RNA id: XM_021561946.2


Basic Information

Item Value
RNA id XM_021561946.2
length 4157
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110489269
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38861507 ~ 38973957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCATttgggcagagacagagagatttggCTGTCAAGGGTTTAACCCCACAAAACTACAATTCCCAACGCAAGGGAGCATTTTACCCAGCGGGTTTGTGAATGGAGAATCCTGCAAGATGGCGACTAATGCAACTGCTACAAACTTACCGTCTTTTGATTGTCCAACATGGGCAGGCAAGCCCCCTCCAGGACTCCATTTGGACGTGATGAAAGGTGACAAAATGGTCGAGAAACTGATCATTGACGAGAAGAAGTACTACTTATTCGGGAGGAACCCGGACATGTGTGATTTCACCATCGACCACCAGTCATGTTCACGCGTGCATGCTGCCCTGGTCTACCACAAGCACCTGAAGAGGGTGTTCCTTATCGATAACAACAGCACGCATGGTACCTTCCTGGGACACATCCGCCTGGAGCCCAATAAGCCTCAGCAGGTCCCCATAGACTCCACCATGTCGTTTGGGGCGTCCACGCGAGCCTACACCATCCGGGAGAAACCTCAGAGCCAGCAAGGAACCAACTCCGCCACGGGGGACAGCAAGGccggagaggatgaggaggggtcTAAGGGTCTCTTAGGGTTACCAGAGGAGGAGACCGAGCTAgagAACCTGACGGAGTTCAACACGGCCCACAACAAGCGCATTTCCACCCTGACCATCGAAGAGGGCAACCTAGATATCCAGAGACCCAAGAGGAAGAGGCGGAACTCAAGAGTCACCTTCAACGAGGACGATGAGGTCATCAACCCGGAGGACATTGACCCCTCAGTGGGGCGCTTCAGGAACATGGTGCAGACTGCTGTCGTCCCTATAAAGAAACAGAAAATGGAGAGGCACAGCTCTCTTAGTATGGATGACGTTGTGACGAGGCGCATCCACAACTACACCTTCGGCGGCGGCCTTTACGGGGACCTGCCACCCACCAGCCACGAGGGCCACCCTACTGGGCCCCCGAGCGGAGCCACTATCCTGGGCGGTCTCCCTCTGCCCTTCCCCAACCCGGCCCCAGAGGTGAACCTGGCCCCGGACGCCCCCCAGCCACCTGTCACCCTCAACCCTGTCCCCGTCACAGGCCCCTATCCCTCTGAGGTCCTCAACGAGCCCCGCAAGAAAAAGTATGCCAAAGAGGCATGGCCAGGCAAGAAGCCCACCCCCTCCCTACTAATTTAACCCTCTCCCTACACTACGGCGCTTTCTCAATCCGTCTTTCCTCTATTCCTTGTGTCCTCTCTCATGCATTGGAGAAGATCCAAGGTGTTTCCTCTTGGATCTTTTCCAATGTATTTTGAGTCTGAGGCGAGAGGACACAAAGAATCCAGGAAAGCCAAATTGGGAAAGAGCCTATGTGGTGGAGGCAGGGCTGACTCTCAGGGTATGGGCGGAGACATCAGGGACCATGACCCGTTGGAGGCGGATCGATTTTACttataaaactgtttttgggGATTTAATAGTTTTGTCAATGTTTTCTACGTTACTTCCTCGTTCTCCTAAAGATTATCCCAAAGACTTGAGTAGTACATTCCATGAAGACAGAAACACCACTCCTTCGGGAGCTGAATGTTTGATGCGTTTTACAAATTAAGTcctatatataaaaaataaaaggcAGTTCTTAGCAGACCAAGTCAGTTGGTCAAGTAAGAGTAACTTGTGGCATAAATCGGTGTCCCATGGCCGTGATATATTATCTCTAATTGATAGTCGGGCATCGTGCAGGGAAACAAACACGAAGCGGATGTAACTTAGGAAAACAGCCCttatgttggaaacaaacattatgTTCTCATCCAAattcacatgtatttattttccaagctacagCGCAAGTATTACAGGAGGTTTTTAAAGGACCTGCTCCGTGTtatcatttttgccatggaaaaaaaacgttgcgatactggtatcatcacagCCTAATCGTTATATGGTTGGTCACTGTGAGTTCCATATTACTATCTCCACTTCCTTCTATACGGTCTCAGTATTGGTTTGAAGTTGTGCGTAGTATTTTTGCTCACTGTAAACATgagctttcggaaagtattcaggccccttgactttccacattttgagacgttagtcttattctaaaattggtgATTTTTTTCTTATCAATCTAAACAAAAAacccatgacaaagcaaaaacgtgtttttagaaattttacataattattcagaccctttgaagcacatttggcagcgattacagcctcaacttcttgggtacgacgctacaagcttggcagacctgtatttggggagtttctcccattcttttcggcagatcctctcaaggtctgtcaggttggatggggagcttcgacgtacagctattttcaggtctccagagacgttagatcgggttcaagtctgggctcttgctgggctcttgtcccgaagcctctcctgcgttgtcttggctgtttgcttagggtcattgtcctgttggaaggtgaaccttcgccccagtcagaggtcctgggtgctttggagcaggttttcatcaaggatctctctgtactttgctgcgttcatctttccctcaacccttactagtcttccagtccctgctgctgaataacatccccacagcatgatgctgccacaaccactcttcaccgtagggatggtgccaggtttcttccagacgtgacgcttgacattcaggccaaagagttcaatcttggcttcatcagacaagagaatcttatttctcatggtctgagagttgtgccttttactgaggagtggcttccgtctgctgagatggttttccttctgggaGATTCTCCTATCTCTAAAGAGGAACTCCCATTGGGTtcttggccagctctaggaaaagtcttggcgGTTCCTAacttcactgtgttcttggggaccttcagtcctgcaaacattttttggtgttcttcaacacaatcctgtctcggtactctacggacaatttcttcgacctcatggcttgggttttaCTCTGAaatgcaatgtcaactgtgggacctttttatatagacaggtgtgtttgtgcctttccaagtcatgtccaaacagttgaatttaccacaggtggactccaatcaagttgtagaaacatctcaaagatgatcaatggaaaccggatgcacctgtgctcaatttagagtctcatagcatacttatgtaaataaggtcaaactgttttcaccttgtcattatggggtattgtgtgtagattaaggaATGTTTTAAATGTAATCCTTTCTAGAATATTGCTTTAACATAACACTGGAAAAAgtcagtctgaatactttccaaatgcactgcattTCTTTTTTTAATATCTATTTGTAAAATAGATACAAGATGGATTATTATAGGAATTGACGTAAGCAGTTCAGAGTTTCTGAAAAATGTCATTTTCTAAAGACTGAATAGGACTGTAGGTTTATATTTTTACACTTCTATCAAGATGAGTGCCGTGAGGAGAGAATGTTATGTTTACTCGGTTTACATTCACAATCAATATcagtaatacatttaaaaaatgttaataGACTGCACAGAGTGTTTTTAAATGCTGTCAGCCCATTATCAGAAGATATCGGTATGACCTGTGAGTTGCAACTCTGCCTGAATGTTAGTCGGTCCTCTAGATGGCGATATGTACATTGTAAATTTGCCTGATCTGCGCCACCGGTCGGTCACATGAAATAAAAGGTGGTAAGGTTCTAAGTTGGTGCTATTTGCTGTTGATCATTGTTTTGCAGGCCTTTTGAAATGATTCATTTTTTAATATGGTACACATGGTCTTGCATCACAGCCATAAAAGGGCTCTCAAAATGGAGCTTCTTGATGTTAAAAGAACTGCGTCAGTTTTCACACCAGCCAAATAAATTCTTAGATTGCCCCCTTTACTGGTTAAGTAAACATAGCTCAAATATAACAATCCTGCAAAAGCCATGCTATTTGTATCAACTTTGTACAGATGGACAGACACGTGTGCCCAGAACTTTTGTCCCTCTTTTGGCTGATGATGGCTTTTTTATTCACATAATACACTGTAAATAAAAACTGAATTTTGTCACAAACATGTCTTTATGTACAGTTTATAGAGTAGTGTCATTTTTACGCGGTAGTAGGCCTATATCTTCAAACGCCACGATTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161349 lncRNA upstream 671 38952835 ~ 38963883 (+) True G140363
TU161300 lncRNA upstream 112492 38850907 ~ 38852062 (+) True G140318
TU161308 lncRNA upstream 116868 38847345 ~ 38847686 (+) True LOC110489178
TU161248 lncRNA upstream 257246 38707079 ~ 38707308 (+) True G140271
TU161241 lncRNA upstream 264809 38699431 ~ 38699745 (+) True G140264
TU161310 lncRNA downstream 115 38974072 ~ 38974620 (+) True G140325
TU161396 lncRNA downstream 19046 38993003 ~ 38993230 (+) True G140409
TU161600 lncRNA downstream 32891 39006848 ~ 39007112 (+) True G140595
TU161603 lncRNA downstream 40916 39014873 ~ 39015078 (+) True G140598
TU161606 lncRNA downstream 44254 39018211 ~ 39018430 (+) True G140601
XM_021561873.2 mRNA upstream 12443 38942222 ~ 38952111 (+) False LOC110489231
XM_021561880.2 mRNA upstream 12448 38942241 ~ 38952106 (+) True LOC110489231
XM_021561835.2 mRNA upstream 28411 38928238 ~ 38936143 (+) False LOC110489198
XM_021561828.2 mRNA upstream 28411 38928240 ~ 38936143 (+) False LOC110489198
XM_021561842.2 mRNA upstream 28411 38928305 ~ 38936143 (+) True LOC110489198
XM_021561959.2 mRNA downstream 13112 38987069 ~ 38990470 (+) True LOC110489273
XM_021561973.2 mRNA downstream 26764 39000721 ~ 39044657 (+) False LOC110489280
XM_036990520.1 mRNA downstream 196316 39170273 ~ 39195284 (+) False atp1a3
XM_036933222.1 mRNA downstream 196322 39170279 ~ 39195284 (+) False atp1a3
NM_001124630.1 mRNA downstream 196560 39170517 ~ 39195241 (+) True atp1a3
TU160072 other upstream 912810 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1020542 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1023840 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1042484 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2565338 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2994417 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2994417 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3536373 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4756915 43730872 ~ 43731218 (+) True G146054

Expression Profile