RNA id: XM_036947871.1


Basic Information

Item Value
RNA id XM_036947871.1
length 5123
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110489224
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38899166 ~ 38916542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAGCAACTGTGCGGTGGTCTCTCTGAATTGTGATTGGTCACTCAACATATGTGGGGCCCTCCAAGATCAGGAACGTGCAATTAATCATGTAGGCTAATTGGGAATCACGTGGACATGACTGAGAGGGTTGGGGTTGGTTGGTGGTAGGAAGATGCTCCCTGGTCCTTTCTATATTGACCAAGTGTGAAAACTGACCAGGGGAGGAATAAAGACGTGATCCAACGCAGAGCGGGGCCCGAGAAGTCCAGGCAAAAACATAGGGGGGGACAGGGACTGATATAGACTAAAGACAAGCGGGACTGAACATGGCAGAAGGAGTCTGCAAGACCGAAGAGGATGAAGGACCAAGCACAGAGGAGGACTCGGAATCTTTCCACGGTGTCGGCGTATGTAAATGGTTCAACGTGCGCATGGGCTTTGGGTTTTTGTCCATGACCAACCGAGAGGGGGTCCCGCTCGAGTCTCCGGTCGATGTGTTCGTCCATCAGAGTAAGCTTCACATGGAGGGCTTCCGCAGCTTGAAGGAGGGCGAGGCAGTCGAGTTCACCTTCAAGAAGTCAGCCAAAGGCCTGGAGTCCCAGAGAGTCACTGGGCCGGAGGGCACACACTGTGTGGGCAGCGAGAGGAGACCCACAGGCAAGAGCATCCAGAAACGCCGCTCCAAAGGAGATAGGTGCTACAACTGTGGAGGCCTGGACCACCATGCCAAGGAGTGCAAGTTGCCACCCCAGCCTAAGAAGTGCCATTTCTGCCAGAGCATTGCCCACATGGTCGCCAACTGCCCAATCAAAGCACAGCAGTCCTCGCCACGTTCTCAGGGAAAGCCCTCCTCCTTGAAAGGAGACGAGGAGGAACACGGCCACTCGCCCCCGTCCCCCGTGAGCTCTGATTGAACGAGGAGACGCAGGAAGGAAGCTGGGGGAAGCACAGAAGCCAATCAAACTGCTTTACTGGAAAGATGGCCGCTAAGTTTCCTTTCAACTATATAAGATGCTTTTGGAACTACCTCAGGTTTTTGTAAACAAAACGATCATGAAGAAAGAATGTACTGAAGTTAATATTTTTTTGGTGTAACACTCACAAATACAGCTGTATTATTATAGCACTCAGGaaatatttgtaaaaatgtatggaACCACTAATGAGGGGTTTAAACTTGTAATGGCACATCACATATTACTTTGATGTCTTTATAGAATAGAAAGTTGTTTAATTTTTACAGAGCAGATAATGAGAAACCATGCCAATCACACTGGCATGCTACTATACCAAACTCACCAGGAAGCTTAAAATCACAGTGTCAAGTAGATAGCTAAACACTTTTGCTGCCTTACAACTTCTTGACTTTCCTGATTGTTACACCCCACTATATCCGACAAAGAAAGAGTTGTGACACTACACCTCTGCAAATGAATGTTAGTCTCATGGGTGGTAATGGGTGGGTACATATGAACCGACAGGGTATTGGGTAATAGCTAGAGGCAATGTATTGGTGGCTGCCAATATTGTAAGTGACCATCCAGATGTCCTGGGGACAAATGAATGTCAAACCAAATAGTATGACTTCTATGGCCAGcttctggttgttgttgttgcgtAACTTCTTTATGTTGGGCCGGCACAATGCTGTCTCTTAGGTACTCATTCTCCCTCGTGGTACATGTCTGATCTGCTGCTGCTACATTACAACCAGACACTTAgaccctacagatgtaggatcttaatttgatcactcttttgttgctgagaattttccagcacagcaggaaatgcagctTGTAGTGCATTCAAggattctaaagtttgtaatttccacttgaaAATGTCACACTTAATTTGCCctaaagaaaaatgtatcaacccttataaaaaaaatgtccattaatttataatccacataataaatcacatttcctgttgctgcaggattattttcctgcagtAGCAAACTGATCTTACATCTGTATAATCAACTTGATCATCCTCTGCTTAGACTACATACATCAGCATTTGGAATTGAGCCACTGACTCCAGTAATCACACCAATACCTATGAAATGTTTCAAACATAAGTAATTTACCATGTAGAAATCACATGCAAGATTTGAATGGATTATTGAGGTTGATTCAGGAACCTACATAATCATACTTGTCTCGTTTATACTTGACAGtcaaagcagcagcagcagcatccgGCGTTAAAGTAGGAGCAACAAATGTTTTATTCAGTGTCGTCAATTACTAGGTACCTATTTAAGACATTGTCTCCAAGGAGCTTGTGGGGACTATACAGGAACACCACAGTTGTAGTCACAAGGCACCAGAACGGAAGAgaacggactgaaacagggagggaataCCAGAATTTGcccaataagaaatgcttgttttcgTTTGTTGCGAATCATTTCTGCTACCGTGCACTAATGAATGTCGACCCAGCCCTGCATGGAGGTGCATTTAGAGCTAGCTAAGCCATTCAGCCGTACTCCCGTTTTACAGGAGAAGCTGAAAGACAGACCTCCAACATCCAATTAATATATATTTAGAATTATTATGGAGCCTTTTTAAAATAGTCCTTGTTATTTATTTGTATCTAAATTGCGCTGCAGCTTCTCCTCATATTCAGGTTTAGGTCACTCTGTGATAGCCTGGTCCCGGCTCTGTTTGTGATGTCTTTCCAACTCCTATTGTCATTGTTACGCCAAACAAATACAGATCTAGGACCCGGTTAACTGTGACGGGTTTTCCATTACATACCAGACATCAGATATCTTAGCCACTCATGTCTGCCTTTATCTTGTTCAATGCTGTTTGAGTTTAAAGGGACGTAACACCCAAAATCTAAGTTTGTCAAATACCTCAAAGGGGTCTTCTGTTGAGGTAAGTCCATGTCCCAGGCAAGTTTTATATCCAGCTATGCCATAATCCAAAATGGAATTGCAGTGCTTATCTTTTCCATTAATTTGGGGTTGAGGCATATAGCTGGATCTATACCACCAATGGCAAAGGATGTGCATTCATCTTGATATAAGACAACTTTTGTGGTCTAAAAATATCGGGACAAATTTTATGACCTTTTTAATTATTTTGTTCTCTTTACTTTGCCTTGTATGATTTACTGCTACGCACAATTAGCTTTCCAGCGATGTTGTGTTGTGAATCTTCTCTTTTTTATCTATGCCAAAACCAATGTCACTCTGCACTAATCATGTAGGAGATacattattctattctattcagtttAATCTTATGAATATGTGTTCCATATTTTTATATTTTGATTTACACGATACTTTTGTGTGTAGGTGGTGAACGAAACGTGTATATATAACCTCCACTCAGGCTTGTCTCTCAGGAATCACACATCTGAAAACTCAGGGAATACTTCAGATTTTTTTCAAAGGCTTGGAAGGGGATATGGATGGGATTGGGGTGCAATGTTTCTCTATATTAGTTGTATGTGTGCAGTGAAAGACAAGGGAGTGTTCCGGTGCCAAATCAAAGTGCATGACAATAAAATGGTAGAGGACCCCCGGGTCCAGTTTTGAATGTCTCGGCATAACAGCAaaactctctttttctctaatCCGCACAAAATGCTTTAAAATGCCAGTTAATCATGAAGAATAAAACAAAATCTTGGTGTCCTTAAAACTAGTCTTAAAATGTTTTGACATGTGAGACTATATGAGTTGTTATTACACACGATATTATATACTCATACCGTGTCAACATATCTAATACCACACCTGCTGATGTTCTCTATTATTTTTTCCCTACATAATAATACGCCATGATAGGCCTGTAATATTCCTCTAGTATTGTATTTTTCCCTCTATACTTGTTGTTGATGGGGGAATTTAGGAGAATATTGTTACCATGGGTTAGTAGCATTATACACATTGGGGTTGTCTCGTCTCAGTACGTGGCTCAAGCATGGTATTTCAGACTATCAATGACTAATGTGACGATCCCAGATTGTTGTTATTGGGTGATGGGATACATTATTTTCCGAGTCACACTGTTTAAGTTAAGTGGTACATGTTTTAACTCAGGATTTTGTGGTGAAAGCACACGTTCATTGATTCAGTCATGTGGGActatagcgcacatagaacatctGTGTATAATAGGAGTCaagtttttttaaatgaacattTGTACTTGCCGGgtttagaaaatgttgcagtgCGAATGAATGCTGATTGCCACGGATGAGCTACACGTATACCCTTCCCATTAAAAAAGAGACACACACCCACGTGTAATTTTGCTCATCTCTGGTTAGTGAGCCCTCGGATGATTCAATTACATCAGAGTTGTTTCACAATGTATCACTCTCTACGACCTCTCAAATTCTCcactgtggactgatgaaaagTAATATTACTAATTTCTGCAGAGGACATTGCTTAGATCATAACACTGTTTCACTGTTCTGGACTAGTAGAAATAAGCAATGCGAGTGCCaaactgaatgaatataatgtaAACAAAATGTTGTACCTCAATAACTACATCAGCTACATTGGTATCTTGTATGGCACAGCTAAAGTTTAACCATGTGTGTTTGAGCAAAACTGTTTTACCTCAACCTATTTTGACTCCCCATTGATGTGATGTCACATTGTGATTTGATTGTTGGTTGTTAGATGGGTTAGATGTATCTTAAAAGGCAAAGTACTGAGTATATTATTATGTGCTCAGGGTTACATGGAAACCACAGAAAAACATATAGGCTAGTGCATACACAAGTGACCCTTGTGTCATGTTTATGCTTGTTGTGCCATTGCATCATTTGTGATCAAAGGCCATTTGATGCAGTGGTGTGGTATCTATGCGGGATGTTGCCTGTCATTTCCAAAGAATGTGCATTTATTATACTGAGGAATGTATCAATGTTTACTGCCATAAACCTTTGGCGCTTGGACCATATAATCTTATGCTCAGGTATTTCAAGCACCTCAGGAAACTGGGGTGATTGGTTGGATTTGTTATTCACTTCCTCAATTCGTTAAATGGCGTGAAGCATGCATTCCAAAAGAAACTGACTAACAGTTTACTGATTTGTGAAGATACAATTTCCTACTAGGTAATAATAAACATCTGCCACTATTCa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161300 lncRNA upstream 47104 38850907 ~ 38852062 (+) True G140318
TU161308 lncRNA upstream 51480 38847345 ~ 38847686 (+) True LOC110489178
TU161248 lncRNA upstream 191858 38707079 ~ 38707308 (+) True G140271
TU161241 lncRNA upstream 199421 38699431 ~ 38699745 (+) True G140264
TU161190 lncRNA upstream 238954 38659946 ~ 38660212 (+) True G140214
TU161349 lncRNA downstream 36293 38952835 ~ 38963883 (+) True G140363
TU161301 lncRNA downstream 54615 38971157 ~ 38973817 (+) True LOC110489269
TU161310 lncRNA downstream 57530 38974072 ~ 38974620 (+) True G140325
TU161396 lncRNA downstream 76461 38993003 ~ 38993230 (+) True G140409
TU161600 lncRNA downstream 90306 39006848 ~ 39007112 (+) True G140595
XR_005036648.1 mRNA upstream 40638 38857221 ~ 38858528 (+) True LOC118939688
XM_036947870.1 mRNA upstream 41940 38855182 ~ 38857226 (+) True LOC110533769
XM_021561795.2 mRNA upstream 51471 38823585 ~ 38847695 (+) False LOC110489178
XM_036947868.1 mRNA upstream 75725 38789536 ~ 38823441 (+) False LOC110489163
XM_021561835.2 mRNA downstream 11696 38928238 ~ 38936143 (+) False LOC110489198
XM_021561828.2 mRNA downstream 11698 38928240 ~ 38936143 (+) False LOC110489198
XM_021561842.2 mRNA downstream 11763 38928305 ~ 38936143 (+) True LOC110489198
XM_021561873.2 mRNA downstream 25680 38942222 ~ 38952111 (+) False LOC110489231
XM_021561880.2 mRNA downstream 25699 38942241 ~ 38952106 (+) True LOC110489231
TU160072 other upstream 847422 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 955154 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 958452 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 977096 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2622753 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 3051832 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 3051832 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3593788 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4814330 43730872 ~ 43731218 (+) True G146054

Expression Profile