RNA id: XM_036947840.1


Basic Information

Item Value
RNA id XM_036947840.1
length 3994
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110489135
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38718292 ~ 38734398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatctatattcccagtcttgtgaaatccatagattagggcctaattcatttatttcaattgactgatttccttatgtgaactgtaactcagtaagatATTAGAAATTGTGGCATTTTatacagtgccgtgaaaaagtatttgccccatttctgattttctctatttttgatgTTGAtgcaaaacctaatattagataaagggaacctgagtttacaaatatggatactttttttttaaataacaaagtTATGTAACACCCAATTCCGTTGTGTGAATAAGTAACTGCCCCCTTACattcaataactggttgtgccacctttagctgcaatgactgcaaccaaatgcttcctgtagttgttgatcagtctctcacgtcgctgtggaggaattttgtcccactcttgcctgcagaactgctttaactcagcgacacTTCTGGGTTTTCAAGCAtaaactgctcgtttcaagtccagccacaacatctcaattgggattaggtctggattTTGACTAGGCCGTTTCAAAACTTGAAATTcgttgctttttagccattttcatgtagacctgATTGTggattttggatcattgtcttgctgcatgacccggctgcgcttcagcttcagctcacagacgtaTGACCTGACATTCTCTGATACTGAGCAGAATTCATTttttccttctattaaggcaagtcttCCAGGTCTTcgggcagcaaagcatccccaaaccatcacactaccaccaccatgcttgaccgttgGCAACCGTATCAACATGAAAAATAGGCCGTAACCCTTCCAAGCTGAACAGCTGCTCAGGAAAGCCCAGACTGACAGTAGTAGAAGATGGACCAGGCCTTTCCCAGTCTCCAGACCTCAGCCACTGAGCTCCAACTCAGGGTGGACTTCTTCAGAAAGTTGGGCTACTCCCCCATGGAGGTTCGGGCCGCCCTGCTGAAGCTAGGCCTGAGTACAGACACCAACTCTGTACTGGGGGAGTTGGTCCGTAGTGGAGCCAGCACTGGTACTTCTAACTCCACCATTCCTGAGAGTGTTGAAGATACTACTGGCCCCAAAAGCCACACAGGCTCCAGCATGGCCTTCTCTAGGACCCATGGCTCCCCAGGAGACAGACCAGTCTCATTACTGGAAGACAGGATGGACACAGACAGTGGACTGAAACCTATCGTCATTGACGGCAGCAATGTGGCCATGAGTCATGGTAACAAGGAAGTGTTCTCCTGTAAGGGAATTGAGTTGGCAGTGATCTATTTCCTGGATAGAGGTCACTCAACCGTCATTGTGTTTGTGCCCTCCTGGCGCAAGGAGCAGCCCAGGCCTGATGTCCCCATCACAGACCAACACATTCTAATGGAGCTAGAGAAGAAGAAGATAGTTGTCTTCACGCCCTCGAGACGTGTCGGTGGTAAACGGGTGGTCTGCTACGACGACCGTTTTATTGTGAAGCTGGCCTACGAGTCGGACGGCGTGATCGTGTCTAACGACACCTATAGGGACCTCCAGGGAGAGCGTCCGGAGTGGAAGCGCTGTATCGAGGAGAAGCTGCTTATGTACTCTTTCGTCAATGACAAATTCATGCCCCCAGATGACCCGCTTGGTCGTCATGGTCCCAGTCTGGAGAACTTCCTGAGGAAGAAGCCTCTACTACCAGAACAGAAACCCCAACTCTGTCCTTATGGTAAAAAGTGTACGTATGGCGTAAAGTGTAAGTTCTACCACCCTGAGCGCACTCACCAATCTCACTGCTCATTGGCTGATGAGCTCAGGGAGAAGGCAAggctctcctcagtaaaagaggACCGGAATCACATGATGTcacacctgaggggcccccagGCCGGCCCGAGCCCCTATCCCACCTATTCTCTGGAGAATGACCTGGAGCACAGGCTGACGTTGGAGCATCGCGGTTCCCTGAGGGAGGGTCCCAATAGCCAGGTAACTGAGAACATGTTTCTGTCCTGGGATGGGCCACACTCCAGTAGGAACCAGCAGGCCCGCAGCCCCACAGCAGTAGGCCAAGGACAAATGGACTGGCCCAATATGCCCAGTATGTTCTCCCCCTACGCTACTACTGACCTCCCCTATGCCAGCATCTCCCATGAGTGCATGGACTCTGGTTTTGGCACCTATGAGAGCCAGTACTCGGATGTGTCCCAAGGCCACAGCAAGGCCTTCAGTCCCAGGCAGCAGCAGAAACAACAGGGTTCCAGACATCCAGGCATGCATCCAGAGAGGCTGGCCCAGGACAGCCTCCAGCCCTGCAGGTGTTGTTTCCATTTGGCTCCCTTCACAGGTCCCCAGCAGCAGCACCACAGCAACCCACACCTTGAGTCCCAATCCCAGCCAAGGTATGACACCTACTCGCCTCCTCTATTCCCACCCAACATGCACCACTACAGCCTCCCCTGCAACTTCCAGCAAGGCAGGGTGGGGGCACATAATTTCCACCCCCATCAGCACCCCCAGAAGTACTGGTCAGACCCCTTCCATGGCGGGGTCCCCCAGGCTAGGGCATTGTGTAGCCTCACCCCGAGCCCCCACCATCACCCCCCAACCCCGCATGGGGCCCCCCACTCATGCTCCTCTTACAGGAATCAGCAGGAACTCAACTCCTGGGCCCAGCCACCTCCACCTTCTGCCTTtgacacagacagagaagagctccgtAAGAAACTGCAGGCCATCTTCAACCCCCACCAAGTAGATACGGTCATGGGGATGTTCCCTCACCTGATGGATGCCCAGAAGCTGGCTGCAGAGATCCTCAATTTCAAATCTGATGGGGGGGCCTTCTGATGCCTCTAAGCATCTTGTCTACGGGGTTAATTCAGGGTTGAGAAGCTTGCACAACTCTAACTTCCACATAAATCATTAATTGATTTCATTGGGATACTCTTGTTATTTTCCTTTGTAATTTACTGTAACTGATTGAAAGGGCAACGTTTTATTGTTGATGTTGTCCTTCCTTAGCAGTCATGTGCTTGCATAGCTTATGTTAAATCCATGACAGGTTGTGTGTGCACAGTTTGGGAGAAGTGTAGAGAATTGGGATGAATCCCCTGTCGTGTTTAACTGGATTATTTGAAATTTATTGAAAGTTGTATACATTTATAACAGTGTAGTCAAATCTTGCCTCTAGATTCAATACTACGGCAAAAGTGAATCTAGAGTGTTTGACTGTTGATGCATATTGTATCATCATTTGGGATATACCGTATGTGATCTCTCGTTCGTCTGAAATTCAGCTCTCATGTAATAAGAAATAATTGTCTCAAATAATGTCATTGTCTGAAATTACACCTTTTACTATTATGTTTTTTTATATTGTGGTTCTGATGGCCATAATGTATTTCCTGTCTCATAGACCAATATATTCCTTATTCgatctctttatgcagtgtggaATACAATGGTATACATTTTTCCCGTGTATAAAGCTACGCCCAAAGAACCCCAAATACTATACAGTATCCTTCTAACCAAGATAATAAGTTGGAGAAGCTGCCAAAGAAACTGAATTAATGTTGGAACAGCACCTTGTCAATGACCCAAATATTGTAATTATCTCATAGACCAGAATGTGATGTTCTCAGCAAGATAATGTATAAAAATGTGTTAtgtaatatgtacagtatgtcctgtgAAGGTCTCTTATATCACCAAATACTGGGTAAATCCAATAGAtattttaaagtaactgtccagtgtttccagatttctatgaaatatgacctataatgaATTACAATACAGTTTGAGTGATTTGAGTTTTCCTTCCAAAACGTTTTTAAGGATGTTAAAAaacagcttttctgtgttggaatggtgtggatgtaccccaacaacagaatggtgtgggcgtataccggtataaaaaaatattcatgcgaatagactgctgattggccagctcaagCTCAATGACGATGACCTCATCCTCTATGtggaaatagcaagcattttttaaaCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161248 lncRNA upstream 13963 38707079 ~ 38707308 (+) True G140271
TU161241 lncRNA upstream 21526 38699431 ~ 38699745 (+) True G140264
TU161190 lncRNA upstream 61059 38659946 ~ 38660212 (+) True G140214
TU161186 lncRNA upstream 61651 38659379 ~ 38659620 (+) True G140212
TU161179 lncRNA upstream 69068 38651958 ~ 38652203 (+) True G140205
TU161308 lncRNA downstream 112947 38847345 ~ 38847686 (+) True LOC110489178
TU161300 lncRNA downstream 116509 38850907 ~ 38852062 (+) True G140318
TU161302 lncRNA downstream 127109 38861507 ~ 38973817 (+) False LOC110489269
TU161349 lncRNA downstream 218437 38952835 ~ 38963883 (+) True G140363
TU161301 lncRNA downstream 236759 38971157 ~ 38973817 (+) True LOC110489269
XM_021561628.2 mRNA upstream 809941 37891951 ~ 37911330 (+) False sh3d21
XM_021561620.2 mRNA upstream 809941 37891953 ~ 37911330 (+) True sh3d21
XM_021561587.2 mRNA upstream 830761 37863203 ~ 37890510 (+) False LOC110489035
XM_021561766.2 mRNA downstream 22835 38757233 ~ 38786447 (+) True LOC110489149
XM_036947868.1 mRNA downstream 55138 38789536 ~ 38823441 (+) False LOC110489163
XM_021561777.2 mRNA downstream 55139 38789537 ~ 38823441 (+) False LOC110489163
XM_021561784.2 mRNA downstream 62995 38797393 ~ 38823441 (+) False LOC110489163
XM_036947869.1 mRNA downstream 63021 38797419 ~ 38823441 (+) True LOC110489163
TU160072 other upstream 669527 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 777259 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 780557 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 799201 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2804897 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 3233976 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 3233976 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3775932 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4996474 43730872 ~ 43731218 (+) True G146054

Expression Profile