RNA id: XM_021561393.2


Basic Information

Item Value
RNA id XM_021561393.2
length 2472
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC110488922
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36907263 ~ 36915609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGCAAAATGCCTGCGAAATTTGCGCTACATTCAACTTTTTAGATTTATGAAATGAGATTCAGTAGTCTATTCGTTTCAAGTGGGGGTGCTTCAGTGGTTTGTTTGGAAAAGGAAGGAAGTTCGTAGCAGGAAAAGCGAAGGGAGGTCTATAATTATCTCAAGTCATTTATCAGAATTGACCGTCATTTTCCCAAGGACAGTAGTGAGGGTTTTACGCGCCTTGGAATGTCCGGACTGTTTTAGAATTGCTTGAAAATATAAAAACTAAATAAAAAGTATTAAAGAGAAACTTCTACAGTAATTTATATATTTTAAGATGCTAGTGGAAACGTTGAGTTGAATCATTTTACACGACAGCACTACCAATCAGTAACGTCACGCTACGATCTGAGTGATGGACAGAGACATTGAAGAGCAGGACCCCCTCGCCGTAGACCCTGTAGACAGAGATGGGAGACAGATGGGGGATGCGGGAGGTGATGATGATGGGAATAGGAAGGTTGGATGCTGCGAGAGGTTCCATCGCTCCATCTCCAAGTGGATGCTTCCGGAAGAACTCCACGAACAGTACCGGGAGCGAGCCAACTGCTGCCCCCCTCCCATCTTCATCATCCTCATCAGCATCGGAGAGCTAGCAGTGTTTATATACTATGCGGTGTGGAAGCCACAGAAGCAGTGGGTCACCCTGGGCGAGGGCATCTGGAACAGCCCTCTCACTTACAAGTCTGACCGTCGGGAGGAGGCGTGGCGCTTTGTCTCCTACATGTTTGTCCACGCTGGCGTGGAGCACATCCTGGGCAACCTGGTGATGCAGCTACTGCTGGGCATCCCGCTGGAGCTGGTCCACAAAGGCTTTGAAGTGGGCATGGTCTACATGGCAGGCGTCCTAGCAGGCTCCCTGGCCAGCTCCATATTTGATCCCCACAGTGCTCTGGTAGGGGCCTCTGGGGGGGTATATGCCCTCATAGGTGGATACTTCATGAACGCTGTTGTGAACTTCAGAGAGATGATTCCTCTCCTTGGAGTGTTTCGTATTGGAGTGATTGTGATTATCGtCGGGACAGATGTCGGATTCGCCCTTTACAGAAGATTTCTTACTCACGACGTTGGCTTGAAGGTTTCGTTTGTGGCGCACATTGGAGGAGGAGTGGCTGGGATGACCATTGGTTACGTGTTCTTCAGCGCCTACAACCAGAAGCTCCTGAAGGACCCGCGCTTCTGGCTTTGCATAGTCGGCTACGTAGTCTTCCTCTTGTTCGCTGTGCTCTTCAACTTCTTCCTTTCCCCTGCATAATTTCACACTATACAAATGAATGCGTTTTGAATAACGGAAATAGGACATTTCAGGGACTTGGTAGGTTATCTAAAAAAATGTAAACCTCTACTGCAGGAGAGAAGAGATTTAAATTGAAAGAGGGATTCCTAGTTGAAGTGTAGTATTTCACTCAGCGCAAATGATCTTtgttacatgtttttttttagtgATGTTGATAATGAAATGCATTATTAATTTGATCTCTAGGTTTTGTACTGAACTCAATATACCTCAGTTAATTGGTGTTACGGGTATTTTTTTCCAGATGATGTTTGTCCTGATTAGTCAATGAGGTAGGACATTATTTCCCCAAGCAGGTCCTTTCCTCTAAGTTTTAGATTGGcctacaagtgtgtgtgtttaggtgtgtttTGGGGGAATGTTCAAGCCATCAGGAGCAAGTGTGTCATCTGTTGGTTAAAGGCGTGTCAATTCGTAAACAAGCCATGAGAATGGCCCAATGCCAGGTTATTGTTTCACTTCCCTGTTGACAGGATGAGACACTGTCTGACAATAGCACATATCAATGTTAATCTGCTCACATATCCTTGGCTAAGCCTCTTTCAAGTATAATTTATTGAAGGCATGATATTCATTTGTGTTTCTCTTTAGCTTTTGCTACTTGCCAGCAGTTTTGAATTTCAGTCAGTCTGTTAATCCTTTGGTTGTTTAGGATGTTTGTGTACAGTGGAACAGTAGAGGGCAGCACTTTCCAATGTATATTAGGCATTGTCTATATAATTTCCATTGTGCCACTGTGTATTAGTCTACATAACTGTTTAGTATGACAGTCCGTGAGGAAAATGAAAAGGTCATTGAAAAGGCCTCATCTTATGCCATTTGTATGGCATATTTTTTTATTGGTGATATCTTCAAATGTTTTTCCTAAACTTATTTGTGGTGATATTTGTTAGTTGGTATGTGAAACCAAATGGCGGTTCAACAAACCTCTAAGAAACCAATACATACTTTAGGTATTTATTATGTAATTACAACTTTTACAATGTACTTTCAAAGTAAATGTCAGGTAGATAGCATAACATTCCAATTGTAAATGACTTGTTTTGTATTTGAAGCTCTTTTTTTTTATCTCCAGACTCAATCTTGTATCTTTTCAGCACTTTTACATTAAATGTTATTTTACATTTCCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158548 lncRNA upstream 1618 36905465 ~ 36905799 (+) True G137772
TU158546 lncRNA upstream 3285 36903915 ~ 36904132 (+) True G137770
TU158485 lncRNA upstream 120310 36786726 ~ 36787107 (+) True G137712
TU158484 lncRNA upstream 120859 36786357 ~ 36786558 (+) True G137711
TU158475 lncRNA upstream 133907 36773150 ~ 36773510 (+) True G137702
TU158553 lncRNA downstream 33367 36948976 ~ 36949256 (+) True G137775
TU158556 lncRNA downstream 37293 36952902 ~ 36953127 (+) True G137778
TU158565 lncRNA downstream 52570 36968179 ~ 36968620 (+) True G137787
TU158569 lncRNA downstream 59784 36975393 ~ 36975598 (+) True G137791
TU159040 lncRNA downstream 153329 37068938 ~ 37069207 (+) True G138244
NM_001195162.1 mRNA upstream 8665 36874482 ~ 36898752 (+) True LOC100499584
XM_021561380.2 mRNA upstream 37133 36859708 ~ 36870284 (+) True cnr2
XM_036947491.1 mRNA upstream 67493 36835181 ~ 36839924 (+) False LOC110488899
XM_021561355.2 mRNA upstream 67493 36835541 ~ 36839924 (+) True LOC110488899
XM_021561342.2 mRNA upstream 80336 36825735 ~ 36827081 (+) True LOC110488894
XM_021561423.2 mRNA downstream 4035 36919644 ~ 36922258 (+) True LOC110488936
XM_021561449.2 mRNA downstream 11459 36927068 ~ 36946094 (+) True LOC110488952
XM_021561460.2 mRNA downstream 358713 37274322 ~ 37278025 (+) True LOC110488961
XM_021561486.2 mRNA downstream 432047 37347656 ~ 37396662 (+) False LOC110488976
XM_021561494.2 mRNA downstream 463929 37379538 ~ 37396662 (+) True LOC110488976
TU158176 other upstream 505446 36395286 ~ 36401971 (+) True LOC110488849
TU158178 other upstream 521561 36381892 ~ 36385856 (+) False LOC110488849
TU157787 other upstream 807140 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 869676 35982832 ~ 36037741 (+) True G136994
TU157486 other upstream 1051017 35855228 ~ 35856400 (+) False LOC100653444
TU159857 other downstream 861452 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 861452 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 861452 37777061 ~ 37824010 (+) False G139004
TU159862 other downstream 861452 37777061 ~ 37824010 (+) False G139004
TU159863 other downstream 861452 37777061 ~ 37824010 (+) True G139004

Expression Profile