RNA id: XM_021561620.2


Basic Information

Item Value
RNA id XM_021561620.2
length 3181
RNA type mRNA
GC content 0.44
exon number 17
gene id sh3d21
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37891951 ~ 37911330 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGGAAGGAGGGCCCTGGCTAGCCATATATAGCTTTGCTTCTTGGGCAATACTTTCTTTCAGTTCTCCTTCTGTAGCATgaggtgtctgtctgtcctctgaaGAGGATTTATTTACATAAACGTCTAGAAGAGAGAGTAAAGCTTTCTAAGAAGTCATGGAGGTGCTGGTGCTGATAGCCTTTGAGGGCACAATGGGTGATGAGATGACGGTGCAGGTGGGAGACGTAGTGACGAGTGTCTCCAATGCCAGCGAGGAGGGCTGGCTGGAGGGGGAACTGAGGGGCAAGAGGGGCATCTTCCCCTCTAACTTCGTCAAGGAGGTGCCAGTGTATTTGATAGGTGACAGCAAGAGGGAACCAAGAAGCATACGTAAATCAAGGATGATTAAACAAACAAGGAAGTGTGAGGTGGCCTTTGCCTACAGTCCCTTGAATGAGGACGAGCTGGAGCTGGTTGTCGGGGAGACCATTGAGATCCTCAGAGAGATTGAAGATGGGTGGTGGATGGGAATGAAAAGTGGTAAAGTGGGAGCGTTTCCATCAAACTTCACCAAAGAGATATTTGTCTCTCCAAAAGACGTCAAGCATAACGAGAGCAAAACCAGACCCAAACTCTCAGATACAATGTTTAGTAAAGAGacaAAGCTACCTCAGAGGACGAGTGTTaggaacaaaacaaaaaatgTGAAGGAATGTTGTCAAGTCATGTTCGACTATCCAGCCTTGACCGAGGATGAGTTAAATCTAAAGAAGGGAGACATTGTTACAATCATCACCAAGGAAACAGAGGACGAGGGctggtgggagggagagatgaacggACGCAGAGGTTTTTTCCCCGACAACTTTGTCATGGTGATACCGACGACAGATGGTCTCCAATCTGGGAGCACCAGCCAACCACCTGCGCGCCGTGGCACGGAAAGACGCTCAGTCAAGGCAGAGGGTTCAGCGATGGAGAAGAGCAGCCCTGCAAAAGCAAAagATGAGAAACCAGAGAGTAAAGACCTGAGAAGCAATCCCCCAACCAAAGTTAAGCTCCCTGCACCAAGTAGACCTGCACAACCACCTCCAGTGAAGGACAAGCCTCTGAAATTTGGTAGTAGCAAAGCCAATGGCGATCTCCCTCCTCTTTCACCAAAATGTTCAGAGGACAGCAACTCGGACCAGTTTGACGGAGTGGAGGTGTCCCCTGAGAAACTGAGTCACCCCACAGCCAACAGAGCCAAACCCCCACAGAGACGACCCCCATCAGCCCTCGTCACCAGTCCACAGGCTCTGAGTGGCAGGgaccagacagaagcagaaaaaTTGCCTAAACTGCTGGAGATTTCAGAAAGTCATTCACCACCATCCAAGCCTGAGCATCCTACCAAGAATCCAGTACCTTCCAGGCTAGCACTTCCCAAGGCTGTAGTGGAGGCCAGGGCAACCCAGGAGGAGAAGCCTTGTCTGGACAGCCTACACGCTGAGGTCAGGGAGCTGAAGATGGTTCTGGAGCTGCTGCAAAACAGACATGAACGAGACATACAGGAACTGAAAGAGGAACTGAGAGACGAGAGAAACAAACGTGTGGCGCTGCAGGAGGAGGTACATGGTCTTAGGACTAAACATTAATCCCAACTGACACCATGACCGGGCGGTACATCTAAGTCAGGCTCTATAATGTCATTCCCTTGAACACAAACTTGAAGTGAAATTCAAAATGTTCCTGGCGTTGGAGTGCAAGAGAAGAAAGAAAGGATGCATGTCTGCTTCCTCTGCAGACAAACCAGCTGAGGCCACATTAAGGGCTGGAATCAATCCGTATCTCTGAAGTATCACGGAAGATCCGCTTTATAGCTCGATGATTAAAAATGTAAAAGCAATGTTCCAACGTTTGCATTTAAGGTAAACGCTGCATCGGCAATTacctttaaagggatactttgggattttggcaatgaagtcTTTTATCTACTTCCCCGGCGTCAGATGAAcccgtggataccatttttatgtctctatgtGCAGTTTGAAAGAatttgctaactagcattagtgcaATTACTAACTAacgttagtgcaatgactggaagtatctactagcatgctagtagataccatagacttccagccaTTGGCCTAACTCTAGTTAGCACtggctcacaaaactacctctaacatTGAGtacatctgactctggggaaatagataaagggcttcattgccaaaatcccgaaatATACCTTTACATTTTAACACGGACCTTCCGTGATACTTTTGCGATAACGAGTGAATACAGACATAGATTGTAGTCTTCCATTTTGTTTGAGGGCATTCTGGACTTGATTGGCAAGGGACCAAAATTGGCAGGGGGCCAAAATGCTTTGTATAGATCGACCAAAATACTTTGTAGCCGGGATTCAATTCAAGGTGGGTTACAGTGCAGTGCACAATACAACTGATAACGTGTCTTTTAAAGTACTTTCACCCAATATGTACATGGTAAACACTGCACACGTTGGACCAAGCCTAAATCACTTTTAAAAGTATGTTATAGTGTGCCGTGCTTTAACACGGGACACTCAATGCCTTGCATTGAATCCCGGCCTTTGGAtagaaaatatgttttattttatattgATGATATTGTATATTTCATTGAAAGAACAACACCAACCGAAAATACAGAGGACTGGTTTTATACATTGAATGTGGGCCACGTTTCTCCTGTAAAAGCATATTTCTTATTTTTATGAGCATGTTTTGAAGCACAGTGTTTACAATATTTTGAAGCACTGTGTTTGCGGAACATGAGTCAACTTAACAAACTACTTGTATCTTTTGTGTAAACATTGTATATAAGAGTAACTATTTTGTGTCTCttttataaaatataaaataataccTGTCCAAAATACTCCAGTGACTCAGCAACTATTCTGCAATGCTGCATGCATCCATTGGGAGGCACCTTTGTACTACTGTTGTGAATTCAGTGCTGCATTGTAGTTGGCTTTCAGGCCACAAAAACAAAACTATATAAGTTAATTCTGTATAAATGAACCCTTTTCTCTTTTTTGGATGTGTCTTTAAGAATAGGTGCCAGGAGGTCACACTTGTGATCTAAATGTTAAATTAGTCATATAAAGGGTAAAGTGAAACTAATTAAAACCTTGAAATTAAGTGATCCGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159910 lncRNA upstream 115004 37776591 ~ 37776949 (+) True G139040
TU159908 lncRNA upstream 118449 37772990 ~ 37773504 (+) True G139038
TU159831 lncRNA upstream 198772 37692982 ~ 37693181 (+) True G138991
TU159626 lncRNA upstream 301396 37535056 ~ 37590557 (+) True G138805
TU159453 lncRNA upstream 359840 37531419 ~ 37532113 (+) True G138640
TU159990 lncRNA downstream 33572 37944902 ~ 37945164 (+) True G139102
TU159991 lncRNA downstream 34014 37945344 ~ 37945605 (+) True G139103
TU160029 lncRNA downstream 91736 38003066 ~ 38007585 (+) True G139139
TU160059 lncRNA downstream 125145 38036475 ~ 38036812 (+) True G139167
TU160070 lncRNA downstream 137608 38048938 ~ 38049391 (+) True G139177
XM_021561587.2 mRNA upstream 1443 37863203 ~ 37890510 (+) False LOC110489035
XM_021561592.2 mRNA upstream 1443 37863204 ~ 37890510 (+) False LOC110489035
XM_021561600.2 mRNA upstream 1443 37878652 ~ 37890510 (+) True LOC110489035
XM_021561609.2 mRNA upstream 3364 37863201 ~ 37888589 (+) False LOC110489035
XM_036947650.1 mRNA upstream 128238 37699225 ~ 37763715 (+) True LOC110501519
XM_021561732.2 mRNA downstream 806962 38718292 ~ 38734398 (+) False LOC110489135
XM_036947840.1 mRNA downstream 809941 38721271 ~ 38734398 (+) False LOC110489135
XM_036947848.1 mRNA downstream 809941 38721271 ~ 38734398 (+) True LOC110489135
XM_021561766.2 mRNA downstream 845903 38757233 ~ 38786447 (+) True LOC110489149
XM_036947868.1 mRNA downstream 878206 38789536 ~ 38823441 (+) False LOC110489163
TU159857 other upstream 67943 37777061 ~ 37824010 (+) False G139004
TU159966 other downstream 8405 37919735 ~ 37922070 (+) False G139089
TU159964 other downstream 8773 37920103 ~ 37922184 (+) False G139089
TU159962 other downstream 9018 37920348 ~ 37922583 (+) False G139089
TU159972 other downstream 9018 37920348 ~ 37922070 (+) False G139089
TU159974 other downstream 9061 37920391 ~ 37922070 (+) False G139089

Expression Profile