RNA id: TU158000



Basic Information


Item Value
RNA id TU158000
length 1033
lncRNA type sense_over
GC content 0.36
exon number 6
gene id LOC101268898
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36229498 ~ 36233187 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCGGTTTCTATCTTATATTTTACATTCGGTCATTATTTTACATTCACCATTGTTGCATTGCTAACGTGGCTAGAAGAGCTTAGTGAGATAGCCAAcaactcacaaaaaaaaaaaaattgtgttgcAATTCCCGAACAATCATCAACATGCCTAAAAGAAAGAGTGCTACCAAGGGAGATGAGCCTGCAAGACGTTCAGCACGTTTGTCATCTagACCTGCGCCAAAGCCGGCGGCCAAACCCAAAAAAGCGGCAGCACCCAAAaaGCCAGTCAAAGGAAAGAAGGCAGCGGAGAACGGTGATGCCAAGGCTGAGGTCTGAAATAAGTCCATTTCCCTCCCATTTCTAGGCGAAGGTTGAAGCCGCCGGAGACGCCAAATGAAGAACTGTTTGAAGTTGTGATCATTCTGTGTACTTGGTGACTGTACAGtttaaaataagtattttttaCCAAGTTTTTTTTATATTAAAAGATATCATTTATAGTTCATTGTGGGCTTACATTTGACGTAATGAAGCTGTTCCAAGGGGTTGTCACGTTCATATCCATTTTTTATGCCTTGTTGAATACCGTCCATATGAATACCGTCCATATCCTGTCCAAGTTTTAAAAAACCACACAAAAAAACTTCTAACCCTGTTTTTTTTACTGCTGAATGTTATTTTCCAACATAAATCTAAACATTAAAGGCAGCTAAAGTGTGTTTCTAAAATGTTTAAGAGGAATAGGGTTTTTGCCACTCCTTTTAGTTTTTTATTGTACAAGTAATATGAATTAATTACATACCAAATGTTTTGAATCAACATCAGATCTTCTCATTCAGGAGACAAAAGACACCGTTTGAAAGTAATCACTAACTTGTATTAGGTCAACACACAAAATTAATAATGTGAACGTAATCATTTGttctattgtttattttattaaattgTTCTGTAAAAACAGTGGAAAGAGCTATTGTGACGCCTATGAAATTTTAAATGTTCTTGAATAAAATGATAAAAAGGCTATTTTTGCTTAATTTAGACATCAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU157995 lncRNA upstream 14668 36214519 ~ 36214830 (+) True G137250
TU157994 lncRNA upstream 15682 36213478 ~ 36213816 (+) True G137249
TU157960 lncRNA upstream 19190 36210012 ~ 36210308 (+) True G137223
TU157990 lncRNA upstream 21767 36202488 ~ 36207731 (+) True G137245
TU157980 lncRNA upstream 31921 36197348 ~ 36197577 (+) True G137240
TU158002 lncRNA downstream 10417 36243604 ~ 36248682 (+) False G137256
TU158003 lncRNA downstream 10417 36243604 ~ 36248682 (+) False G137256
TU158004 lncRNA downstream 10417 36243604 ~ 36248682 (+) True G137256
TU158005 lncRNA downstream 18155 36251342 ~ 36252734 (+) True G137257
TU158013 lncRNA downstream 22073 36255260 ~ 36255446 (+) True G137265
XM_021561216.2 mRNA upstream 1729 36217084 ~ 36227769 (+) False LOC110488805
XM_036933854.1 mRNA downstream 42554 36275741 ~ 36278586 (+) True LOC118936744
XM_036947374.1 mRNA downstream 121696 36354883 ~ 36405310 (+) False LOC110488849
XM_036947400.1 mRNA downstream 187564 36420751 ~ 36656060 (+) False LOC110488866
XM_036947408.1 mRNA downstream 187566 36420753 ~ 36656060 (+) True LOC110488866
XR_002468497.2 mRNA downstream 478897 36712084 ~ 36715233 (+) False LOC110488878
TU157787 other upstream 129221 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 191757 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 373098 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other upstream 373098 35855228 ~ 35856400 (+) False LOC100653444
TU157479 other upstream 442028 35785691 ~ 35787470 (+) True LOC110488639
TU158178 other downstream 148705 36381892 ~ 36385856 (+) False LOC110488849
TU158176 other downstream 162099 36395286 ~ 36401971 (+) True LOC110488849
TU159857 other downstream 1543874 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1543874 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1543874 37777061 ~ 37824010 (+) False G139004

Expression Profile


TU158000 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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TU158000 Expression in each Bioproject

Bar chart with 5 bars.
TU158000 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
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