RNA id: XR_005036567.1


Basic Information

Item Value
RNA id XR_005036567.1
length 761
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110533757
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36745080 ~ 36747247 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGTTTGGCCACATTCTCTTCATGAAGGACGCTTTGTGTCCAGGGCCAGGTTCACCTTCACTGCTCAAAcagggagaggcagagtgagGAGCACGGGAGAgaaagaatagagagaggaactttaaagagaggtgagacagggagaTTAAGAGAACGTGAGACAGcaattgagagagacagatagtgacaggggacaaagagagagagagagagagagagagagagagagagagaaagagagagagagagagaaagagagaaagaaagagagaaagaaagaaagaaagaaagaagtgtGTCCTTCACGCTTTCTTCAAAGACAAACGGGTCCAGGTATCCAGGCACGCACCAGCTGAGACAGAAACATTTTAACACTGGAGATGTACCTTTTTACCACCTTCGTACAAACAACCCTTTCGTTTTGCACAACAATGAGCCGTGAAGGGAAACCAGTGGGGCTGCTATCCGGTTGAAGTGTTAGCCATTAGCCGATTGCTAACATCAGCAGGCTCACCGCAATGTGTTGGTCAGGGGTTCACCATGTCAACCAAGACGCTGATGACACGGGTCCAGGAAGAGCAGTCCCACCAGATGTCCCACAGCATGGCGCCGGCCTCGCAGATCCAGAAGAAAACCTTCACCTCCAGATAAAGGCACCCTGGTACACACCCCCTGCTTCCTCATCATGACATAGATCATGTTTATCCAATGCTTATTATAAAAAACATTGATATAATAAATAAAGAATTTCCAGAAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158442 lncRNA upstream 30040 36712140 ~ 36715041 (+) True LOC110488878
TU158427 lncRNA upstream 57052 36687782 ~ 36688029 (+) True G137657
TU158316 lncRNA upstream 241111 36493740 ~ 36503970 (+) True G137550
TU158317 lncRNA upstream 246136 36495697 ~ 36498945 (+) True G137551
TU158175 lncRNA upstream 329840 36414738 ~ 36415241 (+) True G137415
TU158475 lncRNA downstream 25903 36773150 ~ 36773510 (+) True G137702
TU158484 lncRNA downstream 39110 36786357 ~ 36786558 (+) True G137711
TU158485 lncRNA downstream 39479 36786726 ~ 36787107 (+) True G137712
TU158546 lncRNA downstream 156668 36903915 ~ 36904132 (+) True G137770
TU158548 lncRNA downstream 158218 36905465 ~ 36905799 (+) True G137772
XM_021561331.2 mRNA upstream 12943 36721148 ~ 36732138 (+) True LOC110488885
XR_002468497.2 mRNA upstream 29848 36712084 ~ 36715233 (+) False LOC110488878
XR_005036565.1 mRNA upstream 29848 36712084 ~ 36715233 (+) False LOC110488878
XM_036947400.1 mRNA upstream 89021 36420751 ~ 36656060 (+) False LOC110488866
XM_036947408.1 mRNA upstream 89021 36420753 ~ 36656060 (+) True LOC110488866
XR_005036570.1 mRNA downstream 30771 36778018 ~ 36780665 (+) True LOC118939566
XM_036947474.1 mRNA downstream 66523 36813770 ~ 36821500 (+) False LOC110534928
XM_036947458.1 mRNA downstream 66663 36813910 ~ 36825079 (+) False LOC110534928
XM_036947468.1 mRNA downstream 66663 36813910 ~ 36825082 (+) False LOC110534928
XM_036947454.1 mRNA downstream 66669 36813916 ~ 36825081 (+) False LOC110534928
TU158176 other upstream 343110 36395286 ~ 36401971 (+) True LOC110488849
TU158178 other upstream 359225 36381892 ~ 36385856 (+) False LOC110488849
TU157787 other upstream 644804 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 707340 35982832 ~ 36037741 (+) True G136994
TU157486 other upstream 888681 35855228 ~ 35856400 (+) False LOC100653444
TU159857 other downstream 1029814 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1029814 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1029814 37777061 ~ 37824010 (+) False G139004
TU159862 other downstream 1029814 37777061 ~ 37824010 (+) False G139004
TU159863 other downstream 1029814 37777061 ~ 37824010 (+) True G139004

Expression Profile