RNA id: TU158176



Basic Information


Item Value
RNA id TU158176
length 739
RNA type TUCP
GC content 0.41
exon number 7
gene id LOC110488849
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36354883 ~ 36405310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGAAGAAGCAGGAGGCCAAGCGCTCCATCAATGAGGAGATCCACACCCAGTTCCTGGACCACCTGCTGACTGGCATTGAGGACATCTGTGGACACTACGGCCATCACCACTGGAAAGACAAGCTAAACCGCTTCAACAAGAAGTACATAAAGAAGTGCCTGATAGCGGGCGAGCGCTACAAGGAGCCGCAGCTCATCGCCTTCTACCACAAGATGGAGTTCAAGCAGGCCATCGAGCTGGTGGAGAGCGGCGGGGGCGTCAAGCTGCCCTCCGCCGTGCCCTCGCAGGTCTCCATGCAGAACATCCAGCCCAAGAAGCTGCCGCCCCCTGTAGCAGAGCGGGCCCTGCCTCAGTTCACCAAGGGCCGTGAGGAGGAGATCAGGAAGATCCTCAGGAGTAACCTGCAGAAGACCCGCCAGAGGCTGCGCTCCTACAACAGACACACTCTGGTGGCCGATCCCTTCGAGGACGGATGGAACGACTTCCTCCTGAAGAAGCAGAGGTTGATCGAGCTAGAGAAGAAGATGACAGAGATGAGTAACTACCTCACAGTCCCTGGCGCAATTCCCGACTCCCCCACCATGTGCAGAGCCAGACTGGCCTCAGACCCCAACGCCTTCTACAACATCAAGGCGTCTTCAGACGGCGTCCCCACCATCCAGGTGGACCTGGCCTCCCCCCAGTCCCCGGACTCTGTCAACATGCTGAACGAGTTCTCCAAGGAGGGTGCCACGGGCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU158207 lncRNA upstream 3398 36391123 ~ 36391888 (+) True G137447
TU158206 lncRNA upstream 5480 36389527 ~ 36389806 (+) True G137446
TU158193 lncRNA upstream 30999 36364072 ~ 36364287 (+) True G137433
TU158046 lncRNA upstream 95215 36298120 ~ 36300071 (+) True G137298
TU158028 lncRNA upstream 124104 36270937 ~ 36271182 (+) True G137280
TU158175 lncRNA downstream 12767 36414738 ~ 36415241 (+) True G137415
TU158316 lncRNA downstream 91769 36493740 ~ 36503970 (+) True G137550
TU158317 lncRNA downstream 93726 36495697 ~ 36498945 (+) True G137551
TU158427 lncRNA downstream 285811 36687782 ~ 36688029 (+) True G137657
TU158442 lncRNA downstream 310169 36712140 ~ 36715041 (+) True LOC110488878
XM_036933854.1 mRNA upstream 116700 36275741 ~ 36278586 (+) True LOC118936744
XR_002468485.2 mRNA upstream 162124 36229515 ~ 36233162 (+) False LOC101268898
XM_036947352.1 mRNA upstream 167517 36217121 ~ 36227769 (+) False LOC110488805
XM_036947400.1 mRNA downstream 18780 36420751 ~ 36656060 (+) False LOC110488866
XM_036947408.1 mRNA downstream 18782 36420753 ~ 36656060 (+) True LOC110488866
XR_002468497.2 mRNA downstream 310113 36712084 ~ 36715233 (+) False LOC110488878
XR_005036565.1 mRNA downstream 310113 36712084 ~ 36715233 (+) False LOC110488878
XM_021561331.2 mRNA downstream 319177 36721148 ~ 36732138 (+) True LOC110488885
TU158178 other upstream 9430 36381892 ~ 36385856 (+) False LOC110488849
TU157787 other upstream 295009 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 357545 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 538886 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other upstream 538886 35855228 ~ 35856400 (+) False LOC100653444
TU159857 other downstream 1375090 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1375090 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1375090 37777061 ~ 37824010 (+) False G139004
TU159862 other downstream 1375090 37777061 ~ 37824010 (+) False G139004
TU159863 other downstream 1375090 37777061 ~ 37824010 (+) True G139004

Expression Profile