RNA id: XM_036947374.1


Basic Information

Item Value
RNA id XM_036947374.1
length 6327
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110488849
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36354883 ~ 36405310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCATTCTCCCCCCTCCGCGAAAGGGTGTGCGTTTTGAAAGGTTGTATTTATCTCACTAACGTCACTTTACAGGAGTACATTGGCGGAGTGATAACATCAGAAGTCACTGTCGGAGCCACGCATCCTCATACTGACTGAGTTCAAAGAAGGTCGTGTTCTGTCCGGGACAGGGTACGGCGGCATACACCCGATGCATGGAATGGAGTTCATATATCTCGGATCCCCCACAAATGCAACGTGACAGTTCTAAACGTTTAATTCAAGGTCAATATTGGACTTCGATCAGCTGTAACCGCGGACATTGTTGAGGATATTTATCTTCTTGTGGAACCGGAATTGTATGAGCAGCATCTTTTTCCCGGTCGGCGGTGAGCAATGACATATTTCACCGAAGAGGTTAACCTACGCTCCCAGTATCTAAAAAAACATTTCGGACCAAGTGTTCAATTAAAAAATGTGCTATTTAGGAGAGGATAtgtaactagctaactaacatagCACTGTAGCCGTGTCTTGAGCTCTCCAGGTCCGGTGTACCTTCGACGTTTCCTGATTTCACGAAAGGTGTTAGCCAGCTTGCCACAGTACCTGGAACTGCTGCATCCATCTCAAATAGCTCACTAAAGTttcctagctagccagccaattGTCGAACATGGATATTTTGTGGGTCATTTGGAAAACCACTTGCTAGTGAGGAAAGTGTGTTCATTACACAAATTATTTAAGTTTAAAAAAACGAATTTCAACATGTCTGTTCGCGTAGTTTTACACTCACCCAGTGGCTCCAGAAGTTTTCTGGAGCGGGGACTCCTACTTCTGGTGATGTTGATCTTTCTGGAGGGTACCGCACTGACGCTTGGAGCTGCCAGCTCACCGGACATCAGCGCGCAGGACAACACTGGAGGACACGAACACCTCGACGACCACCAAGGGATAGCAGGCAGCAACGACCGTACTAACTACACATACACAAAAAAGGCCTTCCCTGTCCTGTCTCTAGATTACCATCACATACAGGTGCCTTTCGAGATCTCTTTATGGGTGCTGCTGGCCTCTTTAATGAAATTAGggtTCCACCTGATCCCACGGCTGTCCAGCATCGTGCCCGAGTCCTGTCTGCTCATTGTGGTGGGCCTCCTGGTCGGTGGCCTCATCAAGCTGGCGGGCGAGGAGGTACCACCCGTGCTGGACTCCAACCTCTTcttcctgtgcctcctccccccGATCATCCTGGATGCGGGCTACTTCCTGCCCATCCGGCCCTTCATGGAGAACATCGGCACCATCCTGATGTTTGCCGTGGTCGGCACCCTGTGGAACGCGTTCTTTGTAGGGGGTCTCCTCTACGCCGTGTGCCAGATCGAGGGAACATACCTGAGCCAGGTGGAGCTGCTGCCCTGCCTGCTGTTCGGGAGCATCATCTCGGCCGTGGACCCGGTGGCCGTGCTGGCTGTGTTTGAGGAGATCCACATCAACGAGCTGCTGCACATTCTGGTATTCGGAGAGTCGCTGCTCAATGATGCCGTCACTGTGgtCTTATACCACCTGTTTGAGGAGTACTCTGGTGCAGGTGAGGTAACGCCGATGGACGTGGTCCTCGGGGTCATCTGCTTCCTGATTGTGTCGCTGGGCGGCATCGCCGTGGGTGCCATCTACGGTATCCTGGCGGCCTTCACCTCCCGGTTCACCTCGCACACCCGCGTCATCGAGCCCCTCTTCATGTTCGTTTACAGCTACATGGCTTACCTCTCGGCGGAGATGTTCCACCTGTCTGGAATTATGGCgctgatTGCGTGTGGCGCGGTGATGCGTCCCTACGTGGAGGCCAACATATCCCACAAGTCCCACACCACCGTCAAGTACTTCCTGAAGATGTGGAGCAGCGTGAGCGAGACCCTCATCTTCATCTTCCTGGGCGTGGCCACGGTGGCCGGGCCGCACGCCTGGAACTGGACCTTTGTCTCCGTCACCGTCATCCTTTGTCTGGTGTCACGTGTCATTGgcgtGGTGGGCCTTACCTTTATCATCAACAAGTTCCGCATCGTCAAGCTGACCACCAAGGACCAGTTCATTGTGGCCTACGGTGGCCTGCGAGGGGCCATCGCCTTCTCCCTGGGCTACCTGCTAGACAAGGACCTCTTCCCCATGAGGACCATGTTCCTCACCGCCATCATTACCGAAATCTTCTTCACCGTGTTTGTACAGGGCATGACTATCAAACCCCTGGTGGACCTGTTGGCTGTGAAGAAGAAGCAGGAGGCCAAGCGCTCCATCAATGAGGAGATCCACACCCAGTTCCTGGACCACCTGCTGACTGGCATTGAGGACATCTGTGGACACTACGGCCATCACCACTGGAAAGACAAGCTAAACCGCTTCAACAAGAAGTACATAAAGAAGTGCCTGATAGCGGGCGAGCGCTACAAGGAGCCGCAGCTCATCGCCTTCTACCACAAGATGGAGTTCAAGCAGGCCATCGAGCTGGTGGAGAGCGGCGGGGGCGTCAAGCTGCCCTCCGCCGTGCCCTCGCAGGTCTCCATGCAGAACATCCAGCCCAAGAAGCTGCCGCCCCCTGTAGCAGAGCGGGCCCTGCCTCAGTTCACCAAGGGCCGTGAGGAGGAGATCAGGAAGATCCTCAGGAGTAACCTGCAGAAGACCCGCCAGAGGCTGCGCTCCTACAACAGACACACTCTGGTGGCCGATCCCTTCGAGGACGGATGGAACGACTTCCTCCTGAAGAAGCAGAGGTTGATCGAGCTAGAGAAGAAGATGACAGAGATGAGTAACTACCTCACAGTCCCTGGCGCAATTCCCGACTCCCCCACCATGTGCAGAGCCAGACTGGCCTCAGACCCCAACGCCTTCTACAACATCAAGGCGTCTTCAGACGGCGTCCCCACCATCCAGGTGGACCTGGCCTCCCCCCAGTCCCCGGACTCTGTCAACATGCTGAACGAGTTCTCCAAGGAGGGTGCCACGGGCCAGAGCCTGGGTCAGAGGGAGGGTGCCACGGGCCTGGGTCAGAGGGAGGGGGCTGACCGGGATGAGGACCAAGGCCTGATGATGAAGCCGGCCGggaaaggggagaagggagaggggggcaacAAGAACCCAGGGCTGATGAGGTGTCTGAGTGACCCGGGACCCAGTAATGAGGACGAGGAGGATGAACCATTCCTTCCCTAAAAAAAACAACTAGCTCCTCCCATTGTGAGGAATAGGGAGGGGCCTGGTTGTAGCGGCTCCTCCCCATGAGTGGGGCACTACAGGGGAAAGGTCCACCTCCTCTcactccaccaccacctcattTGAGTTTGCTATCCCATTGGTTGAGGAACCAATAAAGCCAAAACTGTTAAGAAAGGACTTGGGACATAACTTGATTTATGAACCAAAAGAAAAAAGGAGATTAAATAGCCATCTTTTTTCAATAGTTGTCATTGCTCTTTTTTCGTTGTTTAAGTGATAGGAAGGCAGTCGCCACCTTGGGTGATCTTGGGCTTGGTGGGAATTATCCCGAGAGACAGGGGAACATAATTATGCGTTACCAAAGGGTTGGACTGGTTTAGTCACAGACAATGTTCCACATTTTGTCTTCATAACGTTTACGATCGTTCTTCTACTTTCAAGAAAAATTGgcctcattttttttttttgtcagacaGAGTAAACCCCTTTTCACTAGGTGCATTGTATCACACAATTAACCTCTTAAACGGCATTTTTTTAATTTCAGGGTTGATACGAGGCTGTTGTTTATGTGGTTGTCTTTTGTCATCGTTTGTCCTTCAGTTGGTCAGGGTTCTACGTGGTGTACTCGGTGCTGTACACTGGATGTACTTCACACTGGATGTTTTCACTGTGCTAAACTCGACAGACCTCTTCACCAACTCGCCTATGGAGACCCTAAGTCTAAGGAATGTGTCAATGCGCCACACTTGGAAATGTTGCATCGCCGTTTCAAGCGTCGCCTCTCTATTTTAAACGAACATACAAAATCGGCAGCATGGCTGAGATGTGTATGCTGTGCAGTAGAAGATCATTTACATAAAAGAAGGATTGTGATGCAACACCAAGAGATTTGTTGATCTTGAATGGAAATCCCCTATATAAGCCAATCCCTAAAATCACACCAAATACTGTAATACTCCTGACACCCAgccaaaaaaaactgttttgggTTCAAATAATTTACAAAGACAAATTTGTATGTGCACTGTAGtggacataaaaaaaaaagttgatagTAAATATGAAAAATGTATATTACAGTAAATGGGTACAGTAGGTAAACATATTTGCCACATTCTGATGTCTACTACAGAGGGCATTTATAAACGAGCTCTTATTTAGCTCGTATTGAATTTGGAAAAGAATGGTTACACTGCTCTGAAAACCATCCACATTCTTTAAGATATTTACTAGAAGGAATTTGAATTCAAACTCACAAAAATTACAATTACACAAATACATACACTTACCTTCTTACCACAGCATATGCGAATTGTGTTGGCAGCCATTTTGAAAATCCAGGAAGAGAACGTTATCTAGGCCACACCCCCACTCATGTGATATCATTGGATAAACCCAGAATGTCCTACAACAGGACTTAACGCAGTGGCATGTCAAAGAGTGACGAAAAATTAATTGTTGGGTCTCAGGAGGATATTTTACAAGTTTCCTTTAAGAAAAGGCTCTAGTATGGGCCATTTCAGAACCATTTTGTGGTGTTTTCTCCATATTCTCTTGTTGGTAGTCGCATCTTACAATTCATGTTGCATCTTATGGCTCTGATCTATTGTTCTTTTCTCACTTTGCACCTTATTCACATCAAGtattttagacatttttaaaaGACCCTGTTGCCGGTTTAACGTTCCTCATTTGGTTTTTAGCGCTCCCCTTTTGAAAATGTAGTGTTCCATAGCCATTTTGGAGTTTTAGGCATCACTGTGAAGGATATGAGGTGTGGGTGGACTGAACGGTTCTTTGTCGTCTAACCACCTCAATGACCCAGAATATATATTTACGCGTCCACCATCACAGGTATGTTGACTTTGTCAATCCACAACAGACACAATCATGACACGCGGGTTAACATTCACATGAAACACTTATAGACATTTAGCCAGCTAGCTTTTGCTAGCTAGTTTATCCTAGGAGATGGACAtcgggttgttattttacctgacaTGCATACGGTCCGATTATTAGCTGgttctttgtagaattttgacccGGAGTCATACAAAATCGTGCCTCTCTACTCCGATTAATCCACAGGTAAAAAGGGAAACCTAGTTCATTTTTTAGTTCGTTATCTCTAGTTAATCTCTCCTCGTTTAGTCTTTCAAGCGTTCGCGTGGGTTTGTATCTTCCTGATATCCAATAAGGAGGGGACTTGCAGTGCGACCAATGGAACCAAGTTCCATTTTAGCGCTTGGCTACGCAGACACTTGGTCACATACGCAAGCACCAAATGCCCGATGAGGTTTGCATGTTATTTAAAATGCTGGCCTGGAGATACAGGCATGTGCAGAAGTAGCAGTTCAATGCAGTATATTGGTGTAAAATGCGTATAGCGATATATTGATTATAACCATTTAATTGAAAAATGCCCTTTTAAAGCATATGCCATGATGTGATCTTGTCAATGCAAACGAAGAAGTCATCACGGGCTAGCTAGTTGTAAGTAAATTCACATCTGAACGCAAGAGCCATCACCTATTCTGCTCGCACAACAGCGTAAGGCTAATCTAGGGTTTGTATAAAACTATGAAAACCTtgtcatgtacagtatatggttGTATAGGTATtatgtatacagtgcattgctTCTCTTTTCTACACCAAGCCTTAGGATCAATAGGAACAATTGAATAATTGATTTGAAAAGGCTGTTAGCTATATTGTCAATGTGATTACTGTTGTTCATCGATCTGAACATCTCAACGGGACATTCAACCACTTTTAGGTGCAAAGTAAAATGCACCTAACATTGATTCAATAGCGTAGCAACCCCTCATCCCACCTACTGTACAACCAACTTTAGCTGGAGTCTGTAACTGTCTCAACTAGAGAAGCCTAAGATGTCCAAGACCGTGGCCTAGTTTGCTGGCTGTCACCTTGGTGTTAGAATGACCCTTGTCCCTCTCTGACCTCTGTGTGCTATCACTTTATGCCCAGATAGTGAGAGAGGGGTCTCCTTACAGCTTAGGAGAGAGAGGTCTCCTTACAGtttaggggaggagagagagagagagaggtctcctTACAgcttagaggaggagggaggagagagagaggtcacctTACAGCttaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158046 lncRNA upstream 54812 36298120 ~ 36300071 (+) True G137298
TU158028 lncRNA upstream 83701 36270937 ~ 36271182 (+) True G137280
TU158023 lncRNA upstream 88055 36266568 ~ 36266828 (+) True G137275
TU158022 lncRNA upstream 89009 36265628 ~ 36265874 (+) True G137274
TU158014 lncRNA upstream 97787 36256892 ~ 36257096 (+) True G137266
TU158175 lncRNA downstream 9428 36414738 ~ 36415241 (+) True G137415
TU158316 lncRNA downstream 88430 36493740 ~ 36503970 (+) True G137550
TU158317 lncRNA downstream 90387 36495697 ~ 36498945 (+) True G137551
TU158427 lncRNA downstream 282472 36687782 ~ 36688029 (+) True G137657
TU158442 lncRNA downstream 306830 36712140 ~ 36715041 (+) True LOC110488878
XM_036933854.1 mRNA upstream 76297 36275741 ~ 36278586 (+) True LOC118936744
XR_002468485.2 mRNA upstream 121721 36229515 ~ 36233162 (+) False LOC101268898
XM_021561231.2 mRNA upstream 127114 36217121 ~ 36227769 (+) False LOC110488805
XM_036947400.1 mRNA downstream 15441 36420751 ~ 36656060 (+) False LOC110488866
XM_036947408.1 mRNA downstream 15443 36420753 ~ 36656060 (+) True LOC110488866
XR_002468497.2 mRNA downstream 306774 36712084 ~ 36715233 (+) False LOC110488878
XR_005036565.1 mRNA downstream 306774 36712084 ~ 36715233 (+) False LOC110488878
XM_021561331.2 mRNA downstream 315838 36721148 ~ 36732138 (+) True LOC110488885
TU157787 other upstream 254606 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 317142 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 498483 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other upstream 498483 35855228 ~ 35856400 (+) False LOC100653444
TU157479 other upstream 567413 35785691 ~ 35787470 (+) True LOC110488639
TU159857 other downstream 1371751 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1371751 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1371751 37777061 ~ 37824010 (+) False G139004
TU159862 other downstream 1371751 37777061 ~ 37824010 (+) False G139004
TU159863 other downstream 1371751 37777061 ~ 37824010 (+) True G139004

Expression Profile