RNA id: XM_036947458.1


Basic Information

Item Value
RNA id XM_036947458.1
length 5529
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC110534928
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36813770 ~ 36825082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaacacacacacttactcatgcacacacatacacacggacgcacgcacacacatggtcACTGTACACACACGCAAAGGGTTCGCACCCACGTGCACGTTTACTCTctaaaacacacactctctctttctctctccctctacccacccTGTCATTCGGTAATGGAGCAGTTCAGTGCACAGCCGTGGCCAGCTGTGTTGGCCCCATGGTCTTTCTCATAAAATGGCTGCCTGTTGTGATATTCATATTGGAAATGGAGAGAGCCACACACCATTTATCCCGCACAGCCCATTAATCCAGCTGAATCCATCCTGATCTCCCCCGTATCTTAAATAATTTAAATGCGACTGAAAATCGTTAAGCAAATGAACTACCGTGCACTGGCACTAAAAAACGAAGGGGTAGATTAAGCAAAATCACGTTACTTGctttttaaattgtattattattatttgtttgtttctttATGATGGCCTGCTCTGTCACAGACAACTTGGCTGTTTATGGGTGAGTATATGAGACGGGAAAAGGACGAATAACAATATTCTCCCTGTTTTAGCCTGgttttaaatcatttcaaatacgtTATCTGTGCCTGAATAAGCATGCATGTTGCAATGTAACCAATAGAAAATCCCCAAAAAGTGCAGACCCTGCCCACCTGGCACTCCAGTCAGGATGAACCAAACACTGATTTCAAATAGTACTTGAACCCAGGTTTGGTTGGTATATTTCTAACACAGTAGACACTTATCAATCCATGTACTGTATAGAATGAAACACTGTATGGGTTGACACAGATAAACAAATGTGTGTTTTTCCCTCATATTTCTCTCTTTGTGTTATGCTAACCCCACTCATCTCCCAGGCTGCCCTTGTGTCCTGGAATTCAGGGAGGTGAGGGTTAACTCTCTAGTCCTCCTGTGGGCAGTGCCTCTCTACGAAGGACAGCAAGGACCAATCACAGGGTACCTGGTGGAGCTGAGCGAGGGAGACCAATCACAGAGCTGGACTGCTGTGAATGAAGAGCCAATTGCAGACACGGTTTTGAAGGTGTCAGGTCTCTATGCTGGTCAGACTATCGTCTCAGAGTATGTGTCTTCAACaaggctagaatgggcatccctTCTCTGCCCTCTGAGCTTATCAGAGCCCAGAGCCCAGACCCAACCAGACACCAGAGACATAGAGATTGGTGTGGACAATGATGGCTTCGTCTTCCTAGCCTTTGAGGCCACTGAAATTACGGAGAAGAGCATGTTTATCTGGAGCAAAAGCTACAAAGAGGCTATTGAAGCTGGGAGAGCCAGGGTACTGTGGGAGAACAATAGATCTGGAGAGACTGACCGAGCTCGGCTGGCACATCTGCCACCCATGTAAGACGTAGTCACTGTAATAATACAAGTCTCTATCGAGCTAAAACAATTGATTGTACTCCTTTTCAAATCGAAACGGGCATTATAATACATTGTTCAACATCACAATTTCAACAACCTATTCCCTCAGATGTTTTCTTGGGTAAGTCCTATTTTTTGATTCCTGTCATTGCGCCCTTCCTAGATTATTTTAGTTTGCTGAAGCTTGGAGGCCAACCTGAATGCATAACCTATTCCCTATTCATTGTTCCCTCCCCCTACAGTGATAGCCTTGCGCTCCAAGTGGCAGGTGGAGGTGTCAGAGAAAGGGAACGTAGGTCTCTGGATGCAGACTGAGAGCCTGAGCAATGCTGCAGAGCTCCACCTCATTCTCAGCGACAGAGAGATCTCTAGTGCTGCAGTAAAGGAGCACTTCAAAACACTGGCTATATGTTCTAATCTCAGAACCCAGAACTAAATATTGTGTGTACTAGTCTGTCAGGAGAGTGTGTATGTCTCAAATGAATACTAAAACTAGCTTGGGTGTCAGAATGTTCCTGCTTTAGTCAATGGTGCAGTAATGTATGAATAGGAAGACGATGACAAGTTGGctgaaacagaaacagactggtcCAAGTTATAGCTTGTCTCCCAGAGGTGTGTATAACGCATAAGCTACTGCATTTTGCATACACACATTTATTTTTGAATATATGCAGATGATTGTGTTTCCGAATCCATTTCCAGTGAAATTCTCCATAAAATAATGAAATGTAGATGTGCCACAAAATAgctaaatgttttatattttctcATTCAAGTTTGCATTAGTAAGAGGTATTGGCTGTATAGAACGAGAAAGTAATCACAAAACAATCACAATCCAAAAATGTTACCCTCGCCATCATATTTGCAATTTCATTTAAACACAAATCACCTTCATAAAGATTTTCACCAGAATGTACGTAGCAACATCATAGCAATGTTGATTTGTTATGAAATCAACCTAAAAAATAACCACAGGCTGGAAGATTACTGTAGGCAGAGGTTGTTGCAACAGATGTGGATTTTCCATGGGGTTAAACTAATATTACCCAACATGCATGTTTTTGGACTCAGTGTCTTGCATGTGGTTACTCGATATGGAATAGCATGATTACATCCATGCACGTGTGTATACGTGTACGTCAACACTGCTAAGTGCTAAGGGTTTATTACTAAATGACTACAGATAAGGATTTTGTGAATAAACCAATCCCCATTTCCCCCATTTTAGAACCCTTGCCAAGTCACACTGTGAGGTatgcagcctgtgtgtgtgtgcacatgtatgTACAtacatgtgcttgtgtgtgtcctctctctctctctctctcggccagTAAGATTAACTTTGACAAGGCCAGTGGGCTGATAGAGATCCTGTTTGACCAGCTGTCTAAGGAGGACGAGGGCTCCTACACAGCTCGGCTCTGCGACGGCCACGCCAAGAACCAGTTCGCCCTGGTGCTCGTGGACGAGAGTGAGTCCATCTGGTCACCCCAAATCACTGCCGGGATGTTCATACTACCGAACCGAGCTGAGCTAAACCAAGCCGTGATGAGCTGGCCTATTTTCGCATCCTCCGTAGCTGCTGGAAGTGAGTTTTGTCAGACACTGGCTCAGTCCAGAGCTAACAGAATGGACTACAAGAGAAAGTCAGGACCCTATTTTTTGGAGTTGTTGTCATGGACCGTGACAGAGGACTCTGAGTTTATAACCAAATGCAAGGTCCAGGTGACCAACGTAAGCAAGGATACGACTCTGAAGTGGTTCAAGGACGGCGTGGAGACTCCAGCTGTGTATGACCAGCAGACTGGAGTCCGCACCATGACTGTGCAACAGGTGACTAAGGAGGAGGCAGGCCACTACAAAGCTGTGGCATCTGATGGTGGAGGACAGGATGTGAGCACACTGGAGTTGCTACATGAAGAGTATGACAAGCTCCTCCAACTCCTGAGCAAACAGTGGGACGGGGGTCTTTCCGGGCAGGATGACGATGATGAGCTGCAGTCCAGTACTGAAACATGAGTGACTTCTCAAGCATTCTATGGACAGTTTTTGGATGGGAACAACTTAAGATGAAGTCATATCCTGACTACAGCGCTGTCTACAGGCCCAGTGAGGATTCAATGCACTGCTATGGGCTTCAAGCTCTACTGCTCTCTCAAGTACTATATCAGCTACATGAAGACGAGCTGGCAATTCAAGGAGAGTAGGATTAACCAGTTGGAGAGGTGTAAGCCTGGCAGCAGTATGCAGAAGCTGTGAGTCGAGGTCTTTGCGCCCACGGAGAACGATAAGGGGAAGTACACTCTGGAGATGTTTGATGGTCAAGAAAAGCACACCCGCTCACTAGACCTATCTGGACAAGGTTAGTCTGACCAGTCTGATTCACTCAAAAAGCACTATTGTCTCAAAGCAGTTAAGCGAAATAGGCTTCATACAGGGATTTTACTGCTGCAGATTCATGTCAATGTCTTCACCACTAGAATGTAAACCTCAGAATTGGACTATTATTACTCAATTATCATTTAATTTGTCTGCAATCTTGATCTACATTCATATCTTCCAAGACAGGCAGTTGGTGAATATTACATTCATCCGAAATACATTTCAGTAATCTATATCTAAATATCGCTCTCTTTAAAAAGCCTTTGCTGATGCTCTGTTGGAATACCAGAGGTTGAAGTAAGTGCAGTACCATATTGATGGTGAGCGCCCAGCATGGCGCGCAGTGGTAAACACTAACACAAACAATTGCAGGTACTATTTTCTATCACTATTCTCACATGGACAAACAGAAAACTGTTCTATATTCAATATTAATGAGTTGACATATAGTATGGTGATAGATCTGAAACCATTTGCAAATCGTTGCTGAGCGGTTGCTGAGAAAAGTGAGTAGCATACTCTTTCATTGTTTCTTAATTGTTTCATTTTCTGTACACTGGAATGATTGAATGAGCTTCCTATGGATGATTCAAGGGAGTAAATGTCCTTCTCGTTGCTTTAGATCGGGCCAGGGTGACCAAGGAGCTACCAGATGTGGTGGCTATCATGGAGAATAAAtctCTGTGCTTGACCTGCTTCGCTGACGGTGACCCTGCCTCAGAGATGTTCTGGCTGAAGAACGACAAAGGCATCGTCTCAGGGGGCCAGTTCAACATCGCCAACGAGAACAAGTGCAGCACTATGACCCTCAACAGCGTGACTAGCGAGGAATCAGGCAACTACAGCATCTTTGTGCGCAACCAGTACGGCACTCAGACGGTGAGCGTGTACAAGCATGGCGAGAAGCCCCCGCGCACGATGCAGTGGAGATGTAAGGAAGGAAGGAGTGTTGGTTTTGTTGCACTAAGAGACGATTACAACTGGGTgcagacgtcaattcaatgtaATTTCCACGCTGGTTTCACATGACAtgaaaacaacgttgattcaaccagtatgtgcccagtgggttgtgtttgtgtggttgaGCCAGTTTGTTTTCATGGGGTTAAATTGGAGTTAATGGGGAGTGAAATGCTAGAAGCGGTTCATTTGTGGCATTGGGATGTAAGCAATGACTAAGAAGTTACTTGTGCTAGAAGGAATGCGGTCAATTAGGACAATGTGAGGTCCAGTCAAACCTGCAACAACCTGTTTTCTTGTGTCATTAAACTACCAATAAATATCCCAAGAGTGTCAGCTACAATTGTATGATGTCACCCCTTTCTTTCTGGAGCAATTTAATAATAGGACATGTGAGCAGGGGCTAGAAAGCTTGGAGGTAGGATTCATTGGCCAAGGCGAGCACGTTAAATGTTCATTTCATGTCTTGATAGCAGCAGACTTGATGCCAATTGCAATTAACTCCCATGTTGTATTTCACTAGAGGTGTCATGTTAGTCATGTACACGGAGCAGATTTACATAGGTGCACGACACATCCAGTGCGTTTTTCTATATCAACCTAATTTATGCTCTGACCTCCCTGTATTAAGGCTGTAATCTCACTCAGAGTCGGCACCTGCAGCTCAAGTCGGTCTATTAGCCTGTTAGCTTTCCACATACAGCGTTTGTCATATCATGTGTCTCTGCAATCGCTTTGAAAAAAGCTGCTAATAAATTAATTTGATCTTAGTGGCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158485 lncRNA upstream 26803 36786726 ~ 36787107 (+) True G137712
TU158484 lncRNA upstream 27352 36786357 ~ 36786558 (+) True G137711
TU158475 lncRNA upstream 40400 36773150 ~ 36773510 (+) True G137702
TU158410 lncRNA upstream 66664 36745080 ~ 36747246 (+) True LOC110533757
TU158442 lncRNA upstream 98869 36712140 ~ 36715041 (+) True LOC110488878
TU158546 lncRNA downstream 78836 36903915 ~ 36904132 (+) True G137770
TU158548 lncRNA downstream 80386 36905465 ~ 36905799 (+) True G137772
TU158553 lncRNA downstream 123897 36948976 ~ 36949256 (+) True G137775
TU158556 lncRNA downstream 127823 36952902 ~ 36953127 (+) True G137778
TU158565 lncRNA downstream 143100 36968179 ~ 36968620 (+) True G137787
XR_005036570.1 mRNA upstream 33245 36778018 ~ 36780665 (+) True LOC118939566
XR_005036567.1 mRNA upstream 66663 36745081 ~ 36747247 (+) False LOC110533757
XM_021561331.2 mRNA upstream 81772 36721148 ~ 36732138 (+) True LOC110488885
XR_002468497.2 mRNA upstream 98677 36712084 ~ 36715233 (+) False LOC110488878
XM_021561342.2 mRNA downstream 656 36825735 ~ 36827081 (+) True LOC110488894
XM_036947491.1 mRNA downstream 10102 36835181 ~ 36839924 (+) False LOC110488899
XM_021561355.2 mRNA downstream 10462 36835541 ~ 36839924 (+) True LOC110488899
XM_021561380.2 mRNA downstream 34629 36859708 ~ 36870284 (+) True cnr2
NM_001195162.1 mRNA downstream 49403 36874482 ~ 36898752 (+) True LOC100499584
TU158176 other upstream 411939 36395286 ~ 36401971 (+) True LOC110488849
TU158178 other upstream 428054 36381892 ~ 36385856 (+) False LOC110488849
TU157787 other upstream 713633 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 776169 35982832 ~ 36037741 (+) True G136994
TU157486 other upstream 957510 35855228 ~ 35856400 (+) False LOC100653444
TU159857 other downstream 951982 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 951982 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 951982 37777061 ~ 37824010 (+) False G139004
TU159862 other downstream 951982 37777061 ~ 37824010 (+) False G139004
TU159863 other downstream 951982 37777061 ~ 37824010 (+) True G139004

Expression Profile