RNA id: TU161301


Basic Information

Item Value
RNA id TU161301
length 2505
lncRNA type sense_over
GC content 0.41
exon number 3
gene id LOC110489269
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38861507 ~ 38973957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGGCAGGGCTGACTCTCAGGGTATGGGCGGAGACATCAGGGACCATGACCCGTTGGAGGCGGATCGATTTTACttataaaactgtttttgggGATTTAATAGTTTTGTCAATGTTTTCTACGTTACTTCCTCGTTCTCCTAAAGATTATCCCAAAGACTTGAGTAGTACATTCCATGAAGACAGAAACACCACTCCTTCGGGAGCTGAATGTTTGATGCGTTTTACAAATTAAGTcctatatataaaaaataaaaggcAGTTCTTAGCAGACCAAGTCAGTTGGTCAAGTAAGAGTAACTTGTGGCATAAATCGGTGTCCCATGGCCGTGATATATTATCTCTAATTGATAGTCGGGCATCGTGCAGGGAAACAAACACGAAGCGGATGTAACTTAGGAAAACAGCCCttatgttggaaacaaacattatgTTCTCATCCAAattcacatgtatttattttccaagctacagCGCAAGTATTACAGGAGGTTTTTAAAGGACCTGCTCCGTGTtatcatttttgccatggaaaaaaaacgttgcgatactggtatcatcacagCCTAATCGTTATATGGTTGGTCACTGTGAGTTCCATATTACTATCTCCACTTCCTTCTATACGGTCTCAGTATTGGTTTGAAGTTGTGCGTAGTATTTTTGCTCACTGTAAACATgagctttcggaaagtattcaggccccttgactttccacattttgagacgttagtcttattctaaaattggtgATTTTTTTCTTATCAATCTAAACAAAAAacccatgacaaagcaaaaacgtgtttttagaaattttacataattattcagaccctttgaagcacatttggcagcgattacagcctcaacttcttgggtacgacgctacaagcttggcagacctgtatttggggagtttctcccattcttttcggcagatcctctcaaggtctgtcaggttggatggggagcttcgacgtacagctattttcaggtctccagagacgttagatcgggttcaagtctgggctgtttgcttagggtcattgtcctgttggaaggtgaaccttcgccccagtcagaggtcctgggtgctttggagcaggttttcatcaaggatctctctgtactttgctgcgttcatctttccctcaacccttactagtcttccagtccctgctgctgaataacatccccacagcatgatgctgccacaaccactcttcaccgtagggatggtgccaggtttcttccgtctgctgagatggttttccttctgggaGATTCTCCTATCTCTAAAGAGGAACTCCCATTGGGTtcttggccagctctaggaaaagtcttggcgGTTCCTAacttcactgtgttcttggggaccttcagtcctgcaaacattttttggtgttcttcaacacaatcctgtctcggtactctacggacaatttcttcgacctcatggcttgggttttaCTCTGAaatgcaatgtcaactgtgggacctttttatatagacaggtgtgtttgtgcctttccaagtcatgtccaaacagttgaatttaccacaggtggactccaatcaagttgtagaaacatctcaaagatgatcaatggaaaccggatgcacctgtgctcaatttagagtctcatagcatacttatgtaaataaggtcaaactgttttcaccttgtcattatggggtattgtgtgtagattaaggaATGTTTTAAATGTAATCCTTTCTAGAATATTGCTTTAACATAACACTGGAAAAAgtcagtctgaatactttccaaatgcactgcattTCTTTTTTTAATATCTATTTGTAAAATAGATACAAGATGGATTATTATAGGAATTGACGTAAGCAGTTCAGAGTTTCTGAAAAATGTCATTTTCTAAAGACTGAATAGGACTGTAGGTTTATATTTTTACACTTCTATCAAGATGAGTGCCGTGAGGAGAGAATGTTATGTTTACTCGGTTTACATTCACAATCAATATcagtaatacatttaaaaaatgttaataGACTGCACAGAGTGTTTTTAAATGCTGTCAGCCCATTATCAGAAGATATCGGTATGACCTGTGAGTTGCAACTCTGCCTGAATGTTAGTCGGTCCTCTAGATGGCGATATGTACATTGTAAATTTGCCTGATCTGCGCCACCGGTCGGTCACATGAAATAAAAGGTGGTAAGGTTCTAAGTTGGTGCTATTTGCTGTTGATCATTGTTTTGCAGGCCTTTTGAAATGATTCATTTTTTAATATGGTACACATGGTCTTGCATCACAGCCATAAAAGGGCTCTCAAAATGGAGCTTCTTGATGTTAAAAGAACTGCGTCAGTTTTCACACCAGCCAAATAAATTCTTAGATTGCCCCCTTTACTGGTTAAGTAAACATAGCTCAAATATAACAATCCTGCAAAAGCCATGCTATTTGTATCAACTTTGTACAGATGGACAGACACGTGTGCCCAGAACTTTTGTCCCTCTTTTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161349 lncRNA upstream 7274 38952835 ~ 38963883 (+) True G140363
TU161300 lncRNA upstream 119095 38850907 ~ 38852062 (+) True G140318
TU161308 lncRNA upstream 123471 38847345 ~ 38847686 (+) True LOC110489178
TU161248 lncRNA upstream 263849 38707079 ~ 38707308 (+) True G140271
TU161241 lncRNA upstream 271412 38699431 ~ 38699745 (+) True G140264
TU161310 lncRNA downstream 255 38974072 ~ 38974620 (+) True G140325
TU161396 lncRNA downstream 19186 38993003 ~ 38993230 (+) True G140409
TU161600 lncRNA downstream 33031 39006848 ~ 39007112 (+) True G140595
TU161603 lncRNA downstream 41056 39014873 ~ 39015078 (+) True G140598
TU161606 lncRNA downstream 44394 39018211 ~ 39018430 (+) True G140601
XR_005039486.1 mRNA upstream 5656 38965348 ~ 38965501 (+) True LOC118944175
XM_021561873.2 mRNA upstream 19046 38942222 ~ 38952111 (+) False LOC110489231
XM_021561880.2 mRNA upstream 19051 38942241 ~ 38952106 (+) True LOC110489231
XM_021561835.2 mRNA upstream 35014 38928238 ~ 38936143 (+) False LOC110489198
XM_021561828.2 mRNA upstream 35014 38928240 ~ 38936143 (+) False LOC110489198
XM_021561959.2 mRNA downstream 13252 38987069 ~ 38990470 (+) True LOC110489273
XM_021561973.2 mRNA downstream 26904 39000721 ~ 39044657 (+) False LOC110489280
XM_036990520.1 mRNA downstream 196456 39170273 ~ 39195284 (+) False atp1a3
XM_036933222.1 mRNA downstream 196462 39170279 ~ 39195284 (+) False atp1a3
NM_001124630.1 mRNA downstream 196700 39170517 ~ 39195241 (+) True atp1a3
TU160072 other upstream 919413 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1027145 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1030443 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1049087 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2565478 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2994557 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2994557 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3536513 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4757055 43730872 ~ 43731218 (+) True G146054

Expression Profile