RNA id: XM_021561784.2


Basic Information

Item Value
RNA id XM_021561784.2
length 2811
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC110489163
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38789536 ~ 38823441 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCTGTGACACCGTCGTCACTTGCGCAAGTGCGCGTGAAAAAAAATGAATCAACATTCCTTGCACGAACAGAACAGGTCCTTGGACATTGCACTGCACATCATGCGTGGAAGCACTCCTTGGAAATGTCTGGAGTGAATAAAGAAACTGGGAACTCATTGAACGCAGTAAGCAGATCCCCAGTAGAAGGGAACAAGAGGGTGAACAGTGGAGTGGAGCGCCCCAGAGTGGAGTCCGGCCCAGAGAGCCAAGGGAAAGTGAAGCGTGAGGGCTGGGATGAGCTGAAGCGCGAGGGCAGGCATGACCTGGTACGCCAGTCCAGCCACACAGCGTCCAACAAAGCCACAATGCTAGCCATGCCGCAGTTTGGCCTGCGCGACAACCTCATCCGTTGTGAGCTGCTCAAGAACGAGGACATCTACACCTACCTGGAGAATTTCAGtttcttcATAGGCACATACAATGTGAACGGCCAAACCCCCAAAGAAAGCCTCCGTCCCTGGCTGGGCTCCACATCCACTCCCCCTGACATGTACTGCGTGGGGTTCCAGGAGCTGGAcctgagcaaggaggccttcttCTTCAACGACACGCCCAAGGAGACCGAGTGGATGAAGGCTGTGTCTGAGGGGCTGCATCCAGACGCCAAGTACGCCTTAGTGAAACTGGTTCGTCTGGTGGGCATCATGCTGCTGTTTTACGTGAGGAATGAGCACGCCAAGCACATCTCTGAGATGGAGGCAGAGACCGTGGGCACCGGCATCATGGGTAGAATGGGAAACAAAGGTGCTGTGGCCATCCGCTTCCGCTTCCACAACTCTGACATCTGTGTGGTCAACTCCCACCTGGCCGCCCACATCGAGGAGTACGAAAGGCGCAACCAGGACTACAAGGACATCTGCAGTAGGCTGCTTTTCCGCCAGCACGACCCCGCGCTGGTCCCACTCACCATCATGAAGCACAATGTGGTCCTATGGCTGGGAGATCTCAACTACAGGCTAAGTGACCTTGATGTTGACGATGTGAAGGACTTAATCGCCAAGAAGGATTTTGAAACTCTGCACAGTTATGACCAGCTGAAGAGGCAGATCGATGAGAAGGCTGTTTTCGTGGGCTTTGTGGAGGGAGAAATCGGCTTCCTGCCCACTTACAAATACGACACTGGCTCCGACCAATGGGACACAAGTGAAAAGTGTCGCGTGCCGGCGTGGTGTGACCGGATCCTGTGGCGAGGCAAGAATGTGCGGCAGCTGCACTACCAGAGTCACATGGACCTGAAGACCAGCGACCACAAGCCAGTCAGCTCCCTGCTGGAGATGGGGATCAAGCTGGTGAATGAAGAGTCTTACAAAAATACATTTGAGGAAATTGTGCGCTCGCTGGACAAGATGGAGAACGAGTGCATTCCGTCCGTAACGCTGTCCAGGCGAGAGTTCCACTTCATAGATGTGAAGTTCATGCAGCACCAGGCAGAGACTCTGACCCTCCACAACGACGGGCAGGTCCCGTGCCAGTTTGAGTTCATCCAGAAGCTGGATGAGCGCACCTACTGCAAGCCCTGGCTCACCGCCAACCCGGCCAAGGGCTTCATCGCTCAGGGTGGGAACGTGGACATCGACCTGGAGGTGTTTGTGAACCGCTCCACCGCCACGGAGCTCAACGCAGGCCGCCAGCAAATCGAAGACATACTGGTGCTCCACCTGGATCGGGGAAAGGACTACTTTCTCTCTGTGTCGGGCAACTACCTGCCCAGCTGCTTCGGCTCGTCCATCCAGACCCTGTGCCAACTGAGGGACCCCATCCAGGAAATGCCCCTGGAGACCATCCGGGAGCTGACGTTGTCAGGTGATGAGACCAGAACTTTAATCATCGATAAGCCCCTGGATATCCCTAAAGAGATATGGCAGATGGTGGACCACCTATACCGTAATGCTCCTAAACAGGGGGAACTATTTCAACAACCTGGGCTCCGCAGTGAATTTGTGGAGATAAGGGATTGTCTTGACACTGGCATGCCAGACTCGCTCCCTGGCAGTAACCACTCTGTGGCAGAAGCACTGCTCATCTTCCTTGATGCCCTCCCTGAGCCTGTGGTCCCCTTCTCCCTGTACCAGCAGTGCCTGGAGTGCTGCTCCAACACCAGTCAGTGTAAAAAGGTTGTATCCTTGTTACCTCAGTGCCATAAAAACGTGTTTAACTATATAGCGGCTTTTCTCCGTGAGTTGTTGaagcattctacacacaatagcctGGATGTCAATATTTTAGCCACTATTTTTGCTGCCTTGCTACTGAGGTCACCCACGAAGCAGGACCTTGCAGAGAAGAGGAAAACCCAAGAATTCTTTCAGCATTTCCTAGTCCAGGACCTCTCCTGAATAGAAGAGGGTGCTCCTGCTGTGTCTTTTAGACACTATTTTAGTTTAATGTACAGCTCTGTATTTGTAATAAGTTCCTATTCATATAGATGGCTCTTTGTATATATCCAGTCAGTCCAATTGTTTAGGCCTACTCTCCTTTGATTTGAAATCAACTATGTTTTGACAAGCAATGTTTAACCTGTAAGCTGTTGATGCACAGCTAATATTCTGTCACTGAGTAGCTGTAGTAAACTGACCATTTTTAATGTATATTTACCAGTTTATTTAAAGAAAATAAATTTGTGCTGTTTTGTGAAGGCAAAACAGTGGATCGTTTTATATATGAAAGTATTTCAAACAGTTGTGGTTTGGCGATTTCATGTTTCTTTCCCATTTAGCAAGCaaatggaaaaagtttgtttTGGAATTTAATAAACCCACTGTCACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161248 lncRNA upstream 90085 38707079 ~ 38707308 (+) True G140271
TU161241 lncRNA upstream 97648 38699431 ~ 38699745 (+) True G140264
TU161190 lncRNA upstream 137181 38659946 ~ 38660212 (+) True G140214
TU161186 lncRNA upstream 137773 38659379 ~ 38659620 (+) True G140212
TU161179 lncRNA upstream 145190 38651958 ~ 38652203 (+) True G140205
TU161308 lncRNA downstream 23904 38847345 ~ 38847686 (+) True LOC110489178
TU161300 lncRNA downstream 27466 38850907 ~ 38852062 (+) True G140318
TU161302 lncRNA downstream 38066 38861507 ~ 38973817 (+) False LOC110489269
TU161349 lncRNA downstream 129394 38952835 ~ 38963883 (+) True G140363
TU161301 lncRNA downstream 147716 38971157 ~ 38973817 (+) True LOC110489269
XM_021561766.2 mRNA upstream 10946 38757233 ~ 38786447 (+) True LOC110489149
XM_021561732.2 mRNA upstream 62995 38718292 ~ 38734398 (+) False LOC110489135
XM_036947840.1 mRNA upstream 62995 38721271 ~ 38734398 (+) False LOC110489135
XM_036947848.1 mRNA upstream 62995 38721271 ~ 38734398 (+) True LOC110489135
XM_021561620.2 mRNA upstream 886063 37891953 ~ 37911330 (+) True sh3d21
XM_021561795.2 mRNA downstream 144 38823585 ~ 38847695 (+) False LOC110489178
XM_036947870.1 mRNA downstream 31741 38855182 ~ 38857226 (+) True LOC110533769
XR_005036648.1 mRNA downstream 33780 38857221 ~ 38858528 (+) True LOC118939688
XM_036947871.1 mRNA downstream 75725 38899166 ~ 38916542 (+) False LOC110489224
XM_021561860.2 mRNA downstream 76201 38899642 ~ 38916542 (+) True LOC110489224
TU160072 other upstream 745649 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 853381 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 856679 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 875323 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2715854 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 3144933 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 3144933 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3686889 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4907431 43730872 ~ 43731218 (+) True G146054

Expression Profile