RNA id: XM_021561587.2


Basic Information

Item Value
RNA id XM_021561587.2
length 5183
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110489035
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37863201 ~ 37890510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGAGCAGCACTCACACCCCCTGCTGCGCTGCGAAGGAAGATTCTACTGTAGCCAGTACTATAGCTTCGTATTGTATGCGTTCTCTGATGATTTCTCCACTTTGAATTTATTCCTCTTGAGCGCACAGCGCAGTGTCGCATTACAACTGCTGTAGTTATTTAATGTGACATGAATACAAAACGGACCTGATAAAAGGCTTGTTGAACGAGCTGATAAACGTCATTCCCGCACATGTTTCGGTCAATAAGATGCTTGACACACAGTAGCCAAAGTTAGCTCAACTGGCCTGTTTGTTCGGACTGCAACCTATCATCGAAAATGACTTGGTTGACAGTGTGACAGCAACGGATCCTCCGCCGACTGTCAACCAAGAAGCTGTACGCCCCGGACCCGCCAGAGGAGCgtgaaaaaaacagaaatatcggAGGCTGTTGTCTCAAAGAGGTAGCTTGCAGTGATGTCCAAGGCAATGAAGTCAGCCTCTAAGTCTCGGTCCCACTCCCGCTCCAGAAGCAGCTCACGATCCAGATCTCGGAAGCATCGCTACAGCTCTAGGTCCCGCACTCGCTCGCGCTCCAGATCTCATTCTCCATCCCACAATAACCGAGAGCGGAACTACCCAAGGGAGTACCAGAATAATAACCGTGAGTTCCGGGGCTACAACCGAGGCTTCCGGAGGCCCTACTACTTCAGAGGCCGAGGGCGTGGCTACTTCCCACGGGGACGCTTCCAGAGGGGTGGTGGAGGCGGCTATAACAACTACCGCCCCAATAACTGGCAGAACTACAGGCAGCACCCCCAACAGCAGCACccccaacagcagcagcagcaacaacaacagcagcagcaacaacccCACAGCCCGAGACGGGGACGATCCCGTACCCCTAAAAAGCGCTCTGGTAGCCCTCATTCCCACAGCCACTCCAAGTACTCGGACCGCTCTTCCTCGCTCCGATCCCGGCGCTCCCACCACTCCTCTTcctcacattcctcctctcccacaCGCAGGTCGGGCTCTGGGTCGGCTACGCAGAACTCTAAGGATGTCAAGGAGGAGCGTTCTGCCTCCAAGGAGGTCCAGAAGaaaggagtaggaggaggaggacatggTGAGCCTGTGGAGATCACAGGGGGGTCTGCAGGGCCTGATGGGGGCGCCAGTGGGGACAGGCCCAAGGCTAACTGGCAGGGCGTGACGGATCACAGCAACAGCACCAGCCCTAAGGGGTCAAGTCCTCAGGTGCGCTCAGCTGTTATCATTGGTCAGGGCGCTCCAGCTTCGACCCTGTCTAGTCCCTCTCCTAAAAGCACTAATGCTAATGGCCCCAAGTACAATGGTGCCCCCTCATGGCAGATACAGACGGTGGGCAGTTCACCTTCCACCAAAAGCCCTTCTCAGAAAAGCCCCACACCTGTGTTCTCTGGCTTTGGCTTCTTCTCTAAAGACGACAACCTGGCAGGAGATAAAGCTATCTCTTCAGTGTTCAAAAGGTTCTTGGAAGAGCACAATCATAAGAAAACGCAGTCCAGTTGGGAGAATGGCAGAGAGATGAAAACCAATGGTGGGGATGTGGAGCGGGAGAAAGGGAATGGCATGAAGGCCTCTGGGGGCATCTTTGACAGAGAGCCCGACAAAGGGGAGAATGAGAAGTACAAGGAAGACTTTGACGATGAGGGGAAGGTGTCGTTGAACCGCTTCTTGAAAGCCTCCCCTTTCTTTTCCTGCGATGGCGAGGAAGAGGAGTTGATACCCAAGCCCCATCCCAAGGTGCTCCACAAAGAGCATGACCGGGAGGACGATGAGTCGCCCAAGCCAAAGAGCAAAGTCACCCTCTCGGCCCGCGAGCTATTTGAGGAGCGCTTCGGCAAGTGGGAGGACCTGGCCTACTTGCAGGTGGCTGCCAAAGATGATGATCTTGATGCCATGGCGGAGGAGATTTACCGCAGCCGGAAGCAGGAGAAGGCTGCGGCCATAGCTGCGGCCCTGGCCAAGAGAGAGGCCATAGCGGGCATGCTCAGAGGCTTCTCCCCGGAGAACGTCAGCAAAGACAGGAGGAAAGAGAAAGCTGCCTCCAGCCAGTCCCCCACACCCGCACCACGGAGGAACTCTGACCGAGAGATGTTCATGGTCAGGGGGGAGGACTCTCCCCCAAGGGCCTCAGAGAAAAGAGGAGCGGAGTTCAGTGTCAGAATGGATTCTCTCAGAGATGACGTGGCAAGCTCCTCTGGTGTTATGGTTGGTGAGCGACGATTATCACGGGATCTTGTGCATCCTACTAAAAAGGAGCAGGAGTTTCGCTCTTTCTTCCAGCACATTCAGGCCACACAATTACAAAGGAGTCCCTCAGAGCTGTTTGCACAGCACATTGTCACCATTGTCCACTACATAAAAGCACAGCACTTTCCATCCAACGGAATTACTCTAAATGAGCGATTTGCCATGTACCAAAGAAGAGCTGCACAAAAGGAAATGATGAAGCCAAGAAAGAGCCCAGAGATACACAGGATAATTGATGTTTCTCTCAGTGCTTTAAAGAAACACTCTCACCTGTTTGAGGGGATGAAAAGCTCCGGGGATGGCAGTTACAAGGACGAAGGTAAAAAAATGAAGGGTGACTCAATGGACCTTCGTCTGGATATTGAGCGCCGTAAAAAATATTCCACCCGGGAGAGAGATTATAAACAGGATGGGGGGAGAGATTCAGGAGACTCCCCAGAGGCTAGCATGGAGAGGTCCGCTGAGAAATCCTCCAAGCACCACAAGAAGTCCAACTCTTCCTCCAGGAGAAACAAGAAGAAGCAATCTCGCTCccgctcctcctcttcatctgccGAATCTCACAGGGGAGGAGACTATCCCCACAAGGAGCCTGAGCTCAAAGACGAGGGCTTTAACAAAGCCAGGCTGGGGCCTCGGGGGGACTATGGCAGCCCCATGGAGAGGGGACGAGGACGCGGAGGCTTTCAATTTAGAATAAGAGGAAGGGGCTGGAACAGGGGAAATTATCAGGAAAACAATGCCAACGGTAATCCCCCTAACATGGGCATACCAGTTCACCCCAAGAATGAGGACTGGGACCCGGAGTACACCCCCAAGAGCCGAAAATACTACTTGCATGATGACAGGGAGGGCGAGAGGAAGTGGGTGGACAACCGAGGACGGGGGAACTTCCTGCGTGGCAGCGGGGGCCGTTTCATTATCCGGAAGGCCAGCGTTGGCCCACCCAACAAcccaaccaacaacaacaacagcagcccCAAGTGGACACATGACAAGTTCCAGCTCaacaggggggaggaggagggcgaGCCCCAGGAGGAGGACACGGAGCAggaccacaaagaccaggagaaGTCTGAAGACATGGAAAACACTGAGCAGTGAGGGAGCTCAGGGAGAGTGAAACATTGTACCAACACAGTGGCAATATTCTATTGTCTCAAGTCATCTGGGTCGTGTTCAAATGGatgaaaacagactgaaacaggggaGGAaaggactacctggacttgtccagtAACGAACACTGTCCAATAAGAAACTACCTGGACTTATCCAATAAGAAAAGACCCTGCTCTCAGCCTTTATCCATCAAATGGCCGGACTTTGGAGAGAGTTGCCcgtgcacaaatacacacattagGAATCAATCAGGACTCTCTTTGACACAATATCTTTACGCAACATTATGTTATACTTTTGTCAGGGTATAGCTAACTTGTGTTTTATCTGCTTATAGTAGAAACACTGTTAGACAGTGAACTGCTGTGTTGGAATAGGAAATATACATAACCAACCTCTGCACTTGATAGGTTAGCACTATGAACAGTACATTGTGGGGTGTTATGCCTCTTAGTACAGGGCTGATGCAACATTGCATAACACTTTGTTTATATCTTGATGCGAGAATGTCACACCTTTTTGCAGAGCATGACAAGAGGATATTTTTGTGCCATAGATTTGTTCAAATATGTCAGACACATATTTATCTAATTAAATTACGTTTGAGGCCAAACCGATTAATACTATACTAGAAgataaacattttatttatttattatatagtagtgataAATCATACACtattatacagtagatatatttttAGACTAGTTTAGCCATCAACCTCAGAAAATGCAGTATGCTGTTTGAGGTTTCAACAATGTAACCTACGGATTCAAATATGTAACCTGCATGTTCAACTATGTGACATACGTAGTTGTTTTCAAATACGTAGCGTTCAACTACGTAACATTCAACTTTGTAGCCTGGTAGAATCTAAAAACATGCTAAAGTACAGCTAGAGGCAATCAAATCCCCTTTTTACATGACAACTGGGCCAGTTTCTAATGGTCTATATGGTTTAGATCGTTTGGTTTATAGTGGTCTTGCTAGTCCAGCATCTTGCAAATGACCCCTCTGACAATGGGACCAAATCGGGTCAAAGGTTATATTCTACAGACCTGCATTGTGGAGTGAAACAAGAGGctcagcagtggtggaaaaagtacccaatcgtcatacttgagtaaaagtaaagataccttaatagaaaatgactcaagtaaaagttgaGTCTCCCAGAAAAATTCTAAAAAGTAAAGTACTACCTAAATACTTTACACCGCTGGCAAACAGAGACTGTCAAGTAAAATGAATTGGCATACCCTGTCTGCAAAGTCACAATAGGCTACCTGGATGTTTGTTATCTTGTCTAGTTTGTTGAGAATCCTGTATTGGATTGTTATATCTTGTACATTTCAGAACTGTTAACTTGGTCTTGGGTTGGGTGTGTACTAATACTGTCTCGCCATTGGAAGTCTGTGCCTCAGAAATACCTGTGCAAAGTCATTCAACTTTTGATTAGACGACACAATTTGTAATCATTTGTAGTAATTAATGCTTCCTTTGTATATTAAGAAAAATTGGTGATTGGTTAGATCATGATGTGATAGGTTTTCTTCATTGAATGGGGACTTTCCCCCTTGTGTAACGTCTGTGTTAAGTTTGGATTGCAGAGTAGACTGTGTGGGGTGCACTCTTTAATGTGCATGATAAACGTTGTGGTTGACACATTCATGTTCAATTCTATGTGGTTGGGGGCAATAACTTTTTTAAATGGTTCCTGTAGCCAATGTTTTTCAGATGTAAATTAAAAAGAACTTTGGTTAATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159910 lncRNA upstream 86254 37776591 ~ 37776949 (+) True G139040
TU159908 lncRNA upstream 89699 37772990 ~ 37773504 (+) True G139038
TU159831 lncRNA upstream 170022 37692982 ~ 37693181 (+) True G138991
TU159626 lncRNA upstream 272646 37535056 ~ 37590557 (+) True G138805
TU159453 lncRNA upstream 331090 37531419 ~ 37532113 (+) True G138640
TU159990 lncRNA downstream 54392 37944902 ~ 37945164 (+) True G139102
TU159991 lncRNA downstream 54834 37945344 ~ 37945605 (+) True G139103
TU160029 lncRNA downstream 112556 38003066 ~ 38007585 (+) True G139139
TU160059 lncRNA downstream 145965 38036475 ~ 38036812 (+) True G139167
TU160070 lncRNA downstream 158428 38048938 ~ 38049391 (+) True G139177
XM_036947668.1 mRNA upstream 99488 37699215 ~ 37763715 (+) False LOC110501519
XM_021561628.2 mRNA downstream 1441 37891951 ~ 37911330 (+) False sh3d21
XM_021561620.2 mRNA downstream 1443 37891953 ~ 37911330 (+) True sh3d21
XM_021561732.2 mRNA downstream 827782 38718292 ~ 38734398 (+) False LOC110489135
XM_036947840.1 mRNA downstream 830761 38721271 ~ 38734398 (+) False LOC110489135
XM_036947848.1 mRNA downstream 830761 38721271 ~ 38734398 (+) True LOC110489135
TU159857 other upstream 39193 37777061 ~ 37824010 (+) False G139004
TU159966 other downstream 29225 37919735 ~ 37922070 (+) False G139089
TU159964 other downstream 29593 37920103 ~ 37922184 (+) False G139089
TU159962 other downstream 29838 37920348 ~ 37922583 (+) False G139089
TU159972 other downstream 29838 37920348 ~ 37922070 (+) False G139089
TU159974 other downstream 29881 37920391 ~ 37922070 (+) False G139089

Expression Profile