261 (-) False si:dkeyp-97a10.3
TU157937 lncRNA upstream 8444 36141763 ~ 36141975 (-) True G137202
TU158059 lncRNA upstream 10590 36143909 ~ 36145013 (-) True LOC110488787
TU158067 lncRNA upstream 43682 36177001 ~ 36177306 (-) True G137319
TU158068 lncRNA upstream 44034 36177353 ~ 36177607 (-) True G137320
TU158076 lncRNA upstream 62499 36195818 ~ 36196083 (-) True G137328
XM_036947283.1 mRNA downstream 18841 36092450 ~ 36104441 (-) False si:dkeyp-97a10.3
XM_036947272.1 mRNA downstream 18842 36092450 ~ 36104440 (-) False si:dkeyp-97a10.3
XM_021561056.2 mRNA downstream 35028 36081719 ~ 36088254 (-) True LOC110488725
XM_021561043.2 mRNA downstream 42400 36074139 ~ 36080882 (-) True LOC110488718
XM_021560982.2 mRNA downstream 300116 35819076 ~ 35823166 (-) True etfb
XM_021561185.2 mRNA upstream 10568 36143887 ~ 36188948 (-) False LOC110488787
XM_036947333.1 mRNA upstream 10568 36143887 ~ 36188948 (-) False LOC110488787
XM_036947335.1 mRNA upstream 19119 36152438 ~ 36188947 (-) False LOC110488787
XM_021561100.2 mRNA upstream 56268 36189587 ~ 36216362 (-) False LOC110488753
XM_021561107.2 mRNA upstream 56268 36189587 ~ 36216362 (-) False LOC110488753
TU157404 other downstream 447577 35674431 ~ 35675705 (-) False drd2l
TU157405 other downstream 447655 35674298 ~ 35675627 (-) False drd2l
TU157060 other downstream 815553 35306367 ~ 35307729 (-) True G136399
TU156114 other downstream 1518804 34604215 ~ 34604478 (-) True G135575
TU155089 other downstream 2257345 33865488 ~ 33865937 (-) True G134668
TU158240 other upstream 236685 36370004 ~ 36370328 (-) True G137479
TU158620 other upstream 500874 36634193 ~ 36639005 (-) True G137839
TU158866 other upstream 692547 36825866 ~ 36828397 (-) False G138080
TU158919 other upstream 711614 36844933 ~ 36849345 (-) True pnrc2
TU159561 other upstream 1327555 37460874 ~ 37463758 (-) True LOC110501508

Expression Profile