RNA id: XR_005036565.1


Basic Information

Item Value
RNA id XR_005036565.1
length 1915
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110488878
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36712084 ~ 36715233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTgtctataaaatgagctgctcGTAATGCCTAGATAATCCTTTCTACTGTAGTTTATAACATTTAAATACATAATGTTAGCCATGGATAATTGCAaatatgttgctactgctctcaataatATTGCCTCTCTGAATTTATCAGGCGCTCTCGACTAAGGTCAGTGggaaaagttgtgatggactactttctggacgATGAATGCtgactctctctcattctgaaaataacactttttgaaatcagtggaacacAACAGACCAAACAAGCTGTGCAAACTAAACGGAAACAACACAGGATGTCTTAATAAAGGGGTATCAGTCTGCCGTGAAGgattcatccatgtatacagataacaggagccaggtgcgaaATAACGGTATCGAGCATGAGCGCATAGATATTCTTCAcagcaacagttacatctatcaactgaaGCGCTTAGGGGGCTGGGACCAGctctgcgccaacaatcaacgttaggctggTAGAACACGCCTGACTCTGATCCACCAGTCATAGTCATCAAAAAGAGAGGAAGCGCAAGCAATGGcagcagcgcagtcatcaactgcacgcaccatttcttcaccaactaCAGAGTTGGAAAAACACGTGTGGACCTGAATTGTGATaactgcagtggccaaaacaagaacaagtttgtgctctggtattgtgCCTGGTGGACCATGCATAAGCTCCAGCATAAtctggaccttcacttcctgatcacaggccacaccaagtttGCCCCCAGACTGGCGCTTCGGCCTCATCAAGCAGCTcttcagaaagaccagagtgaacactttgtctgaggttgctggtgttgtgaaggacagcactgtgacaggggtcaacatcccacagctggttggactggaggatgtTACGGTGCTGttggaaagctatggctggcaacaacacctgactccaTACTTCAGGCTGCTGCCACAAatcaagcagtaccagcacttcagCTAAGAGGCTTTGGAGCCTGATGTTGTCGCCAAGGAGCATTCGGACTGTCATGATCAGGTTTCAGCTGCTGTGCTacgctgacatccttcctcccatagatggtctgcctgtaaAAGCatcacctggactggacacagctagacaaactATCTTTTTGACaagatcagggagttttgcgACGAAGAGGCTATGGACAATCCaagccctgcaccaaagtcaagggcaggacagaaacaggctctccgaatatagattcccttgttcatgcgtGGTTTGGACGGACCAGTCATCtgcactatctgcagtgcctctattcacatgactctctcctaacacacacgCCATACGTTGTTGCTACTATTTTTTTGATTATCCcgctgctcagccactttacccctgatcGTATGCATATAACTTCCTCGTCTATCACTGATATCGTTATTGATATTGCTctagtacatactgtatattttatttatattgacactatctatttctgatattgctactatgtaCAAACAATTttgctgtaccgtttacaccttctgtagagaccaaTGACTTAGCAAGACTGATTAATATTGATGTGGGGTTGTAACATGATTTTGTGACATACCACAACAACATCATGTGACCGCATCAAGTGTCCACCACATAAATATAAGTGACGCATGcatctgtttatgtactgtacatgtgcaaAAAAACTAAAACTCCCTCAGGTTGCATGGCCTTAAAACGTATGTATATAATACTATGTGATAagtgcatgtgtaacagtatataaAGTATGCTAATGTACTGGTGTGAAGGCAtttgggcagtggtgtaaagtacttaagtaaaaatactttaaagtactacttaagtagttttttttgtggcatctgtacattactatttatatttttgtcaactttaacttcacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158427 lncRNA upstream 24055 36687782 ~ 36688029 (+) True G137657
TU158316 lncRNA upstream 208114 36493740 ~ 36503970 (+) True G137550
TU158317 lncRNA upstream 213139 36495697 ~ 36498945 (+) True G137551
TU158175 lncRNA upstream 296843 36414738 ~ 36415241 (+) True G137415
TU158207 lncRNA upstream 320196 36391123 ~ 36391888 (+) True G137447
TU158410 lncRNA downstream 29847 36745080 ~ 36747246 (+) True LOC110533757
TU158475 lncRNA downstream 57917 36773150 ~ 36773510 (+) True G137702
TU158484 lncRNA downstream 71124 36786357 ~ 36786558 (+) True G137711
TU158485 lncRNA downstream 71493 36786726 ~ 36787107 (+) True G137712
TU158546 lncRNA downstream 188682 36903915 ~ 36904132 (+) True G137770
XM_036947400.1 mRNA upstream 56024 36420751 ~ 36656060 (+) False LOC110488866
XM_036947408.1 mRNA upstream 56024 36420753 ~ 36656060 (+) True LOC110488866
XM_036947374.1 mRNA upstream 306774 36354883 ~ 36405310 (+) False LOC110488849
XM_036933854.1 mRNA upstream 433498 36275741 ~ 36278586 (+) True LOC118936744
XR_002468485.2 mRNA upstream 478922 36229515 ~ 36233162 (+) False LOC101268898
XM_021561331.2 mRNA downstream 5915 36721148 ~ 36732138 (+) True LOC110488885
XR_005036567.1 mRNA downstream 29848 36745081 ~ 36747247 (+) False LOC110533757
XR_005036570.1 mRNA downstream 62785 36778018 ~ 36780665 (+) True LOC118939566
XM_036947474.1 mRNA downstream 98537 36813770 ~ 36821500 (+) False LOC110534928
XM_036947458.1 mRNA downstream 98677 36813910 ~ 36825079 (+) False LOC110534928
TU158176 other upstream 310113 36395286 ~ 36401971 (+) True LOC110488849
TU158178 other upstream 326228 36381892 ~ 36385856 (+) False LOC110488849
TU157787 other upstream 611807 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 674343 35982832 ~ 36037741 (+) True G136994
TU157486 other upstream 855684 35855228 ~ 35856400 (+) False LOC100653444
TU159857 other downstream 1061828 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1061828 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1061828 37777061 ~ 37824010 (+) False G139004
TU159862 other downstream 1061828 37777061 ~ 37824010 (+) False G139004
TU159863 other downstream 1061828 37777061 ~ 37824010 (+) True G139004

Expression Profile