RNA id: XM_036947585.1


Basic Information

Item Value
RNA id XM_036947585.1
length 2308
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110501508
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37442359 ~ 37463839 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagacccagcggACAGAAGCAGCGGAAGGAGGGAAGCAGCAGGGaggagcagcaacagcagcagcggcGGCAGAGTGATCCACCTGTCACAGAGTGGAAGGGGCCCCCCGCCTGATCCGTCTGCCTGCAGGGGGGACCCCGCGTGGCCGGTCAGCACCAGGGACTATGCAGCTgggactggtggctctggcgatGGTCTTTCTCGGATCCATGGGTCACAGCGACAGCGGCCTCAAGCTCTCAAAGGGACGGAGGCAGAGACGGATTAGCACTGAGGGGCCACCATCTTGCTCAAATGGCTGTGAGCGATGTTCCGAATACAATGGCTGTATAAAATGTAAGCCCAAACTCTTCATTCTCCTGGAGCGCAACGACATCCGCCAGATAGGCGTGTGCCTCGCCTCGTGCCCACAGGGATACTTCGGCATGCGGACTCCCGATACCAACAGATGCATTCAATGTAAAATAGAGAATTGTGAGGAGTGTTTCAATCGAAATTTTTGCACAAAATGTAAGGAGGGCTTATATTCACACAGAGGGCGATGCTACCCCAGCTGCCCTGAAGGCCTCAGCACCACCAACGGGACCATGGAGTGTGTAGAATGTGAACTGGGCGAATGGAGCCCATGGGGTCCCTGTATGAAGAAGAACAAGACGTGTGGCTTTAAGAAAGGCACACAGACCAGAATGCAAGAGCTTCTTCATGCCTCCAGCACTGACACAGTCTCTGCGTCATCCCCCCGGCCATGTGCTccacagactgagagacagaagTGCACAGTGCAGAAGACACCATGTGGAAAAGGAGATGGGAATAAGAATAAGGGCGAGCGACGAGACCAGCAGAGGAGGCGAGACAAAGAAAACGTCAGAGGCCATGGCAAAGAGGGTGGCAAAGAGGGTGGCAAGAAGGGTGGcaaagagggaggaaaagaaggaagcagagagggggtcaaagagggaggaaaaggaggaagagagggtggcAAGGGAGGCGGCAGGAGGAAAAAGGGCCAAAACCAGGCCACCTCCGCGCCCAGCCTTACCCCTAGCACTGTAGCCTAGGCCTTACTCACGTTGGGACTTAGTGGGGACAAGGAGGGACAAAAACAAGGCGACTAGGCAACACCCACCTGCATTGGCCATTATtaagagacagacagtggacagaggaGACAATATCAAACTGATGAAGAAAAGGATTAATGCTGCTATGCATTCTAGAAGATGCTCTAAGAGAACTGGAGGATTGCTGCAATAAATGAGGATCAGGACTTGAGACTTATCAGACTTGGAGGGAAGAGGGTGAATGTGCAATGTGGAGGGTTCCACTGTAAGCCTTGCAGTAGGGTCAACATGTTTCATTTCACCGCTCCCAGGTTTATCATGGAGTTGGCAGATGGAGATCCCAGTGGCTGAACAGTGGAAGACACTGAATATGAATATGAGAGTTTCAAGATGGAGTCTTCACAATGATCAAGGATATCTACAATCCATTAGAATCCCTGATGTGCTTTTCAAAATCTATTTTTCATTGTTGACGACTCATGTTTTGTGAATGGTAGCAAGTAGATATTTCTAAGGAGATGTTGTTGTAAGTGATATAGAGAAAATGAACAGTATTAAAATTCTTTATTTTAATTATATTTTATGATTAAACAAAAGAAAGGCACTGGAACAAATGTGTGGTTTTGAAGGAAAACACATTTTAATGACATTTTTGGTTAGTAGAGAATCTACTCCAAAACAAACCAGCAACAATATAGAGAAGGTTTATACAGCTTTAGTTCAAATCCTGATCTGGTGTTAGACAAAGGTTACCCACATAATAGCTTAGTGCTTAATTTCAAATAGAATAATGTTTTgctatcatcagcataaaaagtTTAGGATTGAAaactgtgtgttgtgtatgtgtgttgtgagtatgtgtgcgtgtgtctgtgtgtgcattcgTGCCTGTCTGTAATGTTACAGAATTTCAGCAAAATGTTTTTGTGAAGTAGTGGTCACACAAGTGTATGTATATTTGTGTGGGTATATTGTATGTGTTTTTGCACATAagcttaatgtgtgtgtgtacgtatcaATCTGGTAGAATGGGAAAttttatataaactcagcaaaaaaatgtccctttttcaggaccctgtctttcaaagataattcgtaaaaatacaaataacttcacagatcttcattgtaaagggtttaaacacagtttcccatgcttgttcaatgaaccataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159531 lncRNA downstream 30274 37411227 ~ 37412085 (-) True G138713
TU159474 lncRNA downstream 110061 37332047 ~ 37332298 (-) True G138661
TU159472 lncRNA downstream 110791 37331037 ~ 37331568 (-) True G138659
TU159464 lncRNA downstream 127040 37315067 ~ 37315319 (-) True G138651
TU159459 lncRNA downstream 135571 37306567 ~ 37306788 (-) True G138646
TU159560 lncRNA upstream 147 37463986 ~ 37476683 (-) True LOC118939571
TU159578 lncRNA upstream 747 37464586 ~ 37465893 (-) True G138760
TU159599 lncRNA upstream 33573 37497412 ~ 37497701 (-) True G138780
TU159602 lncRNA upstream 37078 37500917 ~ 37501223 (-) True G138783
TU159779 lncRNA upstream 170538 37634377 ~ 37635070 (-) True G138940
XM_021561473.2 mRNA downstream 104752 37332647 ~ 37337607 (-) True LOC110488968
XR_002475036.2 mRNA downstream 169384 37264176 ~ 37272975 (-) True LOC110533765
XM_021561436.2 mRNA downstream 516477 36922102 ~ 36925882 (-) False LOC110488943
XM_021561369.2 mRNA downstream 592986 36844929 ~ 36849373 (-) False pnrc2
XR_005036564.1 mRNA downstream 901161 36487954 ~ 36541198 (-) True LOC118939565
XR_005036591.1 mRNA upstream 146 37463985 ~ 37476762 (-) False LOC118939571
XR_005036592.1 mRNA upstream 146 37463985 ~ 37476762 (-) False LOC118939571
XM_021561545.2 mRNA upstream 313565 37777404 ~ 37782182 (-) True LOC110489008
XM_036947701.1 mRNA upstream 327400 37791239 ~ 37796388 (-) True LOC118939581
XM_036947707.1 mRNA upstream 341170 37805009 ~ 37806792 (-) True LOC118939584
TU158919 other downstream 593014 36844933 ~ 36849345 (-) True pnrc2
TU158866 other downstream 613962 36825866 ~ 36828397 (-) False G138080
TU158620 other downstream 803354 36634193 ~ 36639005 (-) True G137839
TU158240 other downstream 1072031 36370004 ~ 36370328 (-) True G137479
TU157404 other downstream 1766654 35674431 ~ 35675705 (-) False drd2l
TU160127 other upstream 283602 37747441 ~ 37752958 (-) True G139231
TU160230 other upstream 582863 38046702 ~ 38048608 (-) False LOC110489105
TU160231 other upstream 582863 38046702 ~ 38048347 (-) False LOC110489105
TU160233 other upstream 582863 38046702 ~ 38048666 (-) False LOC110489105
TU160232 other upstream 582898 38046737 ~ 38048347 (-) True LOC110489105

Expression Profile