RNA id: XM_036947352.1


Basic Information

Item Value
RNA id XM_036947352.1
length 1580
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110488805
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36217020 ~ 36227769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCTGTATAAACAGTTCCAGGCGGAAATGGTCGGTCTTTTGATTACGTCACTCCGTCGAATAAGGAAGGGGACGTCATCTTAAACTGCAAGGGTCAAAATTATTGACTCCCCTGTTTTGGTAGCCTGGCCGGTAGgcgcgtttggccagtaaccgaaaggttgctggattgaatcccggagctgacaaggtaaaaatcggttgttctgcccctgggcaaggcagttaacccccaacaaaaACTGCCCCCCTGGAGCCGATGATGTGGATGTCTACcaacatattttacagtcgcagttgtaaatgagaacttgttctcaactagcctacctggttaaataaagGGGTGTCAGAGTTGAAATATGTCGTGGATAAGGGAAGGTGAATTGAACCTCATTGAGAAGCTCTCAGCCAACATACTGAAGGCTGGCCCGATGCCCAAACATGTGGCCTTTATCATGGATGGCAACCGGCGCTACGCCCGCAAGCGTCAGGTGGAGCGCCaggagggacacacacagggTTTTGACAAACTGGCAGAGACACTACGCTGGTGCCTGAACCTGAGCATCCATGAGGTCACAGTGTACGCCTTCAGCATCGAGAACTTCAAGCGGTCTAAAGACGAGGTGGACGGCCTCATGGAGCTGGCCAAGCAGAAGTTCATCAGACTGCTAGAAGAACAGGATAACCTGGAGAAGCATGGGGTGTGCATCCGGGTGTTGGGAGACCTGACACTACTGCCTCTGGACCTGCAGCAGCACATAGCCCGGGCTGTGGTGGCCACCAGGACTCATAACAAATGCTTTCTGAACGTGTGCTTTGCCTACACCTCAAGACATGAAATCGCTAATGCCGTCAGAGAGATGGCTTGGGGCGTGGAGCAGGGACTTATCAAATCCAGTGATGTATCGGAGGCCCTGCTGAGTCGGTGTCTGTACAGCAGTAACTCTCCCAATCCTGACCTGCTCATTCGCACGTCTGGAGAGGTGCGACTCAGTGACTTCCTGCTGTGGCAGACGTCCCACTCCTGCTTAGTGTTCCAGTCAGTCCTGTGGCCAGAGTACTCCTTCTGGAACCTGTGTGATGCCATTCTGCAGTATCAGCTCAATCACAGACCTCTTCAGAAAGCCAGAGATCAACACAGAGAGGGACAGGCCCTACAGCAGCAGGAGGCAGACCGGGCCTGTTTAGCAGACCTCCTACAGCACCACGGCAATGGAAAGCCCCTGGATGCCCAGAGGAGACAGGAAGCACTGCTCAACTACACTGCCAGCCGAGAGGAACGGGTTCAGGACTTCCTTGGTGCACTCCAGCACAAGAGAGACTCCTTCCTTACTGACTTAACCAGACAAGCTGCTCTGGCAtaaagaggggatgagaggaacaTAATGCTCCCCATCTTGAATTGGGGGAACAatcccatctctcttcctcttccctaaAGGGCTGAGTAGTTTTAAACTTCTTATTTTGTATGAGTGATTTTACCCCTATGGGGCTGTATGTGGGATATTTATGTGTATATTCTAAAAGAGAAGTCTGATCAAAGTCTAATAAAAAGAGAAGTCTGGTAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157995 lncRNA upstream 2291 36214519 ~ 36214830 (+) True G137250
TU157994 lncRNA upstream 3305 36213478 ~ 36213816 (+) True G137249
TU157960 lncRNA upstream 6813 36210012 ~ 36210308 (+) True G137223
TU157990 lncRNA upstream 9390 36202488 ~ 36207731 (+) True G137245
TU157980 lncRNA upstream 19544 36197348 ~ 36197577 (+) True G137240
TU157999 lncRNA downstream 1729 36229498 ~ 36233187 (+) False LOC101268898
TU158000 lncRNA downstream 1729 36229498 ~ 36233187 (+) True LOC101268898
TU158002 lncRNA downstream 15835 36243604 ~ 36248682 (+) False G137256
TU158003 lncRNA downstream 15835 36243604 ~ 36248682 (+) False G137256
TU158004 lncRNA downstream 15835 36243604 ~ 36248682 (+) True G137256
XR_005034524.1 mRNA upstream 94871 36118066 ~ 36122250 (+) False LOC110533753
XM_021561090.2 mRNA upstream 103999 36109289 ~ 36113122 (+) True LOC110488747
XM_036947247.1 mRNA upstream 147709 35928900 ~ 36069412 (+) True iglon5
XM_036947245.1 mRNA upstream 351852 35855203 ~ 35865269 (+) False LOC100653444
XM_021561032.2 mRNA upstream 360701 35855203 ~ 35856420 (+) False LOC100653444
XR_002468485.2 mRNA downstream 1746 36229515 ~ 36233162 (+) False LOC101268898
XM_036933854.1 mRNA downstream 47972 36275741 ~ 36278586 (+) True LOC118936744
XM_036947374.1 mRNA downstream 127114 36354883 ~ 36405310 (+) False LOC110488849
XM_036947400.1 mRNA downstream 192982 36420751 ~ 36656060 (+) False LOC110488866
XM_036947408.1 mRNA downstream 192984 36420753 ~ 36656060 (+) True LOC110488866
TU157787 other upstream 116844 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 179380 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 360721 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other upstream 360721 35855228 ~ 35856400 (+) False LOC100653444
TU157479 other upstream 429651 35785691 ~ 35787470 (+) True LOC110488639
TU158178 other downstream 154123 36381892 ~ 36385856 (+) False LOC110488849
TU158176 other downstream 167517 36395286 ~ 36401971 (+) True LOC110488849
TU159857 other downstream 1549292 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1549292 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1549292 37777061 ~ 37824010 (+) False G139004

Expression Profile