RNA id: XM_021561423.2



Basic Information


Item Value
RNA id XM_021561423.2
length 2615
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC110488936
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36919644 ~ 36922258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTGGTAAAGATGGGGGATTGGAATTTCCTAGGGGGGATATTGGAGGAGGTGCATATCCACTCCACTATGGTGGGAAAAATCTGGCTCACCATTCTATTCATCTTCCGCATGCTGGTGTTGGGTGTGGCGGCCGAGGACGTGTGGAACGATGAGCAGGCCGACTTCATCTGCAACACGGAGCAGCCCGGGTGCCGGAACGTCTGCTACGACCTGGCTTTCCCCATCTCCCTCATCCGCTTCTGGGTCCTTCAGGTCATATTTGTCTCATCGCCCTCACTGGTGTACATGGGCCATGCTCTCTACCGCCTCCGAGCCCTGGAGAAGGAGCGGCAGAAAAAGAAGGTCCTGCTACGTCGCGAGCTAGAGCTGGTGGACGTGGACATGGTGGCTGCTCGGAAAACGATTGAGCGAGAGGTGAGGCAGCTGGAGCAAGGCAAGCTCAACAAGGCTCCGCTGTCGGGGTCCCTGCTGCGCACCTACGTGGCCCACATCATTACCCGCTCCGCCGTGGAGGTAGGCTTTATAACGGGCCAGTACATCCTCTATGGCTTCcagctctcccctctcttcaAGTGCGAGCGTGAGCCTTGTCCCAACGCGGTGGACTGCTTCGTTTCCCGGCCCACAGAGAAGAGTGTCTTCATGGTCTTTATGCAATGCATTGCTGTAGTCTCCCTCTTCCTAAACATCTTGGAGATCATGCACCTGGGCTACAAGAAGGTCAAGAAGGGCATCCTGGATTACTATCCACACCTGCAAGACGAGCTTGACGACTTCTACTCAAGCAAAACCAAGAAAGACTCCGTGGTGCATCAGACAGGCATTGCTTCCTCCGGCTGCAATCCCACCATGGCCTCCGCGCCCAGTGGCTACAACCTCCTACTGGAGCGGGCCCAGGAGGGTCACACCTACCCCCCCCTTATCAACCCCTCTGCCTTCCTCCCTGTTCAGGGTGAACTGGCTGGTAAACGGAGCGTGGAAGAACTCAAAGATGCTGCACATAGCCCGACGGAGCACAACTCCAACTCCAATAACACCAGCAGTGACAGCCGCTCACCGCCCTGCGACTCAGTGACCCCGCCAAAGCAGGAGGAGCCAGAGGAGTCTGCACACCTTCCCCCTCACAgcgaggaagagaagagggggagccCAGACTCTCCCAGGCGCCCAAGGGATGCATCTCATGCCTCCTCCTGCCCGACATTGCTAGTAGGCGCCGGAAGGAAAACATGGAGGGTCAACGCTCCCTCAAATTGTTCCACAGTGGTGGAGGGCAAAAGCTCAGACACAGATTCTTATGGGGGTGCTAAGGCCAGTGGTGGGTACCAAGCCCGGACTGCGTCGAAATCGGAACCCAAAATGCGTCCCTCCACCCCAGACTCACTGGGGGACTCAAGTTCAGGGTCACAGCACAGTCCGAGAACACCCTCTTCCAATCGCCGACCATCATCCACAAGCAACGCAAGTAGTAGGCGAGCTCCTACAGACTTACAAGTCTGAATGCTAAGAGTAAAACCTTATCCCTTGTCCCTCAGAcaaaaaaaatactttatttCAAACACAGGGATCAGAAGAACATGACATGAGTTGTGACATTGTGCGAACTGCTTCGGAGGGAAATCTGTTGCAGTAGTCCAGCAAAATGGATAGATGTGTTTTATAAGATGTCACCTCTGTTTCTGTTGATCTCTATGTGGTGGTTTATTTTTGTATTCACCAGCTTCAAAGCCTCCGTCATGCTTTGTGATGACGTAAGACACAGTAGATCAAACATTGGGTGTGGGGACTAGCTATTGGGAATATTGACCTGCTTTTAAATGTGTTGTGGCTAAGAGAGAAAAACACTGGAACAGTACAGATCACACAGCAGTGACACCGTTAATGCTTTCTGTAGGTTTCAGTTCATTTTAAACACCATTGTTTAGAGAGAAACCATGAAAATATGTCCTCATGGCAGCCAAATTCAGAATTTTGTTTctctaattggtcttttgaccaatcagatcagctctgaaaaatatctgatatGAAAAGATCTGATtgatcaaaagaccaattagtggaaaaagatcagaattgggctgcctgtctaaacgcagccaaaGTAGCTTTTGACCACTGAAAATAGAGTATGTAGACTAAATGATGTATATGTACATTGCATGAAAGAATGACCTAATTTCATATTTATAAAAGCATATATCTTGGTTTTTATTTTGCATTAACTACTGTATGTCCATACTATCATCGTAAAACCATGTATGACGGTTACAATGGCCCTCCACGTTCTTTTAGGCACAGCTTTTCTTTTAAGGGTTGTGGGGTATTTCAGTTTCTTATGCATTTCAAGTAACGCCAGCAGAGCCTCTGTGTGCACACAGTACAAAAGTGATATCATGAGGTAAGATTTCTATATTGTAACAAATATGTGAACGTGATTAAAAAGGAAAACACCCATTACGTTAATGTTTGTTTACTAGATACAAAACATTGGTGTACAGTAGGTTAAGTACACAAAGCAGAAAAGGGGGGTTTGCTTTTATGAGGGGAGACAGTCAAAGGACAAAAGCTATTATATTTCAATATATcaaatatacaaaaaaaaaagaaaaaa

Function


GO: NA

KEGG:

id description
K07618 GJA9; gap junction alpha-9 protein

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU158548 lncRNA upstream 13845 36905465 ~ 36905799 (+) True G137772
TU158546 lncRNA upstream 15512 36903915 ~ 36904132 (+) True G137770
TU158485 lncRNA upstream 132537 36786726 ~ 36787107 (+) True G137712
TU158484 lncRNA upstream 133086 36786357 ~ 36786558 (+) True G137711
TU158475 lncRNA upstream 146134 36773150 ~ 36773510 (+) True G137702
TU158553 lncRNA downstream 26718 36948976 ~ 36949256 (+) True G137775
TU158556 lncRNA downstream 30644 36952902 ~ 36953127 (+) True G137778
TU158565 lncRNA downstream 45921 36968179 ~ 36968620 (+) True G137787
TU158569 lncRNA downstream 53135 36975393 ~ 36975598 (+) True G137791
TU159040 lncRNA downstream 146680 37068938 ~ 37069207 (+) True G138244
XM_021561410.2 mRNA upstream 4035 36907263 ~ 36915609 (+) False LOC110488922
XM_036947524.1 mRNA upstream 4035 36907373 ~ 36915609 (+) False LOC110488922
XM_021561393.2 mRNA upstream 4035 36907417 ~ 36915609 (+) False LOC110488922
XM_021561401.2 mRNA upstream 4035 36907417 ~ 36915609 (+) False LOC110488922
XM_036947532.1 mRNA upstream 4035 36907417 ~ 36915609 (+) True LOC110488922
XM_021561449.2 mRNA downstream 4810 36927068 ~ 36946094 (+) True LOC110488952
XM_021561460.2 mRNA downstream 352064 37274322 ~ 37278025 (+) True LOC110488961
XM_021561486.2 mRNA downstream 425398 37347656 ~ 37396662 (+) False LOC110488976
XM_021561494.2 mRNA downstream 457280 37379538 ~ 37396662 (+) True LOC110488976
XM_021561508.2 mRNA downstream 650146 37572404 ~ 37603294 (+) True gnl2
TU158176 other upstream 517673 36395286 ~ 36401971 (+) True LOC110488849
TU158178 other upstream 533788 36381892 ~ 36385856 (+) False LOC110488849
TU157787 other upstream 819367 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 881903 35982832 ~ 36037741 (+) True G136994
TU157486 other upstream 1063244 35855228 ~ 35856400 (+) False LOC100653444
TU159857 other downstream 854803 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 854803 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 854803 37777061 ~ 37824010 (+) False G139004
TU159862 other downstream 854803 37777061 ~ 37824010 (+) False G139004
TU159863 other downstream 854803 37777061 ~ 37824010 (+) True G139004

Expression Profile