RNA id: XM_036947400.1


Basic Information

Item Value
RNA id XM_036947400.1
length 4928
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110488866
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36420751 ~ 36656060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATAAACCCCCCGCTGCTGTTCCTCCATTCGACTGTGGGTTCGTATGCCTTTGCCATGTTTTGACAAGCCGCTGTGGGTATCCATCAAGAGAGCCCGACCAACCCACTCGGTTTAGCGACAGTATTCGTTTCACTCTAGCCTATATTTTATATCATATTTCTACCTCTCTGCGCTGATGGCGAGCAAGCGGGCGAATACGGTACAGCAAGGGTGCGCACGGGAAGACAAATCATAGAAGGCGAGTGGAAGACACGATGTGTTGATGGGATTGAACTGCAAGCTGCACTATATCTCTTGgatggtgttttttttttgttgcctccATTCTACGGATTTTTTTGGAAGCTAAAACAAATTCTTGCGTGTATGCGACACGGTCTTCGTTCACCTTCGCTGTGTGGGTTGTGTGCTGCGTATTCAGATATGATGAGAGACTGAAGAACGTGCAGATTTCTAACTGACGGTGGCGGCATGAATAAATATACACGTTCATACAGCAGCAGCATCCGCCTACCTTACAGGATACAAAACCAGACGCTTGTGCTTGTGATTCTTCGGTTTTACAGATCATTCTGTGACCTGCAACGGGGACCGCTATGAACGGACCTGCTGATAAAGACGCTCCACGCATGCTTTTACCATCCGGTGATGTATTTGCCAATGATTGTCGCGCCTTGGAATAATGAAGATAAGATCAACTTTACTTTGGCTTTGTGATGGGTGCATTTTATGATCAATAGGCTACGTAAAGTAACGCAACATCTGTGTCATTTTAGTGTAGATTCCGGCATTTTTCGTTAATTCACATCCATAGATTTAGTGCGGATTACGCAAACACAGTGGCATTTATTAGAAACCTGTCGTTTTCTTTGTGAATGTGAGATATTGAAAAACATCAAACGCATGTGCTATGACTGTCATAACCAATACATGCTAATGTGATGTGCACATTATTGGTCTCATTGCCAAACGCGATTGCTACATTTGAAAGGTAACCTTTACCTATGCAGGTCCAATCGATTGCACGATAAGGAGAGTCGTGGCAATCAGTTTGTCACAAGGGTGTGTTTTTCAACCCCTCATATCAACTTTTACACATGCAACAAGGACACATAGGGGAGCTTTCCAGCGGAGAGGGTGTGAAAGTGGAGTGTTGTACAACCACTGTAACCTATAGCCTACTGCTGAATAAATTAAGGCAATCATAAAGAAAAACAATTTCAATGGTTTTCCGAAAGTTGCCCGGTGTGTCAGCATCGGGCATGGGTCTTCGCCTATCCCAGAAATTCGTGTTTCTACTTTTTCTCTCGGGCTTGGTAACTCTGTGTTTCGGGGCCTTATTCTTCCTACCTGACTCTGTCCGTTTGAAACGTATTTTTCTCTCAAAGACGGAGAGCCAACCAGTAACGGTAGGGTCTGAGAATGATGTGAGGGAGCATCTTAAGAAGGGCGCAAAGGACCCAGAACATCTCCGGGGCATCACCTCGGCCAAAGGGGAGACGAGCACAAAACTCAAAGCCTTGAGCCGCAAGCCCTCTGTCACCAATGAGGCTAAAACTGATAAGAAAGACGCTGGCGGGGAAGCGTTGGAGGACATGATGCTGTCGAGGTCTAAAACGGAGTCCGCTTCTAAGGATGAGAAAGTGACCTCGTCTTCTAACCAGGGTGCCAACACGGATACTTCTTTCGATTACAACAAGTTTAAAAAATGTCTGCTAAAGCCGCCCTTGGGGATCGAACATGGCAAGCCGAGCGACCCTCAGACCCTTCAGCGTCGGGAGAAAGTCAAGGAGATGATGAAGTTTGCCTGGGACAACTACAAGAGCTTTGCCTGGGGCAAGAATGAGCTACGGCCCCTGACCAGGAATGGCCACATTGGGAACATGTTTGGTGGTCTGAGGGGAGCCTCCATCGTGGATTCTCTGGACACGCTGTATATAATGGGATTAATGGATGAATACAACGACGCAAAGGAGTGGGTAGAGACCAGCCTGGACCTGAACTCGAACGGCGAGGCTTCTCTCTTCGAGGTGAATATCCGCTACGTCGGTGGGCTGCTCTCTGCCTACTACCTGACGGGAGAGGAGATGTTCAAGAGGAAAGTGATGGTGCTTGGGGAGAAGCTGCTACCGGCCTTCAACACACCAACGGGTATCCCACGTGGAGTCATCAACCTGGGCAGCAGTGGCACCAGTTGGAGCTGGGGCTGGGCGTCAGCCGGGAGCAGTATCCTGGCGGAGTTTGGAACCCTGCACCTGGAGTTTGTCCACCTGTCAGAGCTCTCCAACAATGGCATCTACACAGAGAAGGTTATGAATATCCGAAAGCTGTTGAACAAAATCGAGAAGCCTCACGGTCTCTATCCTAACTTCTTGAGTCCCGTCAGTGGCAACTGGGTCCAACaTCACGTTTCCATTGGCGGCCTGGGGGATAGCTTCTACGAGTATCTGATCAAATCATATCTGATGTCAGACAAGACGGACGAGGAGGCTAAGAAGATGTACTACAGTGCTCTGGAGGCTATCGAGGCTAACCTGGTGCAGAAGTCCCCTGGCGGGCTGACCTACATGGCGGAGTGGAGGGGGGGCATCCTGGACCACAAGATGGGCCACCTGGCCTGCTTCTCCGGGGGCATGGTGGTGATCGGAGCGGACGACGGCGCTCCAGAGAAGAGACAGCACTACCTGGACCTGGCTGCAGagattacgcacacctgccatgAGAGCTACAGTAGATCTGCTACAAAATTAGGGCCCGAGGCATTCCGATTCGACGGTGGGGCAGAAGCCACGGCGACCAGACTGAGTGACAGATACTACATCCTGCGGCCGGAGGTCATCGAGAGCTACATGTACATGTGGAGGTTGACCCATGACCCCAAGTACCGGGAGTGGGGCTGGGAGGCAGTGGAGGCTCTGGAGAAACACTGCAGAGTCGAAGCTGGTTTCTCTGGGATCCGAGACGTGTACGCCCAGACAGTCAGCCACGATAACATGCAACAAAGCTTTTTCCTCTCCGAGACACTGAAGTATCTATACCTGCTCTTCTCTGACGATGACCTGCTTCCTCTGGAGGACTGGGTGTTCAACACGGAAGCTCACCCCCTGCCCGTCGTCCGCAAGAGCTGcctacagggggagggagggacacacgACAAGACAACCTCGGAGTAGCAGCCTGCTGTACAACCCCTGCACAACTCACCTGCATACAGACACAGAATAACACCTATTCTTACATCACATGCATACAAacgcacacacatagacacacacatgaCAACATTACACACAGCTAACACCACCACAACAAAATGCAGGGCCAGCGTCCCTTGGGCCCTGTCACAGACTTTCAATTCCTTTCCAGTAAAGGATCTTGTCGTATACGCTGTGATTGTATATCCTTGAGCCTGGCCGGGACTACTTCCTGCCGGCATTACTTTCTGTGGACAATCAAGACGAACATGATTTTCATGAAAAGAGCACcttttttctttccttctttcctctgTGAGGAAACCAAGAGTATCTTGCAGACCCAAATGTAATGGGAGGAGTGCTGTGTTATGGGCCatattgtgagagagagagagaaaaccacTGAGCTTTTTCTTTAATCGATTGCGGTGAAAAACAGAATCAATGATTTCACTTGATCTTGTCATTGCTTTTTTTTTCTGgcttttttctctgtctctttgacCAAAGTTGTTTGTTCTTTTATTCACCCTCTCATAATTCCCTAAACATATTATTTTGTAGTGAGATTTGACCAATAGTAAGATGACGGACTAATATGGagtgttgaatggtgttgaatATTAAAATGTATAGACAATTGTGAACTGTAATACTCAAAAATCCACCTTAGATGATTGTTTATTCAGAGTTTCTTTGCAGAAACAGGTTAAATGAATAATAACAGGCATGGGAAAAATTGAAAACGGAAGAGGttgttggagagagggagggtctcACATTTTTTCTTTATTGAGTACAATACTGGTGACATATTTTCATAAGGCCAAGTCTGTGTTGAATCCTCCTCACCGCCTTTCAGAGAGTAACTTCACATTGTGTGAGTCCTGTGACTTTAACACAAGGGTCAGTCCTGTTattgtaacactgtaacacaggtTACTGTAGCACTGTAGAACGAGTGTCAGTCCTGTGACTGTAATACTATACAACGAGTGTCAGTCCTGTGACCAACATCGTAACACAAGTGTCAGTCATATTACTGCAACACTATACAACGAGTGTCAGTCCTGTGACCAACATCGTAACACAAGTGTCAGTCATATTACTGCAACACTATACAACGAGTGTCAGTCATATTACTGCAACACTATAGAACGAGTGTCAGTCCTGTGACTAAGACACAAGTCTCAATCCTGTTACTGTAACACAAGCAGTCACAACCACCCAAGAGGCAATATCACCACAGCTAGTCCTAGTTGCCTAGTATGACTGGGCTCAAATATGCTTGCCAAAGTTAACAGCCCTCATCGAGAGCTTCAGCTCTCTCAAATCCACAGTGGGGAAAGTTAGGCTTGAGGTTAAGGGTTTGCTAAAATGTACACCGTTGAGGGGAATGTGAATGGCGCTTTCCTATTTCATCCTTATTCGTATCATCACTGCTGTCCAATACAGTTGTGGAGAGAATGTGCTGTACATACCTGGATGAATGTAATGGACCCCTGTATTAGCTTATCTTCAGTTTATTTTGTGATTTATTTCACTTAATTACAtaattattttcatttatttttaatttgctTCCCTCAGGTGTTTCTGTAAAAGAGGAAAAATGTTTGACTTTAATTATAGTTCTGGTTGATATTAATTATTGTTATTACTTATCTTTCACTGTTGAATATTTTCAAATACTGATAAAAGACCTGTGCAACTTTGTACATTTAAAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158175 lncRNA upstream 5510 36414738 ~ 36415241 (+) True G137415
TU158207 lncRNA upstream 28863 36391123 ~ 36391888 (+) True G137447
TU158206 lncRNA upstream 30945 36389527 ~ 36389806 (+) True G137446
TU158193 lncRNA upstream 56464 36364072 ~ 36364287 (+) True G137433
TU158046 lncRNA upstream 120680 36298120 ~ 36300071 (+) True G137298
TU158427 lncRNA downstream 31722 36687782 ~ 36688029 (+) True G137657
TU158442 lncRNA downstream 56080 36712140 ~ 36715041 (+) True LOC110488878
TU158410 lncRNA downstream 89020 36745080 ~ 36747246 (+) True LOC110533757
TU158475 lncRNA downstream 117090 36773150 ~ 36773510 (+) True G137702
TU158484 lncRNA downstream 130297 36786357 ~ 36786558 (+) True G137711
XM_036947374.1 mRNA upstream 15441 36354883 ~ 36405310 (+) False LOC110488849
XM_036933854.1 mRNA upstream 142165 36275741 ~ 36278586 (+) True LOC118936744
XR_002468485.2 mRNA upstream 187589 36229515 ~ 36233162 (+) False LOC101268898
XM_036947352.1 mRNA upstream 192982 36217121 ~ 36227769 (+) False LOC110488805
XR_002468497.2 mRNA downstream 56024 36712084 ~ 36715233 (+) False LOC110488878
XR_005036565.1 mRNA downstream 56024 36712084 ~ 36715233 (+) False LOC110488878
XM_021561331.2 mRNA downstream 65088 36721148 ~ 36732138 (+) True LOC110488885
XR_005036567.1 mRNA downstream 89021 36745081 ~ 36747247 (+) False LOC110533757
XR_005036570.1 mRNA downstream 121958 36778018 ~ 36780665 (+) True LOC118939566
TU158176 other upstream 18780 36395286 ~ 36401971 (+) True LOC110488849
TU158178 other upstream 34895 36381892 ~ 36385856 (+) False LOC110488849
TU157787 other upstream 320474 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 383010 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 564351 35855149 ~ 35856400 (+) False LOC100653444
TU159857 other downstream 1121001 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1121001 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1121001 37777061 ~ 37824010 (+) False G139004
TU159862 other downstream 1121001 37777061 ~ 37824010 (+) False G139004
TU159863 other downstream 1121001 37777061 ~ 37824010 (+) True G139004

Expression Profile