RNA id: XM_021561959.2


Basic Information

Item Value
RNA id XM_021561959.2
length 1373
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC110489273
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38987069 ~ 38990470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCCCCTTGCTGCATATCGTTGCACAATGCGCAAACGCGGATCTGGGTGAGAAGTATGATAGCGAGCTAGCTATTCCTCCCCCATCACACGGGCTCAACTCTAGCCAATCTGTTACTGTGAACGTTGAAAACGTTTATTTGTACCTGCCTAGCAACCTAGCTAGCTTGTTTCAATGTAACtatgagctaacgttagctaggttgcAAGTTAGCGTGAATTGCTGCAGTGGCAGTTTGCGAAGGAAGGAGCAGGTACTCGGCAGTCCAAGCCGCCAAACATAAGTTACCTGTCTGACACTGACGAGTGATGGAGGCCCCACCAGTCTCAGTGCTGCCCATCACGGGGGGCACAATTAACATGATGGAGTACCTGCTGCAAGGCAGCGTCTTGGACCAGGCCCTCGAAAGCCTATTGCACCGCCTCCGGGGCCTTTGTGACAACATGGAACCCGAGACATTTGCCGACCATGAGCTGGTCTACCTCCTGAAGGGCCAGCAGGGCAACCCGTTCCTGTTGCGAGCCCGCCGCTCCCTCTCCCACCCCACAGTGCCCTGGCACCTGCGCTACCTGGGTCAGCCGGAGGTGGGTGACAAGTCCCGCCACGCGCTGGTTCGCAACTGTGTGGATGTGGCCGCCTCGCACAGCTTGCCCGACTTCCTCAATGAAATGGGCTTCCGCATGGACCACGAGTTCATAGCCAAGGGCCACATTTTCCGCAAAGGTGTGCTCAAAGTGGTAGTTAGTAAACTGTCTCGCATCCTGGTCCCCGGGAATACAGAGAACACTGAGCCGCTGTCCCTCTCCTACCTGGTGGAGCTCAGTGTATTGGCCCCTGCGGGCCAGGATACCATGTCAGAGGACATGCGCAGCTTCGCTGAGCAGCTCAAGCCCCTGGTTCACCTGGAGAAGATTGACCCCAAGAGACACATGTAAGAAGGAGTGTTTTATGATGAGCCTCTGTTGGCTGTCATGGACAAAGTGTAgtttttattaaaacattttttttttttttacatgggacTTATTTTTGTATGATTCCTATGAGAAAGCGCTTTCCCACAGTATTTTGTCTCTGTAAATGAACTCTAGATCTCACAATCTTGATGCGTGTCTCGTACATTTGGAGAAGGACCATCTGTCATTTGGATGTTAGTGGTGTTTGACAAGGACTTCACAGGAGGTTTATGACATAGCCAACATGGCTGATGTGACAAATGAGGCTTTGAATGAGTCAATAAATAACAATGTTTCTATTCACAGTGCCGAACTCTTAGAATATACGTTTTGTGTAGTGCTTTGTTCTGATTTTGAGATGTTTTAAGAAATGCACAGCGCTATAGtgtttataaaaaaatgtttttctcaaCTCAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15135 MED18; mediator of RNA polymerase II transcription subunit 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161310 lncRNA upstream 12449 38974072 ~ 38974620 (+) True G140325
TU161302 lncRNA upstream 13252 38861507 ~ 38973817 (+) False LOC110489269
TU161301 lncRNA upstream 13252 38971157 ~ 38973817 (+) True LOC110489269
TU161349 lncRNA upstream 23186 38952835 ~ 38963883 (+) True G140363
TU161300 lncRNA upstream 135007 38850907 ~ 38852062 (+) True G140318
TU161396 lncRNA downstream 2533 38993003 ~ 38993230 (+) True G140409
TU161600 lncRNA downstream 16378 39006848 ~ 39007112 (+) True G140595
TU161603 lncRNA downstream 24403 39014873 ~ 39015078 (+) True G140598
TU161606 lncRNA downstream 27741 39018211 ~ 39018430 (+) True G140601
TU161613 lncRNA downstream 36705 39027175 ~ 39027490 (+) True G140608
XM_021561946.2 mRNA upstream 13112 38964554 ~ 38973957 (+) False LOC110489269
XR_005039486.1 mRNA upstream 21568 38965348 ~ 38965501 (+) True LOC118944175
XM_021561873.2 mRNA upstream 34958 38942222 ~ 38952111 (+) False LOC110489231
XM_021561880.2 mRNA upstream 34963 38942241 ~ 38952106 (+) True LOC110489231
XM_021561835.2 mRNA upstream 50926 38928238 ~ 38936143 (+) False LOC110489198
XM_021561973.2 mRNA downstream 10251 39000721 ~ 39044657 (+) False LOC110489280
XM_036990520.1 mRNA downstream 179803 39170273 ~ 39195284 (+) False atp1a3
XM_036933222.1 mRNA downstream 179809 39170279 ~ 39195284 (+) False atp1a3
NM_001124630.1 mRNA downstream 180047 39170517 ~ 39195241 (+) True atp1a3
XR_005039454.1 mRNA downstream 243890 39234360 ~ 39234415 (+) True LOC118944148
TU160072 other upstream 935325 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1043057 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1046355 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1064999 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2548825 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2977904 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2977904 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3519860 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4740402 43730872 ~ 43731218 (+) True G146054

Expression Profile