RNA id: XM_021561369.2


Basic Information

Item Value
RNA id XM_021561369.2
length 3389
RNA type mRNA
GC content 0.43
exon number 3
gene id pnrc2
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36844929 ~ 36849373 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCTTCCATTTTGTTGCAAATCAGACAGTCGAGAGGGAATATAAGTATACATATCTTTTACACCGTGTAAGCTCCACACATTTCTAGATTCTCCATCCAGAGATTTCAgacttcaataaaaaaaatttgACAAACGGCTTTTACCAACCAAGCCTGAGGAAGTCGCTCGCCGCCTTGGAGCATTTTCGTGCGCTGAAGTGAATTGATGTTCTACTCGGCTTCACGGGAAAACGACGCTCATTGGCACATGACAACTCCAGTTCTTGCTGGACCTAAAAGTGCAGCGAGAAGTAGATCGAAGACTACTTCGAGGACCTGGAGCCCAATTGGAAAGGAGAAATTAAGGAAACATCTCTGCACATTCAACTTTCTAACAACAAAGAGGTGACACACTGTGTGAAAAGTACAGtatgggaggtggagagaggtacaACATTCCAGTGTCCCACCCAGAGCGCCCATTGCCCAAGAAGAACCATCAGTTGGGCCGGGCCAAGCAGAGAGTTGTCCGCGATCAGAATGGAATGACAACAGTAGCATCCTCAGGGGCTGCGGGAGGTCCTCACCAACATGGCCACCGCAAGGGAGCAGCCTACCCCTGGTTTCCAGAGGCGCGGCTGGCCGCGTCGGCTGAGAAGAAAAATGCTTCTGTCCGTTTTGCCAACACCTATGATCAGATTTGGGAGGGCGCTGTGTCCCACCTGAACACACTTCTGGCTGCCCAGTGTGGTGGCCCGAGCTATGCAGGGGCCAAGTTCAGCGAGCCACCCTCCCCCAGCGTGCTACCCAAGCCCCCCAGCCACTGGGTCCCCATGGGTACCCGTGACAGCAGGGAGATGATGGCCTTCCAGCTGAAGAGCCTCCTCAAGGTGCATGCCTAGAGATGGACTCCCATGACCTGGTCTTTCAAAGCCAATGTGTGAACGAATGCCCCTCTGAAGACTCCTGCCTGCCTAGAATGCCCCAGCGTTGTAATACACTTTTAGCTATTTTAGATTTGAGGTCTTCGCAGGGTGGGAGGCATTTTGCTGGAAAATCTCTCTGCAAATGTTTGACACCCTTTTTGTTGAGAAACCACAGATATTACAGCGCTGCAGCCTTGTCGGTGGGGGAGACTGTTCTCATTGGAGTCTGTTTCTGTCACTAACGATGAACTGGATATCCGTCGTGCTCtgttcttttttttgttttgttctttTTTTGTTGGCCGTTATAGCAAGTCTGTGGGCTTCTCTTCCCAAACGGTAGGGTTGGATATTAGTATACACATGTTCATGCGGTCTCATTTACAGTCCATTTCTGTGGACAGGTAATTCTTACTTTGGCACGTTAAGTTCTGTTAATCATTAAGGATTTCACCTCTGATAACCTGGTGCTGCCTGAAGCACAATCTACAATAGTAGCATTTCTTTTTAGTTTGACTTATTATTTTCCATCTTGTTTTTGGGGGATGTAAAAGCCACTGTTCTGCAGGGAAACCAGAGCTATCTTTCAGGCGAGAATCAGCTGTAGTAGTGAGTACAGGTCACAAGAATAACCTCAAACTGAAGTGTAGAGGCCATGGCACACAGGCCTTGGACGTTCAACTCCTGTACTTTTTTATTGCGCTGTGCGCACTGCACTATGGCAGTTGTGCTGGTCCAAGGCCTGCAGCTCTATCCTACAATTATTTTGTCTATTTGTGATGTAGTTAATCAATGAGTCAGTTTTGTCTTAACCAAAGCAATGTTTTTTGTTGTGATTTTTCTTTTTCTCGCCATCTCTCCTTTGTATGTCTGACGTGGTTACCAGTGCCATATCAACCACGTTGGCTTGAGTGGCGCAGGGAATTGGTCCTCTGGGTCACTTTTTCAATGCAATCAGTACTGCTATTAGCCACTTTCAAACTATCTCCTTCCCTACTGAAACCCCACCCAGTAAACAATGCGGAAGAGGGCCAGATTCAACAGGGATGTGGGACTGTAAGTTTCGCAACCTCGATCTCCTGTGTCATGGCCCTGTTTGCTGTGTGGTAGTTTCTTACGAGGAAGTGCAAAGTTGAGAGAAGTGCGTAACGTGGCACAGAGGACGTTAGGCGCAAGGCCAGTGTGGATCTGTTTACATTTAAAGTATCCAGCAGCAATCTCCAGATACTCACTGCCTCCTGCACCCTATTCTTGCACTGCAATCAAAATTGTTTTCAGAAGTTACAGGCTGAGAGGCCCTTTTTATTGGTGGATGGTTAATTGACTATCTCCCTCTAGGTTCTAATTTGAGGGGAGGCAGTCTTTTATTTTCTTTGCAGAATGGGAACTGTAATGGCCATCTTAGAGACGACAAAACAGAGCTCACGAGCTTGAAATAAGTTAAAGAGCCATGTAAATAatgaaatgtataaaaaatacttGTAGCATATGTACATTTAGCAGGGTGTTTTTAAACCTGCTTGATAAAGTATTTTTTAGTAATAACACTGAATGTATAAGTCATGCTAAGGACATGTCTTGACTTCAAATACTGAATATTTTTGTAAAAAAGAAATCTGCCTATAGCATTTGTCAATACCCCTGCACTGTGTAATTATTGCCAGTAATCTTGcacatgttttttattttgtattatgcaCAGTgtagggtaaaaaaaaaatgcagtgtGCAAAAAAACGTAACTTACATTTGACCTTTTGAGTTGACTTCGATATGTATGAATTGTTAAATTATTTTAGTTTCCAGGTGTGCTACAGCCTGAAGACGGCCACTgggggctggtttcccagacagatTAACCCCAAACCTGGAttaaaacaactatttcaatGGATAGTCTccattgaaatatatatatatatatttttatctagGACTACTTATGATTTGTCTGGAAAATGTGCCCTGAATTGAGTTTGTCAACTTGATTGTGCCTACATTTTAACCCAACATTGCAAACTTTTGTTGTTGAACCAACATGGACTTATATTTTTTGATTAGGTAATGTTATTCATTGACCAAAAATGTATATCTAAAAACCACCTTCAATTATCTGCTGTTCTTCTGCTAGAAGATAATTGAATTTGGCCCTATGTTATTGTGAAACTGTTTTTCAACTGCTTTTGTTTTGATATCTGTGTTTTTAATGCATTGCTGTTTATTTTTAAAACAAAGATGTCCTGTTGGTTTCTGCTAATGATTCATACATGTATAAGGCTCTTCATCCTAAATTTGAAACTGAACGGTTTCTCAACAAATTGGCTCTTAATTTGTCCCATTTGTTCACTGTCACCAATGCTCATGAAATTATGCCACATGTCCAGACCTGATTTgaatttgacaaaaaaaaactaaagtaCTGCTTTAATTGGTCTGATCAAagtaaccccccaaaaaataaaatccCTTCCCTTTCCCCCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158871 lncRNA downstream 16532 36825792 ~ 36828397 (-) False G138080
TU158867 lncRNA downstream 16532 36825866 ~ 36828397 (-) True G138080
TU158870 lncRNA downstream 17845 36825792 ~ 36827084 (-) False G138080
TU158890 lncRNA downstream 54406 36790286 ~ 36790523 (-) True G138099
TU158887 lncRNA downstream 60028 36784597 ~ 36784901 (-) True G138096
TU158937 lncRNA upstream 20662 36870035 ~ 36874281 (-) True G138145
TU158940 lncRNA upstream 48519 36897892 ~ 36899091 (-) True G138146
TU158962 lncRNA upstream 68214 36917587 ~ 36918192 (-) True G138167
TU158947 lncRNA upstream 72798 36922171 ~ 36925845 (-) True LOC110488943
TU158948 lncRNA upstream 93892 36943265 ~ 36946080 (-) True G138153
XR_005036564.1 mRNA downstream 303731 36487954 ~ 36541198 (-) True LOC118939565
XM_036947382.1 mRNA downstream 489139 36299063 ~ 36355790 (-) True LOC110488840
XM_036947385.1 mRNA downstream 521602 36299063 ~ 36323327 (-) False LOC110488840
XM_036947395.1 mRNA downstream 521697 36299063 ~ 36323232 (-) False LOC110488840
XM_021561266.2 mRNA downstream 526737 36299063 ~ 36318192 (-) False LOC110488840
XM_021561436.2 mRNA upstream 72729 36922102 ~ 36925882 (-) False LOC110488943
XR_002475036.2 mRNA upstream 414803 37264176 ~ 37272975 (-) True LOC110533765
XM_021561473.2 mRNA upstream 483274 37332647 ~ 37337607 (-) True LOC110488968
XM_036947585.1 mRNA upstream 592986 37442359 ~ 37463839 (-) False LOC110501508
XR_005036591.1 mRNA upstream 614612 37463985 ~ 37476762 (-) False LOC118939571
TU158866 other downstream 16532 36825866 ~ 36828397 (-) False G138080
TU158620 other downstream 205924 36634193 ~ 36639005 (-) True G137839
TU158240 other downstream 474601 36370004 ~ 36370328 (-) True G137479
TU157404 other downstream 1169224 35674431 ~ 35675705 (-) False drd2l
TU157405 other downstream 1169302 35674298 ~ 35675627 (-) False drd2l
TU159561 other upstream 611501 37460874 ~ 37463758 (-) True LOC110501508
TU160127 other upstream 898068 37747441 ~ 37752958 (-) True G139231
TU160230 other upstream 1197329 38046702 ~ 38048608 (-) False LOC110489105
TU160231 other upstream 1197329 38046702 ~ 38048347 (-) False LOC110489105
TU160233 other upstream 1197329 38046702 ~ 38048666 (-) False LOC110489105

Expression Profile