RNA id: TCONS_00027694


Basic Information

Item Value
RNA id TCONS_00027694
length 4487
RNA type mRNA
GC content 0.40
exon number 23
gene id XLOC_013855
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 7838644 ~ 7861280 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACAAACTGAAAGAAACAATTCATAATCACGTTTTGGCGAGCCATGGCACTatcaagaaaaaggaaaatcaacagtgagtgcaggaaatttcagtcaggatggggcaaagaatatttcttcacagagTATGTCATAGTAGAGCACTGTGTCTGTTTGCTTGACTGCGGTACATCAAGAGATTCTGCATTCAATATACCACATTCTACTAACAATCCTGGGGGTCATCTAGAACAAACAAAAGACGCAGCAAGGCATAATCTCTGGCCACAGGGAACGTGCTAAGCTGAGGATCTTGTGAAAGCTGATCTGTCATGGATTCATACACCATTAACTTTATCACCTGGAATGCTAACGGACTTAAGCAAAACAAGTATCAGAAATTTCAAGAACTTCAATGCGCTGATGTTGTTTTCCTACAAGAGACACACATTGGAGCAGGGGATGAACATGTTATAGAAGGTTTAAAAAAGCGGTGGAATGTTTTCTATACAAAGTACAACTCTTCCAGCAGTGGAACTGCCATTCTCGTCAGAAAGAGTCTAGATTTCAAATGTTTAAGTGTCGAGAAAGGTAATTGTGGTGAATATGTATTGTTGAAATGTGAACTGGAAGGTTGCCTGTACACTCTAGTGAGTGTTTATAACCATCAGACAGACACAAAAACGCTTGATAATCTTTCAAGATACCTGCAGTCAATGACCACAGGGCTGCTGGTGATTGGTGGAGATTTCAACACATTCCTCAATCCGTTTATCGACAAAAAATGGAGTACAGGCAAGATGACAAAGAACAGAATGCACAATAAACTGCTCTTATGTGTGGAGAATTTCATGAAATCTCTTCAGCTGGCTGATGTGTGGAGAAGAATGAACCCTGTAAAGCAGGATTTTACATTCTACATAAGAGATCGTCCAGTGTCCAGACTCGATtacttcttcattccagatgaatGTATGTGGCGTGTAGGAAGTTGTGAAATCATGAATTCAAGGTTCGGAGAGCTCAAAGATCGTCAACCTGTGTCTTTAGAGATCAACTATGTCTCCACAGTGCCTCTTCTGATAGATCAAACACAGTCACTCTTCAAACtatttcactgcaaaaaaatacttttgactGATGAAACCAGTTCATCACAGTCTGAAGAAAGCTCACCTGCAGTCAGTGAAGTTGACATTGTGTCAGCGGTTCAGTCTCTTCAAGTGTCAGACACAGTAAGACCAGACGACATCCCAGTGTCCTTCTATAAAGACAACATCCGGGATGTAATTCCATACATAAAGATGCTCTATGACGGAATCCACAGGGGTGAAGTCAACTGCTCTGAATTGTATTTTCAAGATCCACAGGATGATATCCCTCACTTTTTTAATGCCGACTACCTCATCATTGCAACTATTCTGGCAAGACGTCTTGATGATTTCTTGAATCCTCAGTCAAAGGGTATGATTAAGGATTCAGCAATTGTTATGATCACTCCTAAAACAGTCTGCACTGAAGCAATGCTCTGCTGTCTAAAGGATGAAATTGAGGACTCACATTCAGTTCTTTATCAAGACTTTCCGCTTGTGGAAAAAATCTTCAGAGATTCAAAATTCAAAAAGTGTCAGGGCTGCCCACTGAAGCCAGTACTCACAGCTTTAAAACTGAAAAGCTGCGCCTTAAAGTTGTGTAAGAATTTAGAAAATTATGCAGTGCATGTTTTCAAGACAAATGTGATCATTTGCGTCCCATCTGAAGACCTAGATGAGATACTTGCTATGGAAAGCAGCAACAATGAAGAATATGATATTATGACATTATACAGAGGACAAAGTGTTGAGGGTAATGAGTCCGCAAGTGAAGATTATGATGGACTGTTGGAGGACACAGAAGACAATTCACAGTGTGAAGACAGCGACAATGGGTCAAATGAACATGAGGGAAAATCTAAATCGATTGAAAGaacaacCATGTATGCAGTTGTAACTTTAGAAGAATCAGAAGAGGTGATGGTGACAGCATCAAACTGGTTGACCGCAGACAAAAAACAATGTTACTGGCCTCCATACAAATCATCAGAGAAATTCATGGAAGCTGTTCAGTACAGATTTGCACCTCAAACAGGAGAGAAATCTTGGGAGAAATTAGCTGTCCTGTTTCATGGAGAATATGGCACTTATGAGGAGGCcaagaaaaaactaaaacaaatgaagCAGCCGGAACAAGCAGCCATAGCAATGAATCAAGTAACAGGAACCTGTCCACAGTCTCCTGGGCCATCTTGGTCAGGAATTTCACAGAATGCCAGTGGCACTAAAAGAAAGCGTGAATCGAGGGATTTAAAGATCAGTGCTAAATCATATTCAGatatGGAAATACTGAATATGACAAAAAAGATCATGAATGAAGTTAATGTCAGATTTCAAAACATTAAAAGCACAGACCAAACAACAAATGagataaaaaacacaattttAGATTCCATTGCAAAAATGAATGAGATGGACAAAGACAAAAGAAGAAAGGAAACCATTGGTGTTTTTGGCAAAACAGGAGAAGGAAAAAGCTCTTTATTAAATGCAGTGTTGGGATTAGAAGGTCTGCTGCCATGTGGTAGTCTTGGTGCCTGTACAGCAGTGATTACTCAAGTGGAAGCAAATCTTGAGGACTCTGAATACAAAGCTGAGATTGAGCTCATCTCTAAAGagGAATGGGAGAATGAGATTGCTTCCACAGATGAAAGGACTGATACAGATAATGAAAGGATCATTGCAGTGTATGGGGCTGATGCAGATAAGAAATCACTGGAAGAACTTAAGAAAAATGCCAAATATGCTGAAATTGATCACTTTTTGTCTACCGAGAAAAAAACAATTTCGCACACTGAAgtCCTTGACTTTGTCCGTGATGTTAAATGTCACATTCAGCAAAGTGAGTATAATCCTGGTGGCTGGTACTGGCCTCTTGTGAAGAGTGTGACCATCAAGATTCCAGATCGTCAAGAGCTTCTGGAACACATTGTGCTGTTTGATGTTCCTGGCACTGGAGACTGCAACAAGATACGAGATGATCTGTGGAAATCAAGAGTGAAGGAGTGCTCTTCTGTGTGGATTGTAAATGACATCAAGCGTGCAATCAGTAGCAAAGAGCCCTGGAGCATAATCGAGCACTGCATCCAAGACTTGGGACCAGGAGGACAGTGCAAAACAATAAACTTCATCTGTACCAGGACTGATGACATTAATATAAAAGAATATCTAGGaTCTGCACAGCCATCTGGAGATCACTTTTCTTCAGACAAGAGTTCGAAAACAGCGTGCATTCATCATAGGAACAACTCTGCAAAGGATACTCTGAAAAGGAAGCTTGAAAACATGAAATCAAAAGACGTCAGAAGATTCACCGCTGATGTTTTTGCTGTCAGCTCTAAGGCATACTTTAATGAAGATCTCCAGATGGATAAAAATGAAACAGAAATCCCAAAGTTGCAGGACCTTCTCAAGAACACCAACAAGAGCATCAGGAGGGAACTGATCAGAGATTATGTCAATCAAGCAAAGGGAGTTTTGTTCCTTATCCAACAAACCAAACTAAATACAACAGATGAAGAAATGGCAAAGATTAAAGCTGCAGTTCGTAATGATTACAAAGAGAGCCTTAAAAAAGCACTGAGGGAACTGAACGGTCGGTTTGATCCACTATATGAGACTATAGAGCAATGTTTCTCAAAGGGAGTGGAGAAATCAGTGGACCAGTGTCTCAGTACCACAAAGCCTGTGATTTCATCTGTGCCATATGATAAAACCCTCCAAGCATTGTGCAAGAAGAAAGGATTTTGCTGGCCACAATACTGGGATGCACCTGTAGATCTAAACAAGTGCTTGGCCAAACACATCTACGACAACATCGATGAGGAGTTCAGCTTGATATTTCCTGTTGATAGTAATAACATAACAGGGAGGTCAGTGCAAGAAAAGATTGATAAGTTCAGTGTTGTTCAGAATGGCACTGTTTACTCTCCATCTTCCATTCTATACCACATTCAGAACTTCATGAAAACAGAGGAAACCAAAGTGAAGACATCCCTCAAACAAGATGTTGTTAATAGAAAGAAGAATGTCTACTCAGTAATCCAAAAAACAATTCGGGATCAAATGACTGCAGGCTATAAAAAAGCTGCCGAGAAGAGAGGACAAGGAGCCATGGGAAAGAGAAAGagcacaataataaaaacaattgaatCATTAAAAGACAGCATGTTCGAAGAAGCAAAAATGCAATTTCTGAATGAGTTCAAGTCCTTGATGTGCTATATATGCGAGAGCCTTAAATCTAAGCTGAGCAGATCAATGGAGCGCTCATTTTCACAAAGCAGCAAAGCTTCCTTGATGGATGTCTCAAGAGAGATCGAAACCCTGGAGACACTGTCTGAATACATTGTCACTTAAATCTGACTGAAGTCATCATTTAAACACAAGGACAAAAGAAACAACATGTCAGCAT

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0003924 GTPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-148 Predicted to enable GTPase activity.

Ensembl:

ensembl_id ENSDART00000140006

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027689 lncRNA upstream 59340 7775595 ~ 7779304 (+) True XLOC_013851
TCONS_00029871 lncRNA upstream 563290 7274583 ~ 7275354 (+) True XLOC_013834
TCONS_00027654 lncRNA upstream 570618 7242117 ~ 7268026 (+) True XLOC_013832
TCONS_00029870 lncRNA upstream 589284 7244699 ~ 7249360 (+) True XLOC_013833
TCONS_00027652 lncRNA upstream 658950 7173881 ~ 7179694 (+) False XLOC_013831
TCONS_00027699 lncRNA downstream 19897 7881177 ~ 7886165 (+) False XLOC_013857
TCONS_00027700 lncRNA downstream 21663 7882943 ~ 7885479 (+) True XLOC_013857
TCONS_00027702 lncRNA downstream 55510 7916790 ~ 7919014 (+) False XLOC_013858
TCONS_00027704 lncRNA downstream 57870 7919150 ~ 7923271 (+) False XLOC_013858
TCONS_00027705 lncRNA downstream 58855 7920135 ~ 7922594 (+) True XLOC_013858
TCONS_00027693 mRNA upstream 412 7835025 ~ 7838232 (+) True XLOC_013854
TCONS_00027692 mRNA upstream 21758 7810028 ~ 7816886 (+) True XLOC_013853
TCONS_00027691 mRNA upstream 22355 7810028 ~ 7816289 (+) False XLOC_013853
TCONS_00027690 mRNA upstream 33512 7799036 ~ 7805132 (+) True XLOC_013852
TCONS_00027686 mRNA upstream 40692 7757682 ~ 7797952 (+) False XLOC_013851
TCONS_00027696 mRNA downstream 3487 7864767 ~ 7873836 (+) False XLOC_013856
TCONS_00027697 mRNA downstream 3502 7864782 ~ 7869205 (+) True XLOC_013856
TCONS_00027698 mRNA downstream 16842 7878122 ~ 7886461 (+) False XLOC_013857
TCONS_00027701 mRNA downstream 33806 7895086 ~ 7923910 (+) False XLOC_013858
TCONS_00027703 mRNA downstream 55510 7916790 ~ 7923570 (+) False XLOC_013858
TCONS_00027663 other upstream 354313 7484217 ~ 7484331 (+) True XLOC_013841
TCONS_00027658 other upstream 532081 7306467 ~ 7306563 (+) True XLOC_013837
TCONS_00027653 other upstream 658979 7174703 ~ 7179665 (+) True XLOC_013831
TCONS_00027648 other upstream 682945 7154501 ~ 7155699 (+) False XLOC_013830
TCONS_00027637 other upstream 803324 7035206 ~ 7035320 (+) True XLOC_013824
TCONS_00027715 other downstream 437714 8298994 ~ 8299110 (+) True XLOC_013865
TCONS_00027731 other downstream 1230591 9091871 ~ 9096360 (+) False XLOC_013877
TCONS_00027739 other downstream 1288814 9150094 ~ 9169225 (+) False XLOC_013879
TCONS_00027757 other downstream 1568577 9429857 ~ 9429944 (+) True XLOC_013888
TCONS_00027758 other downstream 1582492 9443772 ~ 9443878 (+) True XLOC_013889

Expression Profile

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