RNA id: XM_036947634.1


Basic Information

Item Value
RNA id XM_036947634.1
length 3949
RNA type mRNA
GC content 0.53
exon number 19
gene id LOC110501519
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37699215 ~ 37763715 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCGTAAAATGAGCATACCGTCAGCTGTTGTGTGGGTTTAACTTATTTCCCCATTCTCCTCCCCCTCAATATATTTTTGATCCTAAGCAATTTGTGAACGTTGATGGTATTGCAGCCCAAGTAGTTTCCAACCAAACACATTGTTGCTCTGTGTGTGGCACcgcttttatttttttgaaagaGCGCTACCTACCCGGTGCGTTTCCAGCGTTTTCCATTTGGAAATAGGGGTAGACTGCGCGCGCTGGTGAACAAGTAGAGTGACTCAACCAAGTTTCCCTTCTGTCTGAGGAATGAGTATACATACGGTCGGGAGAGGACGAGCCGAAAAGCGCACGATTGAATGAATAAAATGGAAAGCCAAGACCTCGACACCGATTTGGTGGGAAATGTGTTGCCCGAAGGTACAACATCTCCCCACCCGGCTCAGGACCCAAACCTCACAAAGCAAGACACTGAGGGGTTGACAAGCCACCCTAAAACAGGCCCAGCCCAGATAATGGAAACCTACACGAAAAAAGACAAAGAAAGGAGAGTGGGGACCCCCACGAAACTGGACGTCATCCCGAAGTCACCTGCTACACCGACATCGCCCAGGCCTGGCTCAAGTTCTAGCCCCAAACGTAATAAAGACGCAGTGAAGTCAGAGGACAGACAGAAGCTGGCcaaggagcggagagaggagaaggCCAAATATCTGGACAAGCTCGGCCAGATACAAGCGGCGAAGAAGTCCCAATGGctggagaaagaggaaaaggcCCGGCAGCTGAGGGAGAGCCAGCTGGACGAGCGGCGCAGGAAGCTGGAGGAGCAGCGGATCAAGACAGAGAAACGTCGCACTGCCCTGGAGGAGAGGCAGAAACAAAAACTAGAGAAGAACAAGGAGCGGTATGAGGCTGCCCTCCAGCGGTCCGCTAAGAAGACCTGGGCTGAGATCCGTCAGCAGAGATTGTCCTGGGCAGGAGGCCTCAGCCAGAACTCCAGCCAGAGAGAAAGCAGATGCTCCATGTCGGCGGTCAACCTGCCCAAACACGTGGACTCGGTTATAAACAAGAGACTCTCCAAGTCCTCCGCCACCCTTTGGAATTCCCCCAACAGAACAGCCCGTAGCCTCCAGCTGAGCCCGTGGGAGAGCAGCATTGTGGACCGACTGATGACGCCCACCCTGTCCTTTCTGGCCCGTAGTCGCAGCGTCGCCAGCGTGCTCAGCAACGGTAAAGACCagTCGCCCCTATGCCCTCGTTCGGCCTCGGCCAGCCCGCTGACGCTGTGTGCCCACCGGCCTCACCACCGCTGCTCCGACCGCTGGAGGGTGACGTCCAGCACGCCCGACATCACCCAGCGCCGACGCGACTCCACGCCGATAgagaagaaaaagaaagagaagaaggacAAGGAGCGGGAGAACGAGAAGGAGAAGAGTGCTCTCAGCAAAGTCAAGGTGCTGAAGAAGAGACAGTCCTTACCCAGTATGAGACACAAACCGGACCCCAGTCCTAGTCTCTTATCCAGACAGCGGGCTGCCTCACCTGCCACTACTCCTAGAGCAAgaccttcctcctcttctcctagcCCTGCTGCCTCCCCCAAACCTCCCTCCTCAGCCCGGGCTAGTCCCTCCACCCCCAAGGCCCGGCCCAAGAGGGCTAGGACCCCGGCCCGGGTGGACCACGGGCGCACCTCCTCCCCCGTACCCCTGGAGAGGGCCAGGGAGACCCGCGGCCGTAGGTCAGCCACACCCGAGGAGCCCAAAGGCAAGAGCTCCCCCGTTCCTTCAATCGTGGTATCCTCTGCTCTGGCCACGCCCCCTTCGCTGAGTACACCAAACACGATGGCCACCACCACTCCCTCTGAGGTCCCTCCTTCTGCCCAATCAACCCCCAGTGTCCCTGCATcgtccccagccccagcctcctcGTCAGCCAAGCCCATGGCGGGCACCAACAACCCAGAGGAGGCCGCCCGGATCCTGGCCGAGAAGAGGAGGCAGGCCCGGGAGCAGAGGGAGCGGGAGGAGCAGGAGAAACGcgagctggaggagagagagaaGGTCCTGCGAGAGGAGCGTAAGCTGCGGGAGGCGGAGGAGAGCAAGCGCAGAGAGGAGGAAGCGCGCCTCATGGCTGAGGAGCAGCGCCTGAGAGACGAGGCCCAGCGTGTGGATGAGGAGAAGGAGGCGAAGGAGAGAGCCAGGGCAGAGCAGGAGGAGAATGAGCGCCTACAGAAACAGagagaggaggctgaggctAAGGCCAAGGAGGAGGCCGAGaaacagcgtctggacagagagaaacacttcctgaaggaggagcaggagaggctGGAGAGGAAGAAGCGTCTCGAGCAGATCATGAAGAGGACACGCAAGACAGACGGAGGGGAAAAGaaagACACCAAGTCCCCACCTCCCTCCCAAGTCAATGGCAAAGAGGCCAAGAGCAACAAAGCCTCTGCTGACTACCAGCCAAGCCCAGAGATCAACAAGAATACAGAGAACGACCATAGTGATTTGAGAGACAGCTCCACGGTCCATGTGGTCAACGGTGTCCAGCCTGCCAGACACGAGAATGGCCTGTCTAGCAAGGGAAACACCGCACACTTTGAGGAGGTCATCCAGCTAGCCAATCAAGGCAACAGCAGCAACGGGGGGAGGGAGAAATCAGAGAGTGACATGCCCATTGAACCAATCCTGGCCTTTGAAAGTGATGAGCCCTTCCTGAAAAAAGTGGGCACCATGAAGCCTCAACATGTCGCagAGGTCCTGTGAGGTGTGCCACTCATAAAGGCGATTCTTAGGCCCCCCCTTCCCGCACCTTCCCGAATCCAGCCTCCACTCGTACGGGTAGAGGGCCCCCCTCTTCCCGAAGGTGCACATCCCCAATGACCTGTGCCAAACCAATCACAGACTGCTTTCTAGGCCCAAAAAAACAAGGGCAGAAGAAAAGGgcagaagaagatgaagaagaagcaACAACTCTGCATTCTGCAAAAAAGACACAAgcaaaacacaaaaacaggataTGACGTCATCGCCACCCGACAGGGTGCATCAGTGTTACCATTTGTAGATGGTAGAAGATAACGCAGCATCAATTCTTCCACAGCAGTATCATCCATGGTAGATTTCAGTAGCCCTGGGGgtaaaaaaatacacatttgacACAAATGAGTAATTGTTGATATTATTGTGCTGACGAGTTGAAAGAGAAGTGAGTTGGCTTTTTGTTTCTAATGTTTAGTTTATTTAAGAGAAATGTAAGGACTGGGTACAGTTGTATGTGAAtaatgtaaatgaaaacttgagaGTTGGACTAAATGAGGGAGGGGTCTGTGGAATAAATTGTGTGTGAATTTATGAAAGGAATCCCAATGTTTACTTAACTCCTGCCTTTCAAGGTTTTCCCAGTAACTAATATGTATTGGAAACGTAATGATATGGTCTCTAtaaacatttttgtaaatgttcTGTAAATGGAGCTACACTGCAAATAGAATGTCTCCAAAATACTGAAGATGACGTTTGACAACGTTTTGACAATGTAAGAATGACATTGTTGCAGCACAGCGTTAGTTGTCTCCAAGGAGCGCTATAGAAATGAACAAGGGATCAGTTGAACGAAAAACAGCACACACGTGGGTACTCCAGATTCAGGATTGGTAAGCCTTGGGTCAAATCAGTGATCCATTCAGTTTAATCAGTGTTGAAACAGAATGTACACAAGGGCATCCCATCCCACCATTTTAAAAATCAGTGCAGTTTAGTTTTTTTTCTCAACCTGAGCAAGAAGCATGATATGCTGCCACCTCCCATCGAAATTCCACAGATTCTAATGCGTTTGAAAATGAAATGCTGGTGTGTGTATATGCTATaaatacattttgttgtgtaTTGAAGGGTCAGAGGGAGTATCGGGAGTCTTATTAAAGAGAACATTGTTGTCCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159831 lncRNA upstream 6034 37692982 ~ 37693181 (+) True G138991
TU159626 lncRNA upstream 108658 37535056 ~ 37590557 (+) True G138805
TU159453 lncRNA upstream 167102 37531419 ~ 37532113 (+) True G138640
TU159444 lncRNA upstream 180361 37518494 ~ 37518854 (+) True G138631
TU159443 lncRNA upstream 186470 37512539 ~ 37512745 (+) True G138630
TU159908 lncRNA downstream 9275 37772990 ~ 37773504 (+) True G139038
TU159910 lncRNA downstream 12876 37776591 ~ 37776949 (+) True G139040
TU159990 lncRNA downstream 181187 37944902 ~ 37945164 (+) True G139102
TU159991 lncRNA downstream 181629 37945344 ~ 37945605 (+) True G139103
TU160029 lncRNA downstream 239351 38003066 ~ 38007585 (+) True G139139
XM_021561532.2 mRNA upstream 34922 37628152 ~ 37664293 (+) True LOC110489000
XM_021561519.2 mRNA upstream 77340 37607093 ~ 37621875 (+) True LOC110488991
XM_021561508.2 mRNA upstream 95921 37572404 ~ 37603294 (+) True gnl2
XM_021561486.2 mRNA upstream 302553 37347656 ~ 37396662 (+) False LOC110488976
XM_021561494.2 mRNA upstream 302553 37379538 ~ 37396662 (+) True LOC110488976
XM_021561609.2 mRNA downstream 99486 37863201 ~ 37888589 (+) False LOC110489035
XM_021561587.2 mRNA downstream 99488 37863203 ~ 37890510 (+) False LOC110489035
XM_021561592.2 mRNA downstream 99489 37863204 ~ 37890510 (+) False LOC110489035
XM_021561600.2 mRNA downstream 114937 37878652 ~ 37890510 (+) True LOC110489035
XM_021561628.2 mRNA downstream 128236 37891951 ~ 37911330 (+) False sh3d21
TU158176 other upstream 1297244 36395286 ~ 36401971 (+) True LOC110488849
TU158178 other upstream 1313359 36381892 ~ 36385856 (+) False LOC110488849
TU157787 other upstream 1598938 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 1661474 35982832 ~ 36037741 (+) True G136994
TU157486 other upstream 1842815 35855228 ~ 35856400 (+) False LOC100653444
TU159857 other downstream 13346 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 13346 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 13346 37777061 ~ 37824010 (+) False G139004
TU159862 other downstream 13346 37777061 ~ 37824010 (+) False G139004
TU159863 other downstream 13346 37777061 ~ 37824010 (+) True G139004

Expression Profile