RNA id: XM_021561508.2


Basic Information

Item Value
RNA id XM_021561508.2
length 2915
RNA type mRNA
GC content 0.52
exon number 16
gene id gnl2
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37572404 ~ 37603294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaaaaaaatacacgtACTGTCGCTCTCTGATGACGTCTTTCCGGAATGTGCGGGACGCTGAGTTACAACACGTGGTTCGGGTACATAGAAGAAGTTGAAGATATCACTTTACATTTGGAGTGTTTTCGCTTATTGTTCATCGTCTACCTGTGTGTCAGATAACCTGCCAAAATGGTGAAGCCACGGTTCAAGGGGAAAAGCACGATAAACACCTCGGCGGCCAGCAGTAATCCTGACCGACCCAAGACTCCTGCAGGTTCAGGCAACAGCATGAGGGACCGAGCAACTGTCAGGCGTCTGAATATGTACAGACAAAAGCAGAGATGCAACAACCGAGGCCAGGTGATCAAGCGTTTGTCGTACCAGTCCACTGTTTCTGATGGGACACAGGCCAGAGTGGAGCCCAACATCAAATGGTTTGCAAACACTCGGGTGATCAAGCAGTCGTCTCTACAGAAGTTCCAGGATGAGATGGGTGCAGTGAAGAAGGACCCATACCGCGTGGTGATGAAACAGAGCAGGCTGCCCATGTCACTCCTGCACGACAGAGTCAAGGCACACAACTCTAAGGTACACATCCTGGACACCGAGGGCTTTGAGACCACGTTCGGGCCCAAGGCGCAGCGTAAACGACCCAGCCTGATGGTGGGAGACGTGAAGGACCTGGCAGAACAGGCCGAGGTCTCGGCACAGACCTACAGCGCTGAGAAGGACCGCGACCTGGTCACCGAGGACGACGGGGTCAGAGAGGAAGCTCGTGAGGAGATCTTCAAGAAGGGCCAGTCGAAGAGGATTTGGGGAGAACTCTACAAGGTGATAGACTCGTCAGACGTCATCATACAGGTGCTGGATGCCCGTGACCCCATGGGTACGCGCTCGCAGAGCATCGAGACCTACATGAGGAAGGAGAAGCCTTGGAAGCACCTGATCTTCGTGCTCAACAAGTGCGACCTCATCCCCACCTGGGTCACGAAACGCTGGGTAGCCGTGCTCTCCGCAGAGTACCCCACTCTGGCCTTCCATGCCAGCCTCACCAACTCGTTCGGCAAGGGCTCCCTCATCCAACTCCTCAGGCAGTTTGGCAAGCTCCACACAGACAAGAAACAGATCAGCGTTGGATTCATTGGCTACCCCAACGTGGGAAAGAGCTCTGTCATCAACACTCTACGCTCCAAGAAGGTCTGCAACGTGGCACCCCTCGCCGGTGAGACTAAGGTGTGGCAGTACATCACTCTGATGCGACGCATTTTCCTCATCGACTGCCCCGGTGTCGTTTACCCCTCTGAAGATAGCGAGAGCGACATCGTGTTGAAAGGAGTGGTGCAAGTGGAGAAGATCCGTAACCCGGAGGAGCATATCCCGGCGGTGCTAGAGCGGGCCAAACCAGAGTACATCCAGAAGACGTACCGCATCCCCACCTGGAGCTCCCCAGAAGACTTCCTGGAGAAACTGGCGATGCGCATGGGCAAACTCCTCAAGGGGGGTGAGCCAGACCTTACCTGTGTCTCCAAAATGGTGCTGAACGACTGGCAGAGAGGACGCATCCCCTTCTTCGTAAAACCCCCTGGCTGTGAGGAAGAGCATGAGGGTAAGGATAAACTGCCAGTGGAGGGGGCACCAGAAGCTACAGAGTGTGTACAGGAAGAAGGAGCAACAGAGGAGCAGTGCAAGGAGATGGTGGCTGCAGTGTCGGCCGAGCAGGAGGCCCAGCaacagcagaaacacaaacatgAGCAGGTGCAGAAGATCCTCTCCAATGTCCGGCAGAATTTCGGCAAGATCAACGTGGCGCCCGAGTTCAACGACGAAGACCTGGCACCCGTGCAGACAGACGACCTCGCTTTCTCTGACCTGTCCGGCTCGGACGTGGAGAAGGATAGCGAGGAAGAGGAAAATGGAGATGAAGAgaagggggatggggagacagcaGCCGGTGACGCTGAGGCCGCTGCCACCACCCCAGCCGGTCAGCCTGCCAAGGTGGAGGAAAAAAAGAGTTCTCGTGAGACGATCCGCGAGCTGGACGGGAAGATTGCGAAGTACAAGCAGTTCCTGGACCGGGCCAGACTCAAGCGCTTCTCCGCCATCCGGATTCCGAAGGCACTTTCTGACAAAGTGCTCACAGACATGAAAGAGAAGCAGGCGGGGAATAACCCACAACCTAAAGCCGTAATACAGGTCGGCAAGAAGAGGAAAACCGAGGCGGCAGAAGAGCCCACGCGTCCACACAGAAGTTTAACATCCAAGCAGAGGAGAGCAGCGGATCGTGCTCAGAAGGTGAAGAAAGTTGGAACGCGCTATTACGAAACACACAACGtcaagaacaagaacaagaacagAAAGATGCCTACGGCGCCCAGCGAGGGCAAGAAAGCCAAGAGATCGAAGCGCTAGTCTGGGGTTCGAGACACCAAATTGGGTCATTTctaataaatatttattttaatgaCCCTGTCATTGTAATGACTTGTTTTAAGTTGTCTTGGTACCTACCCTTCTTGATGGAAAGTGATTTGGGTTAGGTTGCATTGAGTGAATTAGATTTTGATGAACCTAATCGCTTGACGCCTTAACCTAATCCTGAGTGACCTTCAACGAAGTGACAACGATCAATGTTGCATCAAACTATTACTTAAACTCATAAGGAGTTTCACTGCGAAGTGAAAGGATGAGTCTGTCATCCAAAAAAAGTACATTTGTACTGCATAGCCTGGATGCCAGTCTGTTTTCATTATTTTGCTAACTCCTCATGGAACTGTCAAATTTGGCATGAcaattccataaggagttggcTAGAGAGCAGAAACACACTGGCACCCAGGTTATGTACAGcacttttggaaaaaaaacagTGACACAATTTTTCTCCAAATATACATGTCATACCATAAAataaagaatatgaacaaatta

Function

GO:

id name namespace
GO:0005730 nucleolus cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14537 NUG2, GNL2; nuclear GTP-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159453 lncRNA upstream 40291 37531419 ~ 37532113 (+) True G138640
TU159444 lncRNA upstream 53550 37518494 ~ 37518854 (+) True G138631
TU159443 lncRNA upstream 59659 37512539 ~ 37512745 (+) True G138630
TU159435 lncRNA upstream 73445 37498618 ~ 37498959 (+) True G138622
TU159434 lncRNA upstream 74764 37497408 ~ 37497640 (+) True G138621
TU159831 lncRNA downstream 89688 37692982 ~ 37693181 (+) True G138991
TU159908 lncRNA downstream 169696 37772990 ~ 37773504 (+) True G139038
TU159910 lncRNA downstream 173297 37776591 ~ 37776949 (+) True G139040
TU159990 lncRNA downstream 341608 37944902 ~ 37945164 (+) True G139102
TU159991 lncRNA downstream 342050 37945344 ~ 37945605 (+) True G139103
XM_021561486.2 mRNA upstream 175742 37347656 ~ 37396662 (+) False LOC110488976
XM_021561494.2 mRNA upstream 175742 37379538 ~ 37396662 (+) True LOC110488976
XM_021561460.2 mRNA upstream 294379 37274322 ~ 37278025 (+) True LOC110488961
XM_021561449.2 mRNA upstream 626310 36927068 ~ 36946094 (+) True LOC110488952
XM_021561423.2 mRNA upstream 650146 36919644 ~ 36922258 (+) True LOC110488936
XM_021561519.2 mRNA downstream 3799 37607093 ~ 37621875 (+) True LOC110488991
XM_021561532.2 mRNA downstream 24858 37628152 ~ 37664293 (+) True LOC110489000
XM_036947634.1 mRNA downstream 95921 37699215 ~ 37763715 (+) False LOC110501519
XM_036947642.1 mRNA downstream 95921 37699215 ~ 37763715 (+) False LOC110501519
XM_036947647.1 mRNA downstream 95921 37699215 ~ 37763715 (+) False LOC110501519
TU158176 other upstream 1170433 36395286 ~ 36401971 (+) True LOC110488849
TU158178 other upstream 1186548 36381892 ~ 36385856 (+) False LOC110488849
TU157787 other upstream 1472127 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 1534663 35982832 ~ 36037741 (+) True G136994
TU157486 other upstream 1716004 35855228 ~ 35856400 (+) False LOC100653444
TU159857 other downstream 173767 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 173767 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 173767 37777061 ~ 37824010 (+) False G139004
TU159862 other downstream 173767 37777061 ~ 37824010 (+) False G139004
TU159863 other downstream 173767 37777061 ~ 37824010 (+) True G139004

Expression Profile